data_1DR6 # _model_server_result.job_id XdfDcCerQ3FCuZcTz00Nsg _model_server_result.datetime_utc '2025-03-04 09:18:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1dr6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":191}' # _entry.id 1DR6 # _exptl.entry_id 1DR6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 124.7 _cell.angle_gamma 90 _cell.entry_id 1DR6 _cell.length_a 88.72 _cell.length_b 48.74 _cell.length_c 63.87 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DR6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 11 A CYS 11 1_555 E HG MBO . A MBO 201 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.482 ? metalc ? metalc2 A SG CYS 11 A CYS 11 1_555 E HG MBO . A MBO 201 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.432 ? metalc ? metalc3 C O1X NAP . A NAP 191 1_555 B CA CA . A CA 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc4 B CA CA . A CA 200 1_555 F O HOH . A HOH 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc5 B CA CA . A CA 200 1_555 F O HOH . A HOH 672 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.986 ? # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 283 n n PA O2A NAP sing 284 n n PA O5B NAP sing 285 n n PA O3 NAP sing 286 n n O2A HOA2 NAP sing 287 n n O5B C5B NAP sing 288 n n C5B C4B NAP sing 289 n n C5B H51A NAP sing 290 n n C5B H52A NAP sing 291 n n C4B O4B NAP sing 292 n n C4B C3B NAP sing 293 n n C4B H4B NAP sing 294 n n O4B C1B NAP sing 295 n n C3B O3B NAP sing 296 n n C3B C2B NAP sing 297 n n C3B H3B NAP sing 298 n n O3B HO3A NAP sing 299 n n C2B O2B NAP sing 300 n n C2B C1B NAP sing 301 n n C2B H2B NAP sing 302 n n O2B P2B NAP sing 303 n n C1B N9A NAP sing 304 n n C1B H1B NAP sing 305 n n N9A C8A NAP sing 306 n y N9A C4A NAP sing 307 n y C8A N7A NAP doub 308 n y C8A H8A NAP sing 309 n n N7A C5A NAP sing 310 n y C5A C6A NAP sing 311 n y C5A C4A NAP doub 312 n y C6A N6A NAP sing 313 n n C6A N1A NAP doub 314 n y N6A H61A NAP sing 315 n n N6A H62A NAP sing 316 n n N1A C2A NAP sing 317 n y C2A N3A NAP doub 318 n y C2A H2A NAP sing 319 n n N3A C4A NAP sing 320 n y O3 PN NAP sing 321 n n PN O1N NAP doub 322 n n PN O2N NAP sing 323 n n PN O5D NAP sing 324 n n O5D C5D NAP sing 325 n n C5D C4D NAP sing 326 n n C5D H51N NAP sing 327 n n C5D H52N NAP sing 328 n n C4D O4D NAP sing 329 n n C4D C3D NAP sing 330 n n C4D H4D NAP sing 331 n n O4D C1D NAP sing 332 n n C3D O3D NAP sing 333 n n C3D C2D NAP sing 334 n n C3D H3D NAP sing 335 n n O3D HO3N NAP sing 336 n n C2D O2D NAP sing 337 n n C2D C1D NAP sing 338 n n C2D H2D NAP sing 339 n n O2D HO2N NAP sing 340 n n C1D N1N NAP sing 341 n n C1D H1D NAP sing 342 n n N1N C2N NAP sing 343 n y N1N C6N NAP doub 344 n y C2N C3N NAP doub 345 n y C2N H2N NAP sing 346 n n C3N C7N NAP sing 347 n n C3N C4N NAP sing 348 n y C7N O7N NAP doub 349 n n C7N N7N NAP sing 350 n n N7N H71N NAP sing 351 n n N7N H72N NAP sing 352 n n C4N C5N NAP doub 353 n y C4N H4N NAP sing 354 n n C5N C6N NAP sing 355 n y C5N H5N NAP sing 356 n n C6N H6N NAP sing 357 n n P2B O1X NAP doub 358 n n P2B O2X NAP sing 359 n n P2B O3X NAP sing 360 n n O2X HOP2 NAP sing 361 n n O3X HOP3 NAP sing 362 n n # _atom_sites.entry_id 1DR6 _atom_sites.fract_transf_matrix[1][1] 0.011271 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007805 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020517 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019044 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 200 200 CA CA . C 3 NAP A 1 191 191 NAP NAP . D 4 HBI A 1 198 198 HBI BIO . E 5 MBO A 1 201 11 MBO MBO . F 6 HOH A 1 203 203 HOH HOH . F 6 HOH A 2 205 205 HOH HOH . F 6 HOH A 3 220 220 HOH HOH . F 6 HOH A 4 230 230 HOH HOH . F 6 HOH A 5 233 233 HOH HOH . F 6 HOH A 6 240 240 HOH HOH . F 6 HOH A 7 257 257 HOH HOH . F 6 HOH A 8 278 278 HOH HOH . F 6 HOH A 9 279 279 HOH HOH . F 6 HOH A 10 295 295 HOH HOH . F 6 HOH A 11 318 318 HOH HOH . F 6 HOH A 12 330 330 HOH HOH . F 6 HOH A 13 335 335 HOH HOH . F 6 HOH A 14 342 342 HOH HOH . F 6 HOH A 15 346 346 HOH HOH . F 6 HOH A 16 358 358 HOH HOH . F 6 HOH A 17 367 367 HOH HOH . F 6 HOH A 18 392 392 HOH HOH . F 6 HOH A 19 393 393 HOH HOH . F 6 HOH A 20 424 424 HOH HOH . F 6 HOH A 21 427 427 HOH HOH . F 6 HOH A 22 430 430 HOH HOH . F 6 HOH A 23 440 440 HOH HOH . F 6 HOH A 24 463 463 HOH HOH . F 6 HOH A 25 493 493 HOH HOH . F 6 HOH A 26 551 551 HOH HOH . F 6 HOH A 27 584 584 HOH HOH . F 6 HOH A 28 585 585 HOH HOH . F 6 HOH A 29 601 601 HOH HOH . F 6 HOH A 30 602 602 HOH HOH . F 6 HOH A 31 605 605 HOH HOH . F 6 HOH A 32 606 606 HOH HOH . F 6 HOH A 33 607 607 HOH HOH . F 6 HOH A 34 608 608 HOH HOH . F 6 HOH A 35 609 609 HOH HOH . F 6 HOH A 36 610 610 HOH HOH . F 6 HOH A 37 611 611 HOH HOH . F 6 HOH A 38 612 612 HOH HOH . F 6 HOH A 39 614 614 HOH HOH . F 6 HOH A 40 615 615 HOH HOH . F 6 HOH A 41 617 617 HOH HOH . F 6 HOH A 42 619 619 HOH HOH . F 6 HOH A 43 623 623 HOH HOH . F 6 HOH A 44 627 627 HOH HOH . F 6 HOH A 45 630 630 HOH HOH . F 6 HOH A 46 637 637 HOH HOH . F 6 HOH A 47 644 644 HOH HOH . F 6 HOH A 48 647 647 HOH HOH . F 6 HOH A 49 648 648 HOH HOH . F 6 HOH A 50 652 652 HOH HOH . F 6 HOH A 51 655 655 HOH HOH . F 6 HOH A 52 662 662 HOH HOH . F 6 HOH A 53 672 672 HOH HOH . F 6 HOH A 54 691 691 HOH HOH . F 6 HOH A 55 693 693 HOH HOH . F 6 HOH A 56 710 710 HOH HOH . F 6 HOH A 57 711 711 HOH HOH . F 6 HOH A 58 715 715 HOH HOH . F 6 HOH A 59 720 720 HOH HOH . F 6 HOH A 60 738 738 HOH HOH . F 6 HOH A 61 740 740 HOH HOH . F 6 HOH A 62 753 753 HOH HOH . F 6 HOH A 63 756 756 HOH HOH . F 6 HOH A 64 759 759 HOH HOH . F 6 HOH A 65 760 760 HOH HOH . F 6 HOH A 66 764 764 HOH HOH . F 6 HOH A 67 765 765 HOH HOH . F 6 HOH A 68 766 766 HOH HOH . F 6 HOH A 69 780 780 HOH HOH . F 6 HOH A 70 799 799 HOH HOH . F 6 HOH A 71 804 804 HOH HOH . F 6 HOH A 72 814 814 HOH HOH . F 6 HOH A 73 822 822 HOH HOH . F 6 HOH A 74 823 823 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . C 3 21.88 5.333 17.89 1 24.05 ? PA NAP 191 A 1 HETATM 2 O O1A NAP . . . C 3 21.11 4.031 18.009 1 17.6 ? O1A NAP 191 A 1 HETATM 3 O O2A NAP . . . C 3 21.229 6.242 16.865 1 27.93 ? O2A NAP 191 A 1 HETATM 4 O O5B NAP . . . C 3 22.127 6.1 19.287 1 26.46 ? O5B NAP 191 A 1 HETATM 5 C C5B NAP . . . C 3 22.593 5.319 20.393 1 21.92 ? C5B NAP 191 A 1 HETATM 6 C C4B NAP . . . C 3 22.171 5.753 21.731 1 22.62 ? C4B NAP 191 A 1 HETATM 7 O O4B NAP . . . C 3 21.057 5.893 