data_1DR4
#
_model_server_result.job_id            IyfyG2LbZto7FOjqzbEVTQ 
_model_server_result.datetime_utc      '2025-07-02 15:04:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1dr4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":198}' 
#
_entry.id    1DR4 
#
_exptl.entry_id    1DR4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              239.231 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            7,8-DIHYDROBIOPTERIN 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          124.8 
_cell.angle_gamma         90 
_cell.entry_id            1DR4 
_cell.length_a            89.08 
_cell.length_b            48.29 
_cell.length_c            64.32 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1DR4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F 1 1 
A,B,C,D,E,F 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 52.371703 0 52.816317 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 11 A CYS 11 1_555 B HG HG . A HG 190 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.436 ? 
metalc ? metalc2 A SG CYS 11 A CYS 11 1_555 B HG HG . A HG 190 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.476 ? 
metalc ? metalc3 A OD1 ASN 13 A ASN 13 1_555 B HG HG . A HG 190 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.906 ? 
metalc ? metalc4 A ND2 ASN 13 A ASN 13 1_555 B HG HG . A HG 190 1_555 ? ? ? ? A ? ? ? ? ? ? ? 3.016 ? 
metalc ? metalc5 A O GLY 15 A GLY 15 1_555 B HG HG . A HG 190 1_555 ? ? ? ? B ? ? ? ? ? ? ? 3.469 ? 
metalc ? metalc6 A OE2 GLU 78 A GLU 78 1_555 C CA CA . A CA 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.957 ? 
metalc ? metalc7 A OE2 GLU 78 A GLU 78 2_656 C CA CA . A CA 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
metalc ? metalc8 A N PHE 142 A PHE 142 1_555 B HG HG . A HG 190 1_555 ? ? ? ? A ? ? ? ? ? ? ? 3.108 ? 
metalc ? metalc9 A O PHE 142 A PHE 142 1_555 B HG HG . A HG 190 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.884 ? 
metalc ? metalc10 A O PHE 142 A PHE 142 1_555 B HG HG . A HG 190 1_555 ? ? ? ? B ? ? ? ? ? ? ? 3.289 ? 
metalc ? metalc11 A OG SER 144 A SER 144 1_555 B HG HG . A HG 190 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.509 ? 
metalc ? metalc12 B HG HG . A HG 190 1_555 F O HOH . A HOH 705 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.947 ? 
metalc ? metalc13 B HG HG . A HG 190 1_555 F O HOH . A HOH 705 1_555 ? B ? ? ? ? ? ? ? ? ? ? 3.326 ? 
metalc ? metalc14 D O1X NAP . A NAP 191 1_555 C CA CA . A CA 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? 
metalc ? metalc15 D O1X NAP . A NAP 191 2_656 C CA CA . A CA 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? 
metalc ? metalc16 C CA CA . A CA 200 1_555 F O HOH . A HOH 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? 
metalc ? metalc17 C CA CA . A CA 200 1_555 F O HOH . A HOH 278 2_656 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? 
#
_chem_comp.formula           'C9 H13 N5 O3' 
_chem_comp.formula_weight    239.231 
_chem_comp.id                HBI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              7,8-DIHYDROBIOPTERIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 HBI doub 129 n y 
N1 C8A HBI sing 130 n y 
N2 C2 HBI sing 131 n n 
N2 HN21 HBI sing 132 n n 
N2 HN22 HBI sing 133 n n 
C2 N3 HBI sing 134 n y 
N3 C4 HBI sing 135 n y 
N3 H3 HBI sing 136 n n 
C4 O4 HBI doub 137 n n 
C4 C4A HBI sing 138 n y 
C4A C8A HBI doub 139 n y 
C4A N5 HBI sing 140 n n 
C8A N8 HBI sing 141 n n 
N8 C7 HBI sing 142 n n 
N8 H8 HBI sing 143 n n 
C7 C6 HBI sing 144 n n 
C7 H71 HBI sing 145 n n 
C7 H72 HBI sing 146 n n 
C6 N5 HBI doub 147 n n 
C6 C9 HBI sing 148 n n 
C9 O9 HBI sing 149 n n 
C9 C10 HBI sing 150 n n 
C9 H9 HBI sing 151 n n 
O9 HO9 HBI sing 152 n n 
C10 O10 HBI sing 153 n n 
C10 C11 HBI sing 154 n n 
C10 H10 HBI sing 155 n n 
O10 HO1 HBI sing 156 n n 
C11 H111 HBI sing 157 n n 
C11 H112 HBI sing 158 n n 
C11 H113 HBI sing 159 n n 
#
_atom_sites.entry_id                     1DR4 
_atom_sites.fract_transf_matrix[1][1]    0.011226 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.007802 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020708 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018934 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HG A 1 190 11 HG HG . 
