data_1DR7 # _model_server_result.job_id TiGOfiOkVErRxUQsW8H6cQ _model_server_result.datetime_utc '2025-03-04 09:28:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1dr7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":191}' # _entry.id 1DR7 # _exptl.entry_id 1DR7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 124.4 _cell.angle_gamma 90 _cell.entry_id 1DR7 _cell.length_a 88.72 _cell.length_b 48.74 _cell.length_c 63.87 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DR7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 11 A CYS 11 1_555 D HG MBO . A MBO 201 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.446 ? metalc ? metalc2 A SG CYS 11 A CYS 11 1_555 D HG MBO . A MBO 201 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.441 ? metalc ? metalc3 A OE2 GLU 78 A GLU 78 1_555 B CA CA . A CA 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc4 C O1X NAP . A NAP 191 1_555 B CA CA . A CA 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc5 B CA CA . A CA 200 1_555 E O HOH . A HOH 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 252 n n PA O2A NAP sing 253 n n PA O5B NAP sing 254 n n PA O3 NAP sing 255 n n O2A HOA2 NAP sing 256 n n O5B C5B NAP sing 257 n n C5B C4B NAP sing 258 n n C5B H51A NAP sing 259 n n C5B H52A NAP sing 260 n n C4B O4B NAP sing 261 n n C4B C3B NAP sing 262 n n C4B H4B NAP sing 263 n n O4B C1B NAP sing 264 n n C3B O3B NAP sing 265 n n C3B C2B NAP sing 266 n n C3B H3B NAP sing 267 n n O3B HO3A NAP sing 268 n n C2B O2B NAP sing 269 n n C2B C1B NAP sing 270 n n C2B H2B NAP sing 271 n n O2B P2B NAP sing 272 n n C1B N9A NAP sing 273 n n C1B H1B NAP sing 274 n n N9A C8A NAP sing 275 n y N9A C4A NAP sing 276 n y C8A N7A NAP doub 277 n y C8A H8A NAP sing 278 n n N7A C5A NAP sing 279 n y C5A C6A NAP sing 280 n y C5A C4A NAP doub 281 n y C6A N6A NAP sing 282 n n C6A N1A NAP doub 283 n y N6A H61A NAP sing 284 n n N6A H62A NAP sing 285 n n N1A C2A NAP sing 286 n y C2A N3A NAP doub 287 n y C2A H2A NAP sing 288 n n N3A C4A NAP sing 289 n y O3 PN NAP sing 290 n n PN O1N NAP doub 291 n n PN O2N NAP sing 292 n n PN O5D NAP sing 293 n n O5D C5D NAP sing 294 n n C5D C4D NAP sing 295 n n C5D H51N NAP sing 296 n n C5D H52N NAP sing 297 n n C4D O4D NAP sing 298 n n C4D C3D NAP sing 299 n n C4D H4D NAP sing 300 n n O4D C1D NAP sing 301 n n C3D O3D NAP sing 302 n n C3D C2D NAP sing 303 n n C3D H3D NAP sing 304 n n O3D HO3N NAP sing 305 n n C2D O2D NAP sing 306 n n C2D C1D NAP sing 307 n n C2D H2D NAP sing 308 n n O2D HO2N NAP sing 309 n n C1D N1N NAP sing 310 n n C1D H1D NAP sing 311 n n N1N C2N NAP sing 312 n y N1N C6N NAP doub 313 n y C2N C3N NAP doub 314 n y C2N H2N NAP sing 315 n n C3N C7N NAP sing 316 n n C3N C4N NAP sing 317 n y C7N O7N NAP doub 318 n n C7N N7N NAP sing 319 n n N7N H71N NAP sing 320 n n N7N H72N NAP sing 321 n n C4N C5N NAP doub 322 n y C4N H4N NAP sing 323 n n C5N C6N NAP sing 324 n y C5N H5N NAP sing 325 n n C6N H6N NAP sing 326 n n P2B O1X NAP doub 327 n n P2B O2X NAP sing 328 n n P2B O3X NAP sing 329 n n O2X HOP2 NAP sing 330 n n O3X HOP3 NAP sing 331 n n # _atom_sites.entry_id 1DR7 _atom_sites.fract_transf_matrix[1][1] 0.011271 