data_1DR3
#
_model_server_result.job_id            fJ0tz1-Z0jxX3Eb-Rc1J0w 
_model_server_result.datetime_utc      '2025-03-04 09:15:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1dr3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":198}' 
#
_entry.id    1DR3 
#
_exptl.entry_id    1DR3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              239.231 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            7,8-DIHYDROBIOPTERIN 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          124.8 
_cell.angle_gamma         90 
_cell.entry_id            1DR3 
_cell.length_a            89.2 
_cell.length_b            48.31 
_cell.length_c            64.23 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1DR3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E 1 1 
A,B,C,D,E 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 52.543068 0 52.742414 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE2 GLU 78 A GLU 78 1_555 B CA CA . A CA 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? 
metalc ? metalc2 A OE2 GLU 78 A GLU 78 2_656 B CA CA . A CA 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? 
metalc ? metalc3 C O3X TAP . A TAP 191 1_555 B CA CA . A CA 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? 
metalc ? metalc4 C O3X TAP . A TAP 191 2_656 B CA CA . A CA 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? 
metalc ? metalc5 B CA CA . A CA 200 1_555 E O HOH . A HOH 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? 
metalc ? metalc6 B CA CA . A CA 200 1_555 E O HOH . A HOH 278 2_656 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? 
#
_chem_comp.formula           'C9 H13 N5 O3' 
_chem_comp.formula_weight    239.231 
_chem_comp.id                HBI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              7,8-DIHYDROBIOPTERIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 HBI doub 129 n y 
N1 C8A HBI sing 130 n y 
N2 C2 HBI sing 131 n n 
N2 HN21 HBI sing 132 n n 
N2 HN22 HBI sing 133 n n 
C2 N3 HBI sing 134 n y 
N3 C4 HBI sing 135 n y 
N3 H3 HBI sing 136 n n 
C4 O4 HBI doub 137 n n 
C4 C4A HBI sing 138 n y 
C4A C8A HBI doub 139 n y 
C4A N5 HBI sing 140 n n 
C8A N8 HBI sing 141 n n 
N8 C7 HBI sing 142 n n 
N8 H8 HBI sing 143 n n 
C7 C6 HBI sing 144 n n 
C7 H71 HBI sing 145 n n 
C7 H72 HBI sing 146 n n 
C6 N5 HBI doub 147 n n 
C6 C9 HBI sing 148 n n 
C9 O9 HBI sing 149 n n 
C9 C10 HBI sing 150 n n 
C9 H9 HBI sing 151 n n 
O9 HO9 HBI sing 152 n n 
C10 O10 HBI sing 153 n n 
C10 C11 HBI sing 154 n n 
C10 H10 HBI sing 155 n n 
O10 HO1 HBI sing 156 n n 
C11 H111 HBI sing 157 n n 
C11 H112 HBI sing 158 n n 
C11 H113 HBI sing 159 n n 
#
_atom_sites.entry_id                     1DR3 
_atom_sites.fract_transf_matrix[1][1]    0.011211 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.007792 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.0207 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01896 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CA A 1 200 200 CA CA . 
C 3 TAP A 1 191 191 TAP TAP . 
D 4 HBI A 1 198 198 HBI BIO . 
E 5 HOH A 1 202 202 HOH HOH . 
E 5 HOH A 2 203 203 HOH HOH . 
E 5 HOH A 3 205 205 HOH HOH . 
E 5 HOH A 4 220 220 HOH HOH . 
E 5 HOH A 5 230 230 HOH HOH . 
E 5 HOH A 6 233 233 HOH HOH . 
E 5 HOH A 7 240 240 HOH HOH . 
E 5 HOH A 8 257 257 HOH HOH . 
E 5 HOH A 9 265 265 HOH HOH . 
E 5 HOH A 10 278 278 HOH HOH . 
E 5 HOH A 11 279 279 HOH HOH . 
E 5 HOH A 12 295 295 HOH HOH . 
E 5 HOH A 13 318 318 HOH HOH . 
E 5 HOH A 14 330 330 HOH HOH . 
E 5 HOH A 15 335 335 HOH HOH . 
E 5 HOH A 16 342 342 HOH HOH . 
E 5 HOH A 17 346 346 HOH HOH . 
E 5 HOH A 18 358 358 HOH HOH . 
E 5 HOH A 19 365 365 HOH HOH . 
E 5 HOH A 20 367 367 HOH HOH . 
E 5 HOH A 21 383 383 HOH HOH . 
E 5 HOH A 22 392 392 HOH HOH . 
E 5 HOH A 23 393 393 HOH HOH . 
E 5 HOH A 24 424 424 HOH HOH . 
E 5 HOH A 25 427 427 HOH HOH . 
E 5 HOH A 26 430 430 HOH HOH . 
E 5 HOH A 27 440 440 HOH HOH . 
E 5 HOH A 28 463 463 HOH HOH . 
E 5 HOH A 29 493 493 HOH HOH . 
E 5 HOH A 30 551 551 HOH HOH . 
E 5 HOH A 31 584 584 HOH HOH . 
E 5 HOH A 32 585 585 HOH HOH . 
E 5 HOH A 33 601 601 HOH HOH . 
E 5 HOH A 34 602 602 HOH HOH . 
E 5 HOH A 35 603 603 HOH HOH . 
E 5 HOH A 36 604 604 HOH HOH . 
E 5 HOH A 37 605 605 HOH HOH . 
E 5 HOH A 38 606 606 HOH HOH . 
E 5 HOH A 39 607 607 HOH HOH . 
E 5 HOH A 40 608 608 HOH HOH . 
E 5 HOH A 41 609 609 HOH HOH . 
E 5 HOH A 42 610 610 HOH HOH . 
E 5 HOH A 43 611 611 HOH HOH . 
E 5 HOH A 44 612 612 HOH HOH . 
E 5 HOH A 45 614 614 HOH HOH . 
E 5 HOH A 46 615 615 HOH HOH . 
E 5 HOH A 47 617 617 HOH HOH . 
E 5 HOH A 48 619 619 HOH HOH . 
E 5 HOH A 49 621 621 HOH HOH . 
E 5 HOH A 50 622 622 HOH HOH . 
E 5 HOH A 51 623 623 HOH HOH . 
E 5 HOH A 52 627 627 HOH HOH . 
E 5 HOH A 53 630 630 HOH HOH . 
E 5 HOH A 54 632 632 HOH HOH . 
E 5 HOH A 55 637 637 HOH HOH . 
E 5 HOH A 56 644 644 HOH HOH . 
E 5 HOH A 57 647 647 HOH HOH . 
E 5 HOH A 58 648 648 HOH HOH . 
E 5 HOH A 59 652 652 HOH HOH . 
E 5 HOH A 60 655 655 HOH HOH . 
E 5 HOH A 61 662 662 HOH HOH . 
E 5 HOH A 62 672 672 HOH HOH . 
E 5 HOH A 63 687 687 HOH HOH . 
E 5 HOH A 64 688 688 HOH HOH . 
E 5 HOH A 65 689 689 HOH HOH . 
E 5 HOH A 66 690 690 HOH HOH . 
E 5 HOH A 67 691 691 HOH HOH . 
E 5 HOH A 68 692 692 HOH HOH . 
E 5 HOH A 69 693 693 HOH HOH . 
E 5 HOH A 70 694 694 HOH HOH . 
E 5 HOH A 71 696 696 HOH HOH . 
E 5 HOH A 72 698 698 HOH HOH . 
E 5 HOH A 73 699 699 HOH HOH . 
E 5 HOH A 74 700 700 HOH HOH . 
E 5 HOH A 75 701 701 HOH HOH . 
E 5 HOH A 76 703 703 HOH HOH . 
E 5 HOH A 77 704 704 HOH HOH . 
E 5 HOH A 78 706 706 HOH HOH . 
E 5 HOH A 79 708 708 HOH HOH . 
E 5 HOH A 80 709 709 HOH HOH . 
E 5 HOH A 81 710 710 HOH HOH . 
