data_1DR1 # _model_server_result.job_id DRc1HuUxc6I5-62dX23QSw _model_server_result.datetime_utc '2025-03-04 09:29:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1dr1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":198}' # _entry.id 1DR1 # _exptl.entry_id 1DR1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 239.231 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 7,8-DIHYDROBIOPTERIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 125.1 _cell.angle_gamma 90 _cell.entry_id 1DR1 _cell.length_a 89.44 _cell.length_b 48.31 _cell.length_c 64.26 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DR1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1 A,B,C,D,E 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 52.490163 0 52.574301 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 78 A GLU 78 1_555 B CA CA . A CA 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.876 ? metalc ? metalc2 A OE2 GLU 78 A GLU 78 2_656 B CA CA . A CA 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc3 C O1X NAP . A NAP 191 1_555 B CA CA . A CA 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc4 C O1X NAP . A NAP 191 2_656 B CA CA . A CA 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? metalc ? metalc5 B CA CA . A CA 200 1_555 E O HOH . A HOH 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc6 B CA CA . A CA 200 1_555 E O HOH . A HOH 278 2_656 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? # _chem_comp.formula 'C9 H13 N5 O3' _chem_comp.formula_weight 239.231 _chem_comp.id HBI _chem_comp.mon_nstd_flag . _chem_comp.name 7,8-DIHYDROBIOPTERIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 HBI doub 129 n y N1 C8A HBI sing 130 n y N2 C2 HBI sing 131 n n N2 HN21 HBI sing 132 n n N2 HN22 HBI sing 133 n n C2 N3 HBI sing 134 n y N3 C4 HBI sing 135 n y N3 H3 HBI sing 136 n n C4 O4 HBI doub 137 n n C4 C4A HBI sing 138 n y C4A C8A HBI doub 139 n y C4A N5 HBI sing 140 n n C8A N8 HBI sing 141 n n N8 C7 HBI sing 142 n n N8 H8 HBI sing 143 n n C7 C6 HBI sing 144 n n C7 H71 HBI sing 145 n n C7 H72 HBI sing 146 n n C6 N5 HBI doub 147 n n C6 C9 HBI sing 148 n n C9 O9 HBI sing 149 n n C9 C10 HBI sing 150 n n C9 H9 HBI sing 151 n n O9 HO9 HBI sing 152 n n C10 O10 HBI sing 153 n n C10 C11 HBI sing 154 n n C10 H10 HBI sing 155 n n O10 HO1 HBI sing 156 n n C11 H111 HBI sing 157 n n C11 H112 HBI sing 158 n n C11 H113 HBI sing 159 n n # _atom_sites.entry_id 1DR1 _atom_sites.fract_transf_matrix[1][1] 0.011181 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007858 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0207 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019021 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 200 200 CA CA . C 3 NAP A 1 191 191 NAP NAP . D 