data_1DQE # _model_server_result.job_id S6WsTmUJoVrAKZY9gr200Q _model_server_result.datetime_utc '2025-02-18 00:53:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1dqe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":300}' # _entry.id 1DQE # _exptl.entry_id 1DQE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description HEXADECA-10,12-DIEN-1-OL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1DQE _cell.length_a 53.18 _cell.length_b 53.18 _cell.length_c 191.54 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DQE _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 19 A CYS 19 1_555 A SG CYS 54 A CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? disulf ? disulf2 A SG CYS 50 A CYS 50 1_555 A SG CYS 108 A CYS 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? disulf ? disulf3 A SG CYS 97 A CYS 97 1_555 A SG CYS 117 A CYS 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? disulf ? disulf4 B SG CYS 19 B CYS 19 1_555 B SG CYS 54 B CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf5 B SG CYS 50 B CYS 50 1_555 B SG CYS 108 B CYS 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? disulf ? disulf6 B SG CYS 97 B CYS 97 1_555 B SG CYS 117 B CYS 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? # _chem_comp.formula 'C16 H30 O' _chem_comp.formula_weight 238.409 _chem_comp.id BOM _chem_comp.mon_nstd_flag . _chem_comp.name HEXADECA-10,12-DIEN-1-OL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms BOMBYKOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 BOM sing 70 n n O1 HO1 BOM sing 71 n n C2 C4 BOM sing 72 n n C2 H21 BOM sing 73 n n C2 H22 BOM sing 74 n n C4 C7 BOM sing 75 n n C4 H41 BOM sing 76 n n C4 H42 BOM sing 77 n n C7 C10 BOM sing 78 n n C7 H71 BOM sing 79 n n C7 H72 BOM sing 80 n n C10 C13 BOM sing 81 n n C10 H101 BOM sing 82 n n C10 H102 BOM sing 83 n n C13 C16 BOM sing 84 n n C13 H131 BOM sing 85 n n C13 H132 BOM sing 86 n n C16 C19 BOM sing 87 n n C16 H161 BOM sing 88 n n C16 H162 BOM sing 89 n n C19 C22 BOM sing 90 n n C19 H191 BOM sing 91 n n C19 H192 BOM sing 92 n n C22 C25 BOM sing 93 n n C22 H221 BOM sing 94 n n C22 H222 BOM sing 95 n n C25 C28 BOM sing 96 n n C25 H251 BOM sing 97 n n C25 H252 BOM sing 98 n n C28 C31 BOM doub 99 e n C28 H281 BOM sing 100 n n C31 C33 BOM sing 101 n n C31 H311 BOM sing 102 n n C33 C35 BOM doub 103 z n C33 H331 BOM sing 104 n n C35 C37 BOM sing 105 n n C35 H351 BOM sing 106 n n C37 C39 BOM sing 107 n n C37 H371 BOM sing 108 n n C37 H372 BOM sing 109 n n C39 C42 BOM sing 110 n n C39 H391 BOM sing 111 n n C39 H392 BOM sing 112 n n C42 H421 BOM sing 113 n n C42 H422 BOM sing 114 n n C42 H423 