C 3 CA A 1 200 200 CA CA . 
D 4 NAP A 1 191 191 NAP NAP . 
E 5 HBI A 1 198 198 HBI BIO . 
F 6 HOH A 1 202 202 HOH HOH . 
F 6 HOH A 2 203 203 HOH HOH . 
F 6 HOH A 3 205 205 HOH HOH . 
F 6 HOH A 4 220 220 HOH HOH . 
F 6 HOH A 5 230 230 HOH HOH . 
F 6 HOH A 6 233 233 HOH HOH . 
F 6 HOH A 7 240 240 HOH HOH . 
F 6 HOH A 8 257 257 HOH HOH . 
F 6 HOH A 9 265 265 HOH HOH . 
F 6 HOH A 10 278 278 HOH HOH . 
F 6 HOH A 11 279 279 HOH HOH . 
F 6 HOH A 12 295 295 HOH HOH . 
F 6 HOH A 13 318 318 HOH HOH . 
F 6 HOH A 14 330 330 HOH HOH . 
F 6 HOH A 15 335 335 HOH HOH . 
F 6 HOH A 16 339 339 HOH HOH . 
F 6 HOH A 17 342 342 HOH HOH . 
F 6 HOH A 18 346 346 HOH HOH . 
F 6 HOH A 19 358 358 HOH HOH . 
F 6 HOH A 20 365 365 HOH HOH . 
F 6 HOH A 21 367 367 HOH HOH . 
F 6 HOH A 22 368 368 HOH HOH . 
F 6 HOH A 23 379 379 HOH HOH . 
F 6 HOH A 24 392 392 HOH HOH . 
F 6 HOH A 25 393 393 HOH HOH . 
F 6 HOH A 26 424 424 HOH HOH . 
F 6 HOH A 27 427 427 HOH HOH . 
F 6 HOH A 28 430 430 HOH HOH . 
F 6 HOH A 29 440 440 HOH HOH . 
F 6 HOH A 30 455 455 HOH HOH . 
F 6 HOH A 31 463 463 HOH HOH . 
F 6 HOH A 32 493 493 HOH HOH . 
F 6 HOH A 33 539 539 HOH HOH . 
F 6 HOH A 34 546 546 HOH HOH . 
F 6 HOH A 35 547 547 HOH HOH . 
F 6 HOH A 36 551 551 HOH HOH . 
F 6 HOH A 37 584 584 HOH HOH . 
F 6 HOH A 38 585 585 HOH HOH . 
F 6 HOH A 39 601 601 HOH HOH . 
F 6 HOH A 40 602 602 HOH HOH . 
F 6 HOH A 41 603 603 HOH HOH . 
F 6 HOH A 42 604 604 HOH HOH . 
F 6 HOH A 43 605 605 HOH HOH . 
F 6 HOH A 44 606 606 HOH HOH . 
F 6 HOH A 45 607 607 HOH HOH . 
F 6 HOH A 46 608 608 HOH HOH . 
F 6 HOH A 47 609 609 HOH HOH . 
F 6 HOH A 48 610 610 HOH HOH . 
F 6 HOH A 49 611 611 HOH HOH . 
