data_1DR2 # _model_server_result.job_id AhDtz60_LTOJ0CPJhBclpw _model_server_result.datetime_utc '2025-03-04 09:46:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1dr2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":191}' # _entry.id 1DR2 # _exptl.entry_id 1DR2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 759.471 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '7-THIONICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 124.63 _cell.angle_gamma 90 _cell.entry_id 1DR2 _cell.length_a 89.02 _cell.length_b 48.24 _cell.length_c 64.11 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DR2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 1 A,B,C,D 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 52.587912 0 52.752204 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 78 A GLU 78 1_555 B CA CA . A CA 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? metalc ? metalc2 A OE2 GLU 78 A GLU 78 2_656 B CA CA . A CA 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? metalc ? metalc3 C O3X TAP . A TAP 191 1_555 B CA CA . A CA 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? metalc ? metalc4 C O3X TAP . A TAP 191 2_656 B CA CA . A CA 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? metalc ? metalc5 B CA CA . A CA 200 1_555 D O HOH . A HOH 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc6 B CA CA . A CA 200 1_555 D O HOH . A HOH 278 2_656 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? # _chem_comp.formula 'C21 H28 N7 O16 P3 S' _chem_comp.formula_weight 759.471 _chem_comp.id TAP _chem_comp.mon_nstd_flag . _chem_comp.name '7-THIONICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms TATP # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A TAP doub 290 n n PA O2A TAP sing 291 n n PA O5B TAP sing 292 n n PA O3 TAP sing 293 n n O2A HOA2 TAP sing 294 n n O5B C5B TAP sing 295 n n C5B C4B TAP sing 296 n n C5B H51A TAP sing 297 n n C5B H52A TAP sing 298 n n C4B O4B TAP sing 299 n n C4B C3B TAP sing 300 n n C4B H4B TAP sing 301 n n O4B C1B TAP sing 302 n n C3B O3B TAP sing 303 n n C3B C2B TAP sing 304 n n C3B H3B TAP sing 305 n n O3B HO3A TAP sing 306 n n C2B O2B TAP sing 307 n n C2B C1B TAP sing 308 n n C2B H2B TAP sing 309 n n O2B P2B TAP sing 310 n n C1B N9A TAP sing 311 n n C1B H1B TAP sing 312 n n N9A C8A TAP sing 313 n y N9A C4A TAP sing 314 n y C8A N7A TAP doub 315 n y C8A H8A TAP sing 316 n n N7A C5A TAP sing 317 n y C5A C6A TAP sing 318 n y C5A C4A TAP doub 319 n y C6A N6A TAP sing 320 n n C6A N1A TAP doub 321 n y N6A H61A TAP sing 322 n n N6A H62A TAP sing 323 n n N1A C2A TAP sing 324 n y C2A N3A TAP doub 325 n y C2A H2A TAP sing 326 n n N3A C4A TAP sing 327 n y O3 PN TAP sing 328 n n PN O1N TAP doub 329 n n PN O2N TAP sing 330 n n PN O5D TAP sing 331 n n O5D C5D TAP sing 332 n n C5D C4D TAP sing 333 n n C5D H51N TAP sing 334 n n C5D H52N TAP sing 335 n n C4D O4D TAP sing 336 n n C4D C3D TAP sing 337 n n C4D H4D TAP sing 338 n n O4D C1D TAP sing 339 n n C3D O3D TAP sing 340 n n C3D C2D TAP sing 341 n n C3D H3D TAP sing 342 n n O3D HO3N TAP sing 343 n n C2D O2D TAP sing 344 n n C2D C1D TAP sing 345 n n C2D H2D TAP sing 346 n n O2D HO2N TAP sing 347 n n C1D N1N TAP sing 348 n n C1D H1D TAP sing 349 n n N1N C2N TAP sing 350 n y N1N C6N TAP doub 351 n y C2N C3N TAP doub 352 n y C2N H2N TAP sing 353 n n C3N C7N TAP sing 354 n n C3N C4N TAP