BOM sing 115 n n # _atom_sites.entry_id 1DQE _atom_sites.fract_transf_matrix[1][1] 0.018804 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018804 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005221 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BOM A 1 300 300 BOM BOM . D 2 BOM B 1 400 400 BOM BOM . E 3 HOH A 1 301 1 HOH WAT . E 3 HOH A 2 302 3 HOH WAT . E 3 HOH A 3 303 6 HOH WAT . E 3 HOH A 4 304 7 HOH WAT . E 3 HOH A 5 305 11 HOH WAT . E 3 HOH A 6 306 19 HOH WAT . E 3 HOH A 7 307 20 HOH WAT . E 3 HOH A 8 308 21 HOH WAT . E 3 HOH A 9 309 23 HOH WAT . E 3 HOH A 10 310 24 HOH WAT . E 3 HOH A 11 311 25 HOH WAT . E 3 HOH A 12 312 32 HOH WAT . E 3 HOH A 13 313 33 HOH WAT . E 3 HOH A 14 314 36 HOH WAT . E 3 HOH A 15 315 38 HOH WAT . E 3 HOH A 16 316 40 HOH WAT . E 3 HOH A 17 317 41 HOH WAT . E 3 HOH A 18 318 43 HOH WAT . E 3 HOH A 19 319 44 HOH WAT . E 3 HOH A 20 320 46 HOH WAT . E 3 HOH A 21 321 47 HOH WAT . E 3 HOH A 22 322 48 HOH WAT . E 3 HOH A 23 323 49 HOH WAT . E 3 HOH A 24 324 52 HOH WAT . E 3 HOH A 25 325 54 HOH WAT . E 3 HOH A 26 326 55 HOH WAT . E 3 HOH A 27 327 56 HOH WAT . E 3 HOH A 28 328 58 HOH WAT . E 3 HOH A 29 329 59 HOH WAT . E 3 HOH A 30 330 60 HOH WAT . E 3 HOH A 31 331 61 HOH WAT . E 3 HOH A 32 332 62 HOH WAT . E 3 HOH A 33 333 63 HOH WAT . E 3 HOH A 34 334 65 HOH WAT . E 3 HOH A 35 335 68 HOH WAT . E 3 HOH A 36 336 69 HOH WAT . E 3 HOH A 37 337 71 HOH WAT . E 3 HOH A 38 338 72 HOH WAT . E 3 HOH A 39 339 73 HOH WAT . E 3 HOH A 40 340 74 HOH WAT . E 3 HOH A 41 341 75 HOH WAT . E 3 HOH A 42 342 76 HOH WAT . E 3 HOH A 43 343 80 HOH WAT . E 3 HOH A 44 344 81 HOH WAT . E 3 HOH A 45 345 82 HOH WAT . E 3 HOH A 46 346 84 HOH WAT . E 3 HOH A 47 347 86 HOH WAT . E 3 HOH A 48 348 89 HOH WAT . E 3 HOH A 49 349 94 HOH WAT . E 3 HOH A 50 350 95 HOH WAT . E 3 HOH A 51 351 96 HOH WAT . E 3 HOH A 52 352 99 HOH WAT . E 3 HOH A 53 353 101 HOH WAT . E 3 HOH A 54 354 106 HOH WAT . E 3 HOH A 55 355 110 HOH WAT . E 3 HOH A 56 356 111 HOH WAT . E 3 HOH A 57 357 113 HOH WAT . E 3 HOH A 58 358 115 HOH WAT . E 3 HOH A 59 359 117 HOH WAT . E 3 HOH A 60 360 118 HOH WAT . E 3 HOH A 61 361 119 HOH WAT . E 3 HOH A 62 362 120 HOH WAT . E 3 HOH A 63 363 122 HOH WAT . E 3 HOH A 64 364 124 HOH WAT . E 3 HOH A 65 365 125 HOH WAT . E 3 HOH A 66 366 126 HOH WAT . E 3 HOH A 67 367 131 HOH WAT . E 3 HOH A 68 368 134 HOH WAT . E 3 HOH A 69 369 135 HOH WAT . E 3 HOH A 70 370 138 HOH WAT . E 3 HOH A 71 371 139 HOH WAT . E 3 HOH A 72 372 141 HOH WAT . E 3 HOH A 73 373 142 HOH WAT . E 3 HOH A 74 374 146 HOH WAT . E 3 HOH A 75 375 148 HOH WAT . E 3 HOH A 76 376 150 HOH WAT . E 3 HOH A 77 377 151 