F 6 HOH A 50 612 612 HOH HOH . 
F 6 HOH A 51 613 613 HOH HOH . 
F 6 HOH A 52 614 614 HOH HOH . 
F 6 HOH A 53 615 615 HOH HOH . 
F 6 HOH A 54 617 617 HOH HOH . 
F 6 HOH A 55 618 618 HOH HOH . 
F 6 HOH A 56 619 619 HOH HOH . 
F 6 HOH A 57 620 620 HOH HOH . 
F 6 HOH A 58 621 621 HOH HOH . 
F 6 HOH A 59 622 622 HOH HOH . 
F 6 HOH A 60 623 623 HOH HOH . 
F 6 HOH A 61 624 624 HOH HOH . 
F 6 HOH A 62 626 626 HOH HOH . 
F 6 HOH A 63 627 627 HOH HOH . 
F 6 HOH A 64 630 630 HOH HOH . 
F 6 HOH A 65 637 637 HOH HOH . 
F 6 HOH A 66 644 644 HOH HOH . 
F 6 HOH A 67 647 647 HOH HOH . 
F 6 HOH A 68 648 648 HOH HOH . 
F 6 HOH A 69 652 652 HOH HOH . 
F 6 HOH A 70 655 655 HOH HOH . 
F 6 HOH A 71 662 662 HOH HOH . 
F 6 HOH A 72 667 667 HOH HOH . 
F 6 HOH A 73 670 670 HOH HOH . 
F 6 HOH A 74 672 672 HOH HOH . 
F 6 HOH A 75 705 705 HOH HOH . 
F 6 HOH A 76 733 733 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 HBI . . . E 5 15.832 5.249 5.976 1 25.9 ? N1 HBI 198 A 1 
HETATM 2 N N2 HBI . . . E 5 15.559 4.54 3.704 1 23.68 ? N2 HBI 198 A 1 
HETATM 3 C C2 HBI . . . E 5 16.186 5.358 4.584 1 25.18 ? C2 HBI 198 A 1 
HETATM 4 N N3 HBI . . . E 5 17.051 6.335 4.209 1 22 ? N3 HBI 198 A 1 
HETATM 5 C C4 HBI . . . E 5 17.741 7.226 4.997 1 15.7 ? C4 HBI 198 A 1 
HETATM 6 O O4 HBI . . . E 5 18.595 8.071 4.531 1 21.94 ? O4 HBI 198 A 1 
HETATM 7 C C4A HBI . . . E 5 17.447 7.015 6.387 1 21.48 ? C4A HBI 198 A 1 
HETATM 8 C C8A HBI . . . E 5 16.527 6.077 6.822 1 20 ? C8A HBI 198 A 1 
HETATM 9 N N8 HBI . . . E 5 16.249 5.828 8.126 1 27.32 ? N8 HBI 198 A 1 
HETATM 10 C C7 HBI . . . E 5 16.79 6.636 8.952 1 26.25 ? C7 HBI 198 A 1 
HETATM 11 C C6 HBI . . . E 5 17.678 7.649 8.659 1 26.06 ? C6 HBI 198 A 1 
HETATM 12 N N5 HBI . . . E 5 18.033 7.811 7.32 1 22.39 ? N5 HBI 198 A 1 
HETATM 13 C C9 HBI . . . E 5 18.362 8.5 9.698 1 28.23 ? C9 HBI 198 A 1 
HETATM 14 O O9 HBI . . . E 5 19.749 8.453 9.407 1 25.83 ? O9 HBI 198 A 1 
HETATM 15 C C10 HBI . . . E 5 17.941 9.947 9.913 1 28.53 ? C10 HBI 198 A 1 
HETATM 16 O O10 HBI . . . E 5 18.203 10.643 8.628 1 36.44 ? O10 HBI 198 A 1 
HETATM 17 C C11 HBI . . . E 5 16.474 9.907 10.198 1 30.27 ? C11 HBI 198 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           447 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           17 
#