4 HBI A 1 198 198 HBI BIO . E 5 HOH A 1 202 202 HOH HOH . E 5 HOH A 2 203 203 HOH HOH . E 5 HOH A 3 205 205 HOH HOH . E 5 HOH A 4 220 220 HOH HOH . E 5 HOH A 5 230 230 HOH HOH . E 5 HOH A 6 233 233 HOH HOH . E 5 HOH A 7 240 240 HOH HOH . E 5 HOH A 8 257 257 HOH HOH . E 5 HOH A 9 265 265 HOH HOH . E 5 HOH A 10 278 278 HOH HOH . E 5 HOH A 11 279 279 HOH HOH . E 5 HOH A 12 295 295 HOH HOH . E 5 HOH A 13 318 318 HOH HOH . E 5 HOH A 14 330 330 HOH HOH . E 5 HOH A 15 335 335 HOH HOH . E 5 HOH A 16 342 342 HOH HOH . E 5 HOH A 17 346 346 HOH HOH . E 5 HOH A 18 358 358 HOH HOH . E 5 HOH A 19 365 365 HOH HOH . E 5 HOH A 20 367 367 HOH HOH . E 5 HOH A 21 392 392 HOH HOH . E 5 HOH A 22 393 393 HOH HOH . E 5 HOH A 23 424 424 HOH HOH . E 5 HOH A 24 427 427 HOH HOH . E 5 HOH A 25 430 430 HOH HOH . E 5 HOH A 26 440 440 HOH HOH . E 5 HOH A 27 463 463 HOH HOH . E 5 HOH A 28 493 493 HOH HOH . E 5 HOH A 29 551 551 HOH HOH . E 5 HOH A 30 584 584 HOH HOH . E 5 HOH A 31 585 585 HOH HOH . E 5 HOH A 32 601 601 HOH HOH . E 5 HOH A 33 602 602 HOH HOH . E 5 HOH A 34 603 603 HOH HOH . E 5 HOH A 35 604 604 HOH HOH . E 5 HOH A 36 605 605 HOH HOH . E 5 HOH A 37 606 606 HOH HOH . E 5 HOH A 38 607 607 HOH HOH . E 5 HOH A 39 608 608 HOH HOH . E 5 HOH A 40 609 609 HOH HOH . E 5 HOH A 41 610 610 HOH HOH . E 5 HOH A 42 611 611 HOH HOH . E 5 HOH A 43 612 612 HOH HOH . E 5 HOH A 44 614 614 HOH HOH . E 5 HOH A 45 615 615 HOH HOH . E 5 HOH A 46 617 617 HOH HOH . E 5 HOH A 47 619 619 HOH HOH . E 5 HOH A 48 621 621 HOH HOH . E 5 HOH A 49 622 622 HOH HOH . E 5 HOH A 50 623 623 HOH HOH . E 5 HOH A 51 627 627 HOH HOH . E 5 HOH A 52 630 630 HOH HOH . E 5 HOH A 53 637 637 HOH HOH . E 5 HOH A 54 644 644 HOH HOH . E 5 HOH A 55 647 647 HOH HOH . E 5 HOH A 56 648 648 HOH HOH . E 5 HOH A 57 652 652 HOH HOH . E 5 HOH A 58 655 655 HOH HOH . E 5 HOH A 59 662 662 HOH HOH . E 5 HOH A 60 672 672 HOH HOH . E 5 HOH A 61 687 687 HOH HOH . E 5 HOH A 62 688 688 HOH HOH . E 5 HOH A 63 689 689 HOH HOH . E 5 HOH A 64 690 690 HOH HOH . E 5 HOH A 65 691 691 HOH HOH . E 5 HOH A 66 692 692 HOH HOH . E 5 HOH A 67 693 693 HOH HOH . E 5 HOH A 68 694 694 HOH HOH . E 5 HOH A 69 696 696 HOH HOH . E 5 HOH A 70 700 700 HOH HOH . E 5 HOH A 71 701 701 HOH HOH . E 5 HOH A 72 703 703 HOH HOH . E 5 HOH A 73 704 704 HOH HOH . E 5 HOH A 74 706 706 HOH HOH . E 5 HOH A 75 708 708 HOH HOH . E 5 HOH A 76 709 709 HOH HOH . E 5 HOH A 77 710 710 HOH HOH . E 5 HOH A 78 711 711 HOH HOH . E 5 HOH A 79 712 712 HOH HOH . E 5 HOH A 80 713 713 HOH HOH . E 5 HOH A 81 715 715 HOH HOH . E 5 HOH A 82 716 716 HOH HOH . E 5 HOH A 83 718 718 HOH HOH . E 5 HOH A 84 719 719 HOH HOH . E 5 HOH A 85 720 720 HOH HOH . E 5 HOH A 86 725 725 HOH HOH . E 5 HOH A 87 727 727 HOH HOH . E 5 HOH A 88 732 732 HOH HOH . E 5 HOH A 89 733 733 HOH HOH . E 5 HOH A 90 735 735 HOH HOH . E 5 HOH A 91 738 738 HOH HOH . E 5 HOH A 92 739 739 HOH HOH . E 5 HOH A 93 740 740 HOH HOH . E 5 HOH A 94 750 750 HOH HOH . E 5 HOH A 95 752 752 HOH HOH . E 5 HOH A 96 753 753 HOH HOH . E 5 HOH A 97 755 755 HOH HOH . E 5 HOH A 98 756 756 HOH HOH . E 5 HOH A 99 757 757 HOH HOH . E 5 HOH A 100 758 758 HOH HOH . E 5 HOH A 101 759 759 HOH HOH . E 5 HOH A 102 760 760 HOH HOH . E 5 HOH A 103 761 761 HOH HOH . E 5 HOH A 104 762 762 HOH HOH . E 5 HOH A 105 763 763 HOH HOH . E 5 HOH A 106 764 764 HOH HOH . E 5 HOH A 107 765 765 HOH HOH . E 5 HOH A 108 766 766 HOH HOH . E 5 HOH A 109 768 768 HOH HOH . E 5 HOH A 110 770 770 HOH HOH . E 5 HOH A 111 771 771 HOH HOH . E 5 HOH A 112 772 772 HOH HOH . E 5 HOH A 113 774 774 HOH HOH . E 5 HOH A 114 776 776 HOH HOH . E 5 HOH A 115 777 777 HOH HOH . E 5 HOH A 116 778 778 HOH HOH . E 5 HOH A 117 780 780 HOH HOH . E 5 HOH A 118 781 781 HOH HOH . E 5 HOH A 119 782 782 HOH HOH . E 5 HOH A 120 783 783 HOH HOH . E 5 HOH A 121 788 788 HOH HOH . E 5 HOH A 122 789 789 HOH HOH . E 5 HOH A 123 790 790 HOH HOH . E 5 HOH A 124 794 794 HOH HOH . E 5 HOH A 125 796 796 HOH HOH . E 5 HOH A 126 799 799 HOH HOH . E 5 HOH A 127 804 804 HOH HOH . E 5 HOH A 128 807 807 HOH HOH . E 5 HOH A 129 813 813 HOH HOH . E 5 HOH A 130 814 814 HOH HOH . E 5 HOH A 131 815 815 HOH HOH . E 5 HOH A 132 818 818 HOH HOH . E 5 HOH A 133 821 821 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 HBI . . . D 4 15.86 5.277 5.955 1 10.99 ? N1 HBI 198 A 1 HETATM 2 N N2 HBI . . . D 4 15.541 4.664 3.674 1 5.9 ? N2 HBI 198 A 1 HETATM 3 C C2 HBI . . . D 4 16.189 5.426 4.578 1 12.25 ? C2 HBI 198 A 1 HETATM 4 N N3 HBI . . . D 4 17.1 6.355 4.233 1 12.03 ? N3 HBI 198 A 1 HETATM 5 C C4 HBI . . . D 4 17.821 7.21 5.05 1 10.15 ? C4 HBI 198 A 1 HETATM 6 O O4 HBI . . . D 4 18.697 8.022 4.598 1 13.51 ? O4 HBI 198 A 1 HETATM 7 C C4A HBI . . . D 4 17.496 6.991 6.409 1 10.41 ? C4A HBI 198 A 1 HETATM 8 C C8A HBI . . . D 4 16.516 6.113 6.815 1 8.5 ? C8A HBI 198 A 1 HETATM 9 N N8 HBI . . . D 4 16.202 5.87 8.084 1 10.61 ? N8 HBI 198 A 1 HETATM 10 C C7 HBI . . . D 4 16.791 6.655 8.93 1 10.01 ? C7 HBI 198 A 1 HETATM 11 C C6 HBI . . . D 4 17.699 7.634 8.668 1 11.99 ? C6 HBI 198 A 1 HETATM 12 N N5 HBI . . . D 4 18.084 7.801 7.366 1 8.05 ? N5 HBI 198 A 1 HETATM 13 C C9 HBI . . . D 4 18.387 8.491 9.726 1 13.13 ? C9 HBI 198 A 1 HETATM 14 O O9 HBI . . . D 4 19.69 8.567 9.324 1 11.55 ? O9 HBI 198 A 1 HETATM 15 C C10 HBI . . . D 4 17.878 9.926 9.963 1 16.22 ? C10 HBI 198 A 1 HETATM 16 O O10 HBI . . . D 4 17.778 10.469 8.626 1 22.73 ? O10 HBI 198 A 1 HETATM 17 C C11 HBI . . . D 4 16.474 9.804 10.503 1 15.92 ? C11 HBI 198 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 17 #