HOH WAT . E 3 HOH A 78 378 152 HOH WAT . E 3 HOH A 79 379 155 HOH WAT . E 3 HOH A 80 380 156 HOH WAT . E 3 HOH A 81 381 158 HOH WAT . E 3 HOH A 82 382 160 HOH WAT . E 3 HOH A 83 383 161 HOH WAT . E 3 HOH A 84 384 162 HOH WAT . E 3 HOH A 85 385 163 HOH WAT . E 3 HOH A 86 386 166 HOH WAT . E 3 HOH A 87 387 168 HOH WAT . E 3 HOH A 88 388 170 HOH WAT . E 3 HOH A 89 389 172 HOH WAT . E 3 HOH A 90 390 173 HOH WAT . E 3 HOH A 91 391 174 HOH WAT . E 3 HOH A 92 392 177 HOH WAT . E 3 HOH A 93 393 180 HOH WAT . E 3 HOH A 94 394 182 HOH WAT . E 3 HOH A 95 395 183 HOH WAT . E 3 HOH A 96 396 186 HOH WAT . E 3 HOH A 97 397 187 HOH WAT . E 3 HOH A 98 398 188 HOH WAT . E 3 HOH A 99 399 191 HOH WAT . E 3 HOH A 100 400 192 HOH WAT . E 3 HOH A 101 401 193 HOH WAT . E 3 HOH A 102 402 194 HOH WAT . E 3 HOH A 103 403 195 HOH WAT . E 3 HOH A 104 404 196 HOH WAT . E 3 HOH A 105 405 201 HOH WAT . E 3 HOH A 106 406 202 HOH WAT . E 3 HOH A 107 407 203 HOH WAT . F 3 HOH B 1 401 2 HOH WAT . F 3 HOH B 2 402 4 HOH WAT . F 3 HOH B 3 403 5 HOH WAT . F 3 HOH B 4 404 8 HOH WAT . F 3 HOH B 5 405 9 HOH WAT . F 3 HOH B 6 406 10 HOH WAT . F 3 HOH B 7 407 12 HOH WAT . F 3 HOH B 8 408 13 HOH WAT . F 3 HOH B 9 409 14 HOH WAT . F 3 HOH B 10 410 15 HOH WAT . F 3 HOH B 11 411 16 HOH WAT . F 3 HOH B 12 412 17 HOH WAT . F 3 HOH B 13 413 18 HOH WAT . F 3 HOH B 14 414 22 HOH WAT . F 3 HOH B 15 415 26 HOH WAT . F 3 HOH B 16 416 27 HOH WAT . F 3 HOH B 17 417 28 HOH WAT . F 3 HOH B 18 418 29 HOH WAT . F 3 HOH B 19 419 30 HOH WAT . F 3 HOH B 20 420 31 HOH WAT . F 3 HOH B 21 421 34 HOH WAT . F 3 HOH B 22 422 35 HOH WAT . F 3 HOH B 23 423 37 HOH WAT . F 3 HOH B 24 424 39 HOH WAT . F 3 HOH B 25 425 42 HOH WAT . F 3 HOH B 26 426 45 HOH WAT . F 3 HOH B 27 427 50 HOH WAT . F 3 HOH B 28 428 51 HOH WAT . F 3 HOH B 29 429 53 HOH WAT . F 3 HOH B 30 430 57 HOH WAT . F 3 HOH B 31 431 64 HOH WAT . F 3 HOH B 32 432 66 HOH WAT . F 3 HOH B 33 433 67 HOH WAT . F 3 HOH B 34 434 70 HOH WAT . F 3 HOH B 35 435 77 HOH WAT . F 3 HOH B 36 436 78 HOH WAT . F 3 HOH B 37 437 79 HOH WAT . F 3 HOH B 38 438 83 HOH WAT . F 3 HOH B 39 439 85 HOH WAT . F 3 HOH B 40 440 87 HOH WAT . F 3 HOH B 41 441 88 HOH WAT . F 3 HOH B 42 442 90 HOH WAT . F 3 HOH B 43 443 91 HOH WAT . F 3 HOH B 44 444 92 HOH WAT . F 3 HOH B 45 445 93 HOH WAT . F 3 HOH B 46 446 97 HOH WAT . F 3 HOH B 47 447 98 HOH WAT . F 3 HOH B 48 448 100 HOH WAT . F 3 HOH B 49 449 102 HOH WAT . F 3 HOH B 50 450 103 HOH WAT . F 3 HOH B 51 451 104 HOH WAT . F 3 HOH B 52 452 105 HOH WAT . F 3 HOH B 53 453 107 HOH WAT . F 3 HOH B 54 454 108 HOH WAT . F 3 HOH B 55 455 109 HOH WAT . F 3 HOH B 56 456 112 HOH WAT . F 3 