21.837 1 21.26 ? O4B NAP 191 A 1 HETATM 8 C C3B NAP . . . C 3 22.643 4.66 22.808 1 21.13 ? C3B NAP 191 A 1 HETATM 9 O O3B NAP . . . C 3 23.959 5.234 23.249 1 25.03 ? O3B NAP 191 A 1 HETATM 10 C C2B NAP . . . C 3 21.621 5.139 23.887 1 25.36 ? C2B NAP 191 A 1 HETATM 11 O O2B NAP . . . C 3 21.992 6.457 24.253 1 29.86 ? O2B NAP 191 A 1 HETATM 12 C C1B NAP . . . C 3 20.423 5.29 23.021 1 22.06 ? C1B NAP 191 A 1 HETATM 13 N N9A NAP . . . C 3 19.786 3.996 22.648 1 18.52 ? N9A NAP 191 A 1 HETATM 14 C C8A NAP . . . C 3 20.052 3.311 21.546 1 24.61 ? C8A NAP 191 A 1 HETATM 15 N N7A NAP . . . C 3 19.337 2.2 21.487 1 27.12 ? N7A NAP 191 A 1 HETATM 16 C C5A NAP . . . C 3 18.595 2.251 22.713 1 18.33 ? C5A NAP 191 A 1 HETATM 17 C C6A NAP . . . C 3 17.537 1.346 23.405 1 22.41 ? C6A NAP 191 A 1 HETATM 18 N N6A NAP . . . C 3 17.073 0.17 22.902 1 23.26 ? N6A NAP 191 A 1 HETATM 19 N N1A NAP . . . C 3 17.075 1.68 24.613 1 24.68 ? N1A NAP 191 A 1 HETATM 20 C C2A NAP . . . C 3 17.617 2.823 25.078 1 24.99 ? C2A NAP 191 A 1 HETATM 21 N N3A NAP . . . C 3 18.492 3.692 24.595 1 27.63 ? N3A NAP 191 A 1 HETATM 22 C C4A NAP . . . C 3 18.953 3.335 23.378 1 23.9 ? C4A NAP 191 A 1 HETATM 23 O O3 NAP . . . C 3 23.303 5.121 17.332 1 24.23 ? O3 NAP 191 A 1 HETATM 24 P PN NAP . . . C 3 24.087 4.358 16.168 1 22.57 ? PN NAP 191 A 1 HETATM 25 O O1N NAP . . . C 3 23.725 2.974 16.02 1 23.19 ? O1N NAP 191 A 1 HETATM 26 O O2N NAP . . . C 3 25.505 4.608 16.323 1 23.39 ? O2N NAP 191 A 1 HETATM 27 O O5D NAP . . . C 3 23.508 5.055 14.828 1 22.13 ? O5D NAP 191 A 1 HETATM 28 C C5D NAP . . . C 3 23.754 6.457 14.477 1 18.12 ? C5D NAP 191 A 1 HETATM 29 C C4D NAP . . . C 3 24.459 6.377 13.154 1 19.98 ? C4D NAP 191 A 1 HETATM 30 O O4D NAP . . . C 3 23.78 5.512 12.246 1 16.47 ? O4D NAP 191 A 1 HETATM 31 C C3D NAP . . . C 3 24.739 7.711 12.363 1 18.11 ? C3D NAP 191 A 1 HETATM 32 O O3D NAP . . . C 3 25.907 7.433 11.487 1 20.68 ? O3D NAP 191 A 1 HETATM 33 C C2D NAP . . . C 3 23.482 7.723 11.443 1 16.32 ? C2D NAP 191 A 1 HETATM 34 O O2D NAP . . . C 3 23.885 8.535 10.318 1 17.71 ? O2D NAP 191 A 1 HETATM 35 C C1D NAP . . . C 3 23.436 6.268 11.02 1 18.46 ? C1D NAP 191 A 1 HETATM 36 N N1N NAP . . . C 3 22 5.931 10.544 1 16.6 ? N1N NAP 191 A 1 HETATM 37 C C2N NAP . . . C 3 21.682 5.405 9.294 1 16.69 ? C2N NAP 191 A 1 HETATM 38 C C3N NAP . . . C 3 20.401 5.031 9.025 1 16.58 ? C3N NAP 191 A 1 HETATM 39 C C7N NAP . . . C 3 20.143 4.502 7.699 1 13.67 ? C7N NAP 191 A 1 HETATM 40 O O7N NAP . . . C 3 18.961 4.195 7.419 1 15.76 ? O7N NAP 191 A 1 HETATM 41 N N7N NAP . . . C 3 21.132 4.371 6.822 1 14.82 ? N7N NAP 191 A 1 HETATM 42 C C4N NAP . . . C 3 19.238 5.149 10.039 1 13.94 ? C4N NAP 191 A 1 HETATM 43 C C5N NAP . . . C 3 19.78 5.7 11.355 1 15.01 ? C5N NAP 191 A 1 HETATM 44 C C6N NAP . . . C 3 21.042 6.018 11.535 1 5.92 ? C6N NAP 191 A 1 HETATM 45 P P2B NAP . . . C 3 22.603 6.784 25.65 1 26.63 ? P2B NAP 191 A 1 HETATM 46 O O1X NAP . . . C 3 24.096 6.625 25.524 1 21.74 ? O1X NAP 191 A 1 HETATM 47 O O2X NAP . . . C 3 21.911 5.836 26.596 1 17 ? O2X NAP 191 A 1 HETATM 48 O O3X NAP . . . C 3 22.209 8.209 26.071 1 21.79 ? O3X NAP 191 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 48 #