data_1DR4 # _model_server_result.job_id dV84zDTLUXHQaqftcvuSgg _model_server_result.datetime_utc '2025-03-04 09:44:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1dr4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":200}' # _entry.id 1DR4 # _exptl.entry_id 1DR4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 124.8 _cell.angle_gamma 90 _cell.entry_id 1DR4 _cell.length_a 89.08 _cell.length_b 48.29 _cell.length_c 64.32 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DR4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1 A,B,C,D,E,F 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 52.371703 0 52.816317 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 11 A CYS 11 1_555 B HG HG . A HG 190 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.436 ? metalc ? metalc2 A SG CYS 11 A CYS 11 1_555 B HG HG . A HG 190 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.476 ? metalc ? metalc3 A OD1 ASN 13 A ASN 13 1_555 B HG HG . A HG 190 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.906 ? metalc ? metalc4 A ND2 ASN 13 A ASN 13 1_555 B HG HG . A HG 190 1_555 ? ? ? ? A ? ? ? ? ? ? ? 3.016 ? metalc ? metalc5 A O GLY 15 A GLY 15 1_555 B HG HG . A HG 190 1_555 ? ? ? ? B ? ? ? ? ? ? ? 3.469 ? metalc ? metalc6 A OE2 GLU 78 A GLU 78 1_555 C CA CA . A CA 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.957 ? metalc ? metalc7 A OE2 GLU 78 A GLU 78 2_656 C CA CA . A CA 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc8 A N PHE 142 A PHE 142 1_555 B HG HG . A HG 190 1_555 ? ? ? ? A ? ? ? ? ? ? ? 3.108 ? metalc ? metalc9 A O PHE 142 A PHE 142 1_555 B HG HG . A HG 190 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.884 ? metalc ? metalc10 A O PHE 142 A PHE 142 1_555 B HG HG . A HG 190 1_555 ? ? ? ? B ? ? ? ? ? ? ? 3.289 ? metalc ? metalc11 A OG SER 144 A SER 144 1_555 B HG HG . A HG 190 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.509 ? metalc ? metalc12 B HG HG . A HG 190 1_555 F O HOH . A HOH 705 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.947 ? metalc ? metalc13 B HG HG . A HG 190 1_555 F O HOH . A HOH 705 1_555 ? B ? ? ? ? ? ? ? ? ? ? 3.326 ? metalc ? metalc14 D O1X NAP . A NAP 191 1_555 C CA CA . A CA 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? metalc ? metalc15 D O1X NAP . A NAP 191 2_656 C CA CA . A CA 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc16 C CA CA . A CA 200 1_555 F O HOH . A HOH 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc17 C CA CA . A CA 200 1_555 F O HOH . A HOH 278 2_656 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1DR4 _atom_sites.fract_transf_matrix[1][1] 0.011226 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007802 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020708 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018934 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HG A 1 190 11 HG HG . C 3 CA A 1 200 200 CA CA . D 4 NAP A 1 191 191 NAP NAP . E 5 HBI A 1 198 198 HBI BIO . F 6 HOH A 1 202 202 HOH HOH . F 6 HOH A 2 203 203 HOH HOH . F 6 HOH A 3 205 205 HOH HOH . F 6 HOH A 4 220 220 HOH HOH . F 6 HOH A 5 230 230 HOH HOH . F 6 HOH A 6 233 233 HOH HOH . F 6 HOH A 7 240 240 HOH HOH . F 6 HOH A 8 257 257 HOH HOH . F 6 HOH A 9 265 265 HOH HOH . F 6 HOH A 10 278 278 HOH HOH . F 6 HOH A 11 279 279 HOH HOH . F 6 HOH A 12 295 295 HOH HOH . F 6 HOH A 13 318 318 HOH HOH . F 6 HOH A 14 330 330 HOH HOH . F 6 HOH A 15 335 335 HOH HOH . F 6 HOH A 16 339 339 HOH HOH . F 6 HOH A 17 342 342 HOH HOH . F 6 HOH A 18 346 346 HOH HOH . F 6 HOH A 19 358 358 HOH HOH . F 6 HOH A 20 365 365 HOH HOH . F 6 HOH A 21 367 367 HOH HOH . F 6 HOH A 22 368 368 HOH HOH . F 6 HOH A 23 379 379 HOH HOH . F 6 HOH A 24 392 392 HOH HOH . F 6 HOH A 25 393 393 HOH HOH . F 6 HOH A 26 424 424 HOH HOH . F 6 HOH A 27 427 427 HOH HOH . F 6 HOH A 28 430 430 HOH HOH . F 6 HOH A 29 440 440 HOH HOH . F 6 HOH A 30 455 455 HOH HOH . F 6 HOH A 31 463 463 HOH HOH . F 6 HOH A 32 493 493 HOH HOH . F 6 HOH A 33 539 539 HOH HOH . F 6 HOH A 34 546 546 HOH HOH . F 6 HOH A 35 547 547 HOH HOH . F 6 HOH A 36 551 551 HOH HOH . F 6 HOH A 37 584 584 HOH HOH . F 6 HOH A 38 585 585 HOH HOH . F 6 HOH A 39 601 601 HOH HOH . F 6 HOH A 40 602 602 HOH HOH . F 6 HOH A 41 603 603 HOH HOH . F 6 HOH A 42 604 604 HOH HOH . F 6 HOH A 43 605 605 HOH HOH . F 6 HOH A 44 606 606 HOH HOH . F 6 HOH A 45 607 607 HOH HOH . F 6 HOH A 46 608 608 HOH HOH . F 6 HOH A 47 609 609 HOH HOH . F 6 HOH A 48 610 610 HOH HOH . F 6 HOH A 49 611 611 HOH HOH . F 6 HOH A 50 612 612 HOH HOH . F 6 HOH A 51 613 613 HOH HOH . F 6 HOH A 52 614 614 HOH HOH . F 6 HOH A 53 615 615 HOH HOH . F 6 HOH A 54 617 617 HOH HOH . F 6 HOH A 55 618 618 HOH HOH . F 6 HOH A 56 619 619 HOH HOH . F 6 HOH A 57 620 620 HOH HOH . F 6 HOH A 58 621 621 HOH HOH . F 6 HOH A 59 622 622 HOH HOH . F 6 HOH A 60 623 623 HOH HOH . F 6 HOH A 61 624 624 HOH HOH . F 6 HOH A 62 626 626 HOH HOH . F 6 HOH A 63 627 627 HOH HOH . F 6 HOH A 64 630 630 HOH HOH . F 6 HOH A 65 637 637 HOH HOH . F 6 HOH A 66 644 644 HOH HOH . F 6 HOH A 67 647 647 HOH HOH . F 6 HOH A 68 648 648 HOH HOH . F 6 HOH A 69 652 652 HOH HOH . F 6 HOH A 70 655 655 HOH HOH . F 6 HOH A 71 662 662 HOH HOH . F 6 HOH A 72 667 667 HOH HOH . F 6 HOH A 73 670 670 HOH HOH . F 6 HOH A 74 672 672 HOH HOH . F 6 HOH A 75 705 705 HOH HOH . F 6 HOH A 76 733 733 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 26.098 _atom_site.Cartn_y 6.224 _atom_site.Cartn_z 26.441 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 28.67 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 200 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #