data_1DR6 # _model_server_result.job_id 9yUZNOPIIalth2cu2FQnsQ _model_server_result.datetime_utc '2025-03-04 09:34:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1dr6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":198}' # _entry.id 1DR6 # _exptl.entry_id 1DR6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 239.231 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 7,8-DIHYDROBIOPTERIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 124.7 _cell.angle_gamma 90 _cell.entry_id 1DR6 _cell.length_a 88.72 _cell.length_b 48.74 _cell.length_c 63.87 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DR6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 11 A CYS 11 1_555 E HG MBO . A MBO 201 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.482 ? metalc ? metalc2 A SG CYS 11 A CYS 11 1_555 E HG MBO . A MBO 201 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.432 ? metalc ? metalc3 C O1X NAP . A NAP 191 1_555 B CA CA . A CA 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc4 B CA CA . A CA 200 1_555 F O HOH . A HOH 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc5 B CA CA . A CA 200 1_555 F O HOH . A HOH 672 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.986 ? # _chem_comp.formula 'C9 H13 N5 O3' _chem_comp.formula_weight 239.231 _chem_comp.id HBI _chem_comp.mon_nstd_flag . _chem_comp.name 7,8-DIHYDROBIOPTERIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 HBI doub 129 n y N1 C8A HBI sing 130 n y N2 C2 HBI sing 131 n n N2 HN21 HBI sing 132 n n N2 HN22 HBI sing 133 n n C2 N3 HBI sing 134 n y N3 C4 HBI sing 135 n y N3 H3 HBI sing 136 n n C4 O4 HBI doub 137 n n C4 C4A HBI sing 138 n y C4A C8A HBI doub 139 n y C4A N5 HBI sing 140 n n C8A N8 HBI sing 141 n n N8 C7 HBI sing 142 n n N8 H8 HBI sing 143 n n C7 C6 HBI sing 144 n n C7 H71 HBI sing 145 n n C7 H72 HBI sing 146 n n C6 N5 HBI doub 147 n n C6 C9 HBI sing 148 n n C9 O9 HBI sing 149 n n C9 C10 HBI sing 150 n n C9 H9 HBI sing 151 n n O9 HO9 HBI sing 152 n n C10 O10 HBI sing 153 n n C10 C11 HBI sing 154 n n C10 H10 HBI sing 155 n n O10 HO1 HBI sing 156 n n C11 H111 HBI sing 157 n n C11 H112 HBI sing 158 n n C11 H113 HBI sing 159 n n # _atom_sites.entry_id 1DR6 _atom_sites.fract_transf_matrix[1][1] 0.011271 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007805 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020517 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019044 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 200 200 CA CA . C 3 NAP A 1 191 191 NAP NAP . D 4 HBI A 1 198 198 HBI BIO . E 5 MBO A 1 201 11 MBO MBO . F 6 HOH A 1 203 203 HOH HOH . F 6 HOH A 2 205 205 HOH HOH . F 6 HOH A 3 220 220 HOH HOH . F 6 HOH A 4 230 230 HOH HOH . F 6 HOH A 5 233 233 HOH HOH . F 6 HOH A 6 240 240 HOH HOH . F 6 HOH A 7 257 257 HOH HOH . F 6 HOH A 8 278 278 HOH HOH . F 6 HOH A 9 279 279 HOH HOH . F 6 HOH A 10 295 295 HOH HOH . F 6 HOH A 11 318 318 HOH HOH . F 6 HOH A 12 330 330 HOH HOH . F 6 HOH A 13 335 335 HOH HOH . F 6 HOH A 14 342 342 HOH HOH . F 6 HOH A 15 346 346 HOH HOH . F 6 HOH A 16 358 358 HOH HOH . F 6 HOH A 17 367 367 HOH HOH . F 6 HOH A 18 392 392 HOH HOH . F 6 HOH A 19 393 393 HOH HOH . F 6 HOH A 20 424 424 HOH HOH . F 6 HOH A 21 427 427 HOH HOH . F 6 HOH A 22 430 430 HOH HOH . F 6 HOH A 23 440 440 HOH HOH . F 6 HOH A 24 463 463 HOH HOH . F 6 HOH A 25 493 493 HOH HOH . F 6 HOH A 26 551 551 HOH HOH . F 6 HOH A 27 584 584 HOH HOH . F 6 HOH A 28 585 585 HOH HOH . F 6 HOH A 29 601 601 HOH HOH . F 6 HOH A 30 602 602 HOH HOH . F 6 HOH A 31 605 605 HOH HOH . F 6 HOH A 32 606 606 HOH HOH . F 6 HOH A 33 607 607 HOH HOH . F 6 HOH A 34 608 608 HOH HOH . F 6 HOH A 35 609 609 HOH HOH . F 6 HOH A 36 610 610 HOH HOH . F 6 HOH A 37 611 611 HOH HOH . F 6 HOH A 38 612 612 HOH HOH . F 6 HOH A 39 614 614 HOH HOH . F 6 HOH A 40 615 615 HOH HOH . F 6 HOH A 41 617 617 HOH HOH . F 6 HOH A 42 619 619 HOH HOH . F 6 HOH A 43 623 623 HOH HOH . F 6 HOH A 44 627 627 HOH HOH . F 6 HOH A 45 630 630 HOH HOH . F 6 HOH A 46 637 637 HOH HOH . F 6 HOH A 47 644 644 HOH HOH . F 6 HOH A 48 647 647 HOH HOH . F 6 HOH A 49 648 648 HOH HOH . F 6 HOH A 50 652 652 HOH HOH . F 6 HOH A 51 655 655 HOH HOH . F 6 HOH A 52 662 662 HOH HOH . F 6 HOH A 53 672 672 HOH HOH . F 6 HOH A 54 691 691 HOH HOH . F 6 HOH A 55 693 693 HOH HOH . F 6 HOH A 56 710 710 HOH HOH . F 6 HOH A 57 711 711 HOH HOH . F 6 HOH A 58 715 715 HOH HOH . F 6 HOH A 59 720 720 HOH HOH . F 6 HOH A 60 738 738 HOH HOH . F 6 HOH A 61 740 740 HOH HOH . F 6 HOH A 62 753 753 HOH HOH . F 6 HOH A 63 756 756 HOH HOH . F 6 HOH A 64 759 759 HOH HOH . F 6 HOH A 65 760 760 HOH HOH . F 6 HOH A 66 764 764 HOH HOH . F 6 HOH A 67 765 765 HOH HOH . F 6 HOH A 68 766 766 HOH HOH . F 6 HOH A 69 780 780 HOH HOH . F 6 HOH A 70 799 799 HOH HOH . F 6 HOH A 71 804 804 HOH HOH . F 6 HOH A 72 814 814 HOH HOH . F 6 HOH A 73 822 822 HOH HOH . F 6 HOH A 74 823 823 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 HBI . . . D 4 15.811 5.318 6.013 1 16.1 ? N1 HBI 198 A 1 HETATM 2 N N2 HBI . . . D 4 15.528 4.618 3.776 1 19.58 ? N2 HBI 198 A 1 HETATM 3 C C2 HBI . . . D 4 16.114 5.476 4.648 1 16.36 ? C2 HBI 198 A 1 HETATM 4 N N3 HBI . . . D 4 17.038 6.416 4.244 1 15.1 ? N3 HBI 198 A 1 HETATM 5 C C4 HBI . . . D 4 17.684 7.329 5.048 1 10.21 ? C4 HBI 198 A 1 HETATM 6 O O4 HBI . . . D 4 18.494 8.246 4.623 1 19.73 ? O4 HBI 198 A 1 HETATM 7 C C4A HBI . . . D 4 17.405 7.077 6.418 1 11.42 ? C4A HBI 198 A 1 HETATM 8 C C8A HBI . . . D 4 16.519 6.122 6.865 1 12.55 ? C8A HBI 198 A 1 HETATM 9 N N8 HBI . . . D 4 16.211 5.903 8.164 1 20.06 ? N8 HBI 198 A 1 HETATM 10 C C7 HBI . . . D 4 16.783 6.734 8.981 1 18.04 ? C7 HBI 198 A 1 HETATM 11 C C6 HBI . . . D 4 17.654 7.751 8.658 1 21.12 ? C6 HBI 198 A 1 HETATM 12 N N5 HBI . . . D 4 17.956 7.906 7.334 1 16.32 ? N5 HBI 198 A 1 HETATM 13 C C9 HBI . . . D 4 18.382 8.678 9.617 1 26.51 ? C9 HBI 198 A 1 HETATM 14 O O9 HBI . . . D 4 19.76 8.602 9.406 1 22.32 ? O9 HBI 198 A 1 HETATM 15 C C10 HBI . . . D 4 17.939 10.114 9.781 1 27.55 ? C10 HBI 198 A 1 HETATM 16 O O10 HBI . . . D 4 17.975 10.768 8.465 1 34.81 ? O10 HBI 198 A 1 HETATM 17 C C11 HBI . . . D 4 16.546 10.06 10.334 1 19.25 ? C11 HBI 198 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 17 #