E 5 HOH A 82 711 711 HOH HOH . 
E 5 HOH A 83 712 712 HOH HOH . 
E 5 HOH A 84 713 713 HOH HOH . 
E 5 HOH A 85 714 714 HOH HOH . 
E 5 HOH A 86 715 715 HOH HOH . 
E 5 HOH A 87 716 716 HOH HOH . 
E 5 HOH A 88 718 718 HOH HOH . 
E 5 HOH A 89 719 719 HOH HOH . 
E 5 HOH A 90 720 720 HOH HOH . 
E 5 HOH A 91 721 721 HOH HOH . 
E 5 HOH A 92 725 725 HOH HOH . 
E 5 HOH A 93 727 727 HOH HOH . 
E 5 HOH A 94 730 730 HOH HOH . 
E 5 HOH A 95 731 731 HOH HOH . 
E 5 HOH A 96 732 732 HOH HOH . 
E 5 HOH A 97 733 733 HOH HOH . 
E 5 HOH A 98 735 735 HOH HOH . 
E 5 HOH A 99 737 737 HOH HOH . 
E 5 HOH A 100 738 738 HOH HOH . 
E 5 HOH A 101 739 739 HOH HOH . 
E 5 HOH A 102 740 740 HOH HOH . 
E 5 HOH A 103 741 741 HOH HOH . 
E 5 HOH A 104 742 742 HOH HOH . 
E 5 HOH A 105 746 746 HOH HOH . 
E 5 HOH A 106 747 747 HOH HOH . 
E 5 HOH A 107 748 748 HOH HOH . 
E 5 HOH A 108 750 750 HOH HOH . 
E 5 HOH A 109 752 752 HOH HOH . 
E 5 HOH A 110 753 753 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 HBI . . . D 4 15.745 5.471 5.959 1 59.31 ? N1 HBI 198 A 1 
HETATM 2 N N2 HBI . . . D 4 15.405 4.874 3.681 1 50.36 ? N2 HBI 198 A 1 
HETATM 3 C C2 HBI . . . D 4 16.061 5.663 4.586 1 55.15 ? C2 HBI 198 A 1 
HETATM 4 N N3 HBI . . . D 4 16.951 6.629 4.244 1 55.38 ? N3 HBI 198 A 1 
HETATM 5 C C4 HBI . . . D 4 17.664 7.49 5.047 1 56.73 ? C4 HBI 198 A 1 
HETATM 6 O O4 HBI . . . D 4 18.473 8.404 4.653 1 52.92 ? O4 HBI 198 A 1 
HETATM 7 C C4A HBI . . . D 4 17.359 7.23 6.423 1 60.05 ? C4A HBI 198 A 1 
HETATM 8 C C8A HBI . . . D 4 16.43 6.282 6.831 1 59.13 ? C8A HBI 198 A 1 
HETATM 9 N N8 HBI . . . D 4 16.129 6.027 8.121 1 61.84 ? N8 HBI 198 A 1 
HETATM 10 C C7 HBI . . . D 4 16.745 6.768 8.958 1 60.54 ? C7 HBI 198 A 1 
HETATM 11 C C6 HBI . . . D 4 17.668 7.769 8.702 1 57.89 ? C6 HBI 198 A 1 
HETATM 12 N N5 HBI . . . D 4 17.977 7.977 7.373 1 59.67 ? N5 HBI 198 A 1 
HETATM 13 C C9 HBI . . . D 4 18.357 8.605 9.734 1 55.43 ? C9 HBI 198 A 1 
HETATM 14 O O9 HBI . . . D 4 19.724 8.633 9.521 1 54.64 ? O9 HBI 198 A 1 
HETATM 15 C C10 HBI . . . D 4 17.786 9.827 10.356 1 56.06 ? C10 HBI 198 A 1 
HETATM 16 O O10 HBI . . . D 4 17.809 10.934 9.365 1 60.46 ? O10 HBI 198 A 1 
HETATM 17 C C11 HBI . . . D 4 16.368 9.454 10.725 1 54.58 ? C11 HBI 198 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           269 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           17 
#