sing 355 n y C7N S7N TAP doub 356 n n C7N N7N TAP sing 357 n n N7N H71N TAP sing 358 n n N7N H72N TAP sing 359 n n C4N C5N TAP doub 360 n y C4N H4N TAP sing 361 n n C5N C6N TAP sing 362 n y C5N H5N TAP sing 363 n n C6N H6N TAP sing 364 n n P2B O1X TAP doub 365 n n P2B O2X TAP sing 366 n n P2B O3X TAP sing 367 n n O2X HOP2 TAP sing 368 n n O3X HOP3 TAP sing 369 n n # _atom_sites.entry_id 1DR2 _atom_sites.fract_transf_matrix[1][1] 0.011233 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007758 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02073 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018957 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 200 200 CA CA . C 3 TAP A 1 191 191 TAP TAP . D 4 HOH A 1 202 202 HOH HOH . D 4 HOH A 2 203 203 HOH HOH . D 4 HOH A 3 205 205 HOH HOH . D 4 HOH A 4 220 220 HOH HOH . D 4 HOH A 5 229 229 HOH HOH . D 4 HOH A 6 230 230 HOH HOH . D 4 HOH A 7 233 233 HOH HOH . D 4 HOH A 8 240 240 HOH HOH . D 4 HOH A 9 257 257 HOH HOH . D 4 HOH A 10 265 265 HOH HOH . D 4 HOH A 11 278 278 HOH HOH . D 4 HOH A 12 279 279 HOH HOH . D 4 HOH A 13 295 295 HOH HOH . D 4 HOH A 14 318 318 HOH HOH . D 4 HOH A 15 330 330 HOH HOH . D 4 HOH A 16 335 335 HOH HOH . D 4 HOH A 17 339 339 HOH HOH . D 4 HOH A 18 342 342 HOH HOH . D 4 HOH A 19 346 346 HOH HOH . D 4 HOH A 20 358 358 HOH HOH . D 4 HOH A 21 365 365 HOH HOH . D 4 HOH A 22 367 367 HOH HOH . D 4 HOH A 23 383 383 HOH HOH . D 4 HOH A 24 392 392 HOH HOH . D 4 HOH A 25 393 393 HOH HOH . D 4 HOH A 26 424 424 HOH HOH . D 4 HOH A 27 427 427 HOH HOH . D 4 HOH A 28 440 440 HOH HOH . D 4 HOH A 29 463 463 HOH HOH . D 4 HOH A 30 493 493 HOH HOH . D 4 HOH A 31 551 551 HOH HOH . D 4 HOH A 32 584 584 HOH HOH . D 4 HOH A 33 585 585 HOH HOH . D 4 HOH A 34 601 601 HOH HOH . D 4 HOH A 35 602 602 HOH HOH . D 4 HOH A 36 603 603 HOH HOH . D 4 HOH A 37 604 604 HOH HOH . D 4 HOH A 38 605 605 HOH HOH . D 4 HOH A 39 606 606 HOH HOH . D 4 HOH A 40 607 607 HOH HOH . D 4 HOH A 41 608 608 HOH HOH . D 4 HOH A 42 609 609 HOH HOH . D 4 HOH A 43 610 610 HOH HOH . D 4 HOH A 44 611 611 HOH HOH . D 4 HOH A 45 612 612 HOH HOH . D 4 HOH A 46 613 613 HOH HOH . D 4 HOH A 47 615 615 HOH HOH . D 4 HOH A 48 617 617 HOH HOH . D 4 HOH A 49 619 619 HOH HOH . D 4 HOH A 50 620 620 HOH HOH . D 4 HOH A 51 621 621 HOH HOH . D 4 HOH A 52 622 622 HOH HOH . D 4 HOH A 53 623 623 HOH HOH . D 4 HOH A 54 625 625 HOH HOH . D 4 HOH A 55 630 630 HOH HOH . D 4 HOH A 56 637 637 HOH HOH . D 4 HOH A 57 644 644 HOH HOH . D 4 HOH A 58 647 647 HOH HOH . D 4 HOH A 59 648 648 HOH HOH . D 4 HOH A 60 652 652 HOH HOH . D 4 HOH A 61 653 653 HOH HOH . D 4 HOH A 62 655 655 HOH HOH . D 4 HOH A 63 677 677 HOH HOH . D 4 HOH A 64 731 731 HOH HOH . D 4 HOH A 65 732 732 HOH HOH . D 4 HOH A 66 734 734 HOH HOH . D 4 HOH A 67 736 736 HOH HOH . D 4 HOH A 68 737 737 HOH HOH . D 4 HOH A 69 743 743 HOH HOH . D 4 HOH A 70 746 746 HOH HOH . D 4 HOH A 71 749 749 HOH HOH . D 4 HOH A 72 750 750 HOH HOH . D 4 HOH A 73 758 758 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA TAP . . . C 3 21.925 5.227 17.932 1 26.86 ? PA TAP 191 A 1 HETATM 2 O O1A TAP . . . C 3 21.133 3.988 17.962 1 26.12 ? O1A TAP 191 A 1 HETATM 3 O O2A TAP . . . C 3 21.264 6.291 17.058 1 26.44 ? O2A TAP 191 A 1 HETATM 4 O O5B TAP . . . C 3 22.297 5.856 19.387 1 30.36 ? O5B TAP 191 A 1 HETATM 5 C C5B TAP . . . C 3 22.883 5.038 20.434 1 27.37 ? C5B TAP 191 A 1 HETATM 6 C C4B TAP . . . C 3 22.426 5.57 21.783 1 28.47 ? C4B TAP 191 A 1 HETATM 7 O O4B TAP . . . C 3 21.252 5.624 21.767 1 29.58 ? O4B TAP 191 A 1 HETATM 8 C C3B TAP . . . C 3 22.849 4.605 22.939 1 27.77 ? C3B TAP 191 A 1 HETATM 9 O O3B TAP . . . C 3 24.161 5.108 23.411 1 29.7 ? O3B TAP 191 A 1 HETATM 10 C C2B TAP . . . C 3 21.725 5.012 23.926 1 28.15 ? C2B TAP 191 A 1 HETATM 11 O O2B TAP . . . C 3 21.901 6.281 24.463 1 29.88 ? O2B TAP 191 A 1 HETATM 12 C C1B TAP . . . C 3 20.585 5.151 22.962 1 27.07 ? C1B TAP 191 A 1 HETATM 13 N N9A TAP . . . C 3 19.89 3.873 22.715 1 28.23 ? N9A TAP 191 A 1 HETATM 14 C C8A TAP . . . C 3 20.097 3.109 21.627 1 28.07 ? C8A TAP 191 A 1 HETATM 15 N N7A TAP . . . C 3 19.332 2.035 21.681 1 29.89 ? N7A TAP 191 A 1 HETATM 16 C C5A TAP . . . C 3 18.645 2.211 22.95 1 25.39 ? C5A TAP 191 A 1 HETATM 17 C C6A TAP . . . C 3 17.581 1.41 23.761 1 27.29 ? C6A TAP 191 A 1 HETATM 18 N N6A TAP . . . C 3 17.056 0.238 23.317 1 31.21 ? N6A TAP 191 A 1 HETATM 19 N N1A TAP . . . C 3 17.155 1.878 24.951 1 28.01 ? N1A TAP 191 A 1 HETATM 20 C C2A TAP . . . C 3 17.713 3.05 25.316 1 26.21 ? C2A TAP 191 A 1 HETATM 21 N N3A TAP . . . C 3 18.595 3.844 24.698 1 29.39 ? N3A TAP 191 A 1 HETATM 22 C C4A TAP . . . C 3 19.028 3.342 23.514 1 27.97 ? C4A TAP 191 A 1 HETATM 23 O O3 TAP . . . C 3 23.353 5.044 17.334 1 26.28 ? O3 TAP 191 A 1 HETATM 24 P PN TAP . . . C 3 24.093 4.268 16.176 1 27.15 ? PN TAP 191 A 1 HETATM 25 O O1N TAP . . . C 3 23.798 2.864 16.071 1 28.96 ? O1N TAP 191 A 1 HETATM 26 O O2N TAP . . . C 3 25.52 4.524 16.173 1 28.37 ? O2N TAP 191 A 1 HETATM 27 O O5D TAP . . . C 3 23.453 5.025 14.873 1 25.29 ? O5D TAP 191 A 1 HETATM 28 C C5D TAP . . . C 3 23.8 6.41 14.557 1 24.96 ? C5D TAP 191 A 1 HETATM 29 C C4D TAP . . . C 3 24.774 6.289 13.37 1 24.89 ? C4D TAP 191 A 1 HETATM 30 O O4D TAP . . . C 3 24.063 5.458 12.411 1 25.03 ? O4D TAP 191 A 1 HETATM 31 C C3D TAP . . . C 3 25.004 7.656 12.55 1 23.55 ? C3D TAP 191 A 1 HETATM 32 O O3D TAP . . . C 3 26.126 7.404 11.63 1 17.1 ? O3D TAP 191 A 1 HETATM 33 C C2D TAP . . . C 3 23.677 7.699 11.748 1 25.03 ? C2D TAP 191 A 1 HETATM 34 O O2D TAP . . . C 3 23.901 8.458 10.544 1 28.17 ? O2D TAP 191 A 1 HETATM 35 C C1D TAP . . . C 3 23.495 6.256 11.352 1 22.66 ? C1D TAP 191 A 1 HETATM 36 N N1N TAP . . . C 3 22.062 5.962 10.917 1 24.1 ? N1N TAP 191 A 1 HETATM 37 C C2N TAP . . . C 3 21.7 5.563 9.628 1 22.55 ? C2N TAP 191 A 1 HETATM 38 C C3N TAP . . . C 3 20.435 5.27 9.303 1 23.29 ? C3N TAP 191 A 1 HETATM 39 C C7N TAP . . . C 3 20.201 4.812 7.928 1 28.22 ? C7N TAP 191 A 1 HETATM 40 S S7N TAP . . . C 3 18.695 4.925 7.332 1 39.36 ? S7N TAP 191 A 1 HETATM 41 N N7N TAP . . . C 3 21.135 4.265 7.18 1 23.29 ? N7N TAP 191 A 1 HETATM 42 C C4N TAP . . . C 3 19.258 5.319 10.319 1 21.55 ? C4N TAP 191 A 1 HETATM 43 C C5N TAP . . . C 3 19.782 5.741 11.677 1 20.97 ? C5N TAP 191 A 1 HETATM 44 C C6N TAP . . . C 3 21.067 6.006 11.921 1 23.59 ? C6N TAP 191 A 1 HETATM 45 P P2B TAP . . . C 3 22.612 6.51 25.865 1 33.26 ? P2B TAP 191 A 1 HETATM 46 O O1X TAP . . . C 3 22.452 7.972 26.242 1 28.86 ? O1X TAP 191 A 1 HETATM 47 O O2X TAP . . . C 3 21.815 5.592 26.74 1 32.93 ? O2X TAP 191 A 1 HETATM 48 O O3X TAP . . . C 3 24.035 6.094 25.697 1 24.99 ? O3X TAP 191 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 248 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 48 #