HOH B 57 457 114 HOH WAT . F 3 HOH B 58 458 116 HOH WAT . F 3 HOH B 59 459 121 HOH WAT . F 3 HOH B 60 460 123 HOH WAT . F 3 HOH B 61 461 127 HOH WAT . F 3 HOH B 62 462 128 HOH WAT . F 3 HOH B 63 463 129 HOH WAT . F 3 HOH B 64 464 130 HOH WAT . F 3 HOH B 65 465 132 HOH WAT . F 3 HOH B 66 466 133 HOH WAT . F 3 HOH B 67 467 136 HOH WAT . F 3 HOH B 68 468 137 HOH WAT . F 3 HOH B 69 469 140 HOH WAT . F 3 HOH B 70 470 143 HOH WAT . F 3 HOH B 71 471 144 HOH WAT . F 3 HOH B 72 472 145 HOH WAT . F 3 HOH B 73 473 147 HOH WAT . F 3 HOH B 74 474 149 HOH WAT . F 3 HOH B 75 475 153 HOH WAT . F 3 HOH B 76 476 154 HOH WAT . F 3 HOH B 77 477 157 HOH WAT . F 3 HOH B 78 478 159 HOH WAT . F 3 HOH B 79 479 164 HOH WAT . F 3 HOH B 80 480 165 HOH WAT . F 3 HOH B 81 481 167 HOH WAT . F 3 HOH B 82 482 169 HOH WAT . F 3 HOH B 83 483 171 HOH WAT . F 3 HOH B 84 484 175 HOH WAT . F 3 HOH B 85 485 176 HOH WAT . F 3 HOH B 86 486 178 HOH WAT . F 3 HOH B 87 487 179 HOH WAT . F 3 HOH B 88 488 181 HOH WAT . F 3 HOH B 89 489 184 HOH WAT . F 3 HOH B 90 490 185 HOH WAT . F 3 HOH B 91 491 189 HOH WAT . F 3 HOH B 92 492 190 HOH WAT . F 3 HOH B 93 493 197 HOH WAT . F 3 HOH B 94 494 198 HOH WAT . F 3 HOH B 95 495 199 HOH WAT . F 3 HOH B 96 496 200 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 BOM . . . C 2 -1.744 31.301 2.886 1 28.8 ? O1 BOM 300 A 1 HETATM 2 C C2 BOM . . . C 2 -1.235 32.329 2.02 1 40.09 ? C2 BOM 300 A 1 HETATM 3 C C4 BOM . . . C 2 0.295 32.341 2.005 1 33.69 ? C4 BOM 300 A 1 HETATM 4 C C7 BOM . . . C 2 0.782 30.905 1.752 1 49.61 ? C7 BOM 300 A 1 HETATM 5 C C10 BOM . . . C 2 1.795 30.549 0.677 1 42.18 ? C10 BOM 300 A 1 HETATM 6 C C13 BOM . . . C 2 2.684 29.358 1.19 1 23.61 ? C13 BOM 300 A 1 HETATM 7 C C16 BOM . . . C 2 2.164 28.022 0.717 1 22.89 ? C16 BOM 300 A 1 HETATM 8 C C19 BOM . . . C 2 3.28 26.961 0.709 1 38.8 ? C19 BOM 300 A 1 HETATM 9 C C22 BOM . . . C 2 3.069 25.811 1.683 1 35.95 ? C22 BOM 300 A 1 HETATM 10 C C25 BOM . . . C 2 4.13 24.716 1.517 1 26.63 ? C25 BOM 300 A 1 HETATM 11 C C28 BOM . . . C 2 5.296 24.975 2.447 1 25.23 ? C28 BOM 300 A 1 HETATM 12 C C31 BOM . . . C 2 5.62 26.199 2.824 1 42.45 ? C31 BOM 300 A 1 HETATM 13 C C33 BOM . . . C 2 6.695 26.586 3.691 1 29.82 ? C33 BOM 300 A 1 HETATM 14 C C35 BOM . . . C 2 7.03 27.833 4.015 1 43.68 ? C35 BOM 300 A 1 HETATM 15 C C37 BOM . . . C 2 6.532 29.197 3.724 1 48.77 ? C37 BOM 300 A 1 HETATM 16 C C39 BOM . . . C 2 7.457 30.292 4.277 1 60.09 ? C39 BOM 300 A 1 HETATM 17 C C42 BOM . . . C 2 6.834 31.693 4.189 1 43.25 ? C42 BOM 300 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 1187 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 17 #