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007718 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020517 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018975 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 200 200 CA CA . C 3 NAP A 1 191 191 NAP NAP . D 4 MBO A 1 201 11 MBO MBO . E 5 HOH A 1 202 202 HOH HOH . E 5 HOH A 2 205 205 HOH HOH . E 5 HOH A 3 220 220 HOH HOH . E 5 HOH A 4 229 229 HOH HOH . E 5 HOH A 5 230 230 HOH HOH . E 5 HOH A 6 233 233 HOH HOH . E 5 HOH A 7 240 240 HOH HOH . E 5 HOH A 8 257 257 HOH HOH . E 5 HOH A 9 278 278 HOH HOH . E 5 HOH A 10 279 279 HOH HOH . E 5 HOH A 11 295 295 HOH HOH . E 5 HOH A 12 318 318 HOH HOH . E 5 HOH A 13 330 330 HOH HOH . E 5 HOH A 14 335 335 HOH HOH . E 5 HOH A 15 342 342 HOH HOH . E 5 HOH A 16 346 346 HOH HOH . E 5 HOH A 17 358 358 HOH HOH . E 5 HOH A 18 367 367 HOH HOH . E 5 HOH A 19 368 368 HOH HOH . E 5 HOH A 20 392 392 HOH HOH . E 5 HOH A 21 393 393 HOH HOH . E 5 HOH A 22 424 424 HOH HOH . E 5 HOH A 23 427 427 HOH HOH . E 5 HOH A 24 440 440 HOH HOH . E 5 HOH A 25 463 463 HOH HOH . E 5 HOH A 26 493 493 HOH HOH . E 5 HOH A 27 539 539 HOH HOH . E 5 HOH A 28 546 546 HOH HOH . E 5 HOH A 29 551 551 HOH HOH . E 5 HOH A 30 585 585 HOH HOH . E 5 HOH A 31 601 601 HOH HOH . E 5 HOH A 32 602 602 HOH HOH . E 5 HOH A 33 605 605 HOH HOH . E 5 HOH A 34 606 606 HOH HOH . E 5 HOH A 35 607 607 HOH HOH . E 5 HOH A 36 608 608 HOH HOH . E 5 HOH A 37 609 609 HOH HOH . E 5 HOH A 38 612 612 HOH HOH . E 5 HOH A 39 613 613 HOH HOH . E 5 HOH A 40 615 615 HOH HOH . E 5 HOH A 41 617 617 HOH HOH . E 5 HOH A 42 619 619 HOH HOH . E 5 HOH A 43 621 621 HOH HOH . E 5 HOH A 44 623 623 HOH HOH . E 5 HOH A 45 627 627 HOH HOH . E 5 HOH A 46 630 630 HOH HOH . E 5 HOH A 47 631 631 HOH HOH . E 5 HOH A 48 637 637 HOH HOH . E 5 HOH A 49 644 644 HOH HOH . E 5 HOH A 50 647 647 HOH HOH . E 5 HOH A 51 648 648 HOH HOH . E 5 HOH A 52 652 652 HOH HOH . E 5 HOH A 53 653 653 HOH HOH . E 5 HOH A 54 655 655 HOH HOH . E 5 HOH A 55 707 707 HOH HOH . E 5 HOH A 56 708 708 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . C 3 21.971 5.268 17.887 1 26.14 ? PA NAP 191 A 1 HETATM 2 O O1A NAP . . . C 3 21.245 4.021 18.033 1 22.19 ? O1A NAP 191 A 1 HETATM 3 O O2A NAP . . . C 3 21.296 6.311 16.99 1 32.15 ? O2A NAP 191 A 1 HETATM 4 O O5B NAP . . . C 3 22.307 5.98 19.332 1 33.33 ? O5B NAP 191 A 1 HETATM 5 C C5B NAP . . . C 3 22.583 5.017 20.405 1 29.49 ? C5B NAP 191 A 1 HETATM 6 C C4B NAP . . . C 3 22.201 5.556 21.738 1 30.68 ? C4B NAP 191 A 1 HETATM 7 O O4B NAP . . . C 3 21.093 5.713 21.849 1 28.87 ? O4B NAP 191 A 1 HETATM 8 C C3B NAP . . . C 3 22.704 4.485 22.832 1 32.03 ? C3B NAP 191 A 1 HETATM 9 O O3B NAP . . . C 3 24.064 5.036 23.106 1 27.46 ? O3B NAP 191 A 1 HETATM 10 C C2B NAP . . . C 3 21.718 4.985 23.939 1 32.45 ? C2B NAP 191 A 1 HETATM 11 O O2B NAP . . . C 3 22.086 6.252 24.384 1 33.81 ? O2B NAP 191 A 1 HETATM 12 C C1B NAP . . . C 3 20.49 5.149 23.074 1 31.97 ? C1B NAP 191 A 1 HETATM 13 N N9A NAP . . . C 3 19.836 3.85 22.74 1 28.29 ? N9A NAP 191 A 1 HETATM 14 C C8A NAP . . . C 3 20.047 3.163 21.626 1 27.5 ? C8A NAP 191 A 1 HETATM 15 N N7A NAP . . . C 3 19.34 2.041 21.608 1 27.6 ? N7A NAP 191 A 1 HETATM 16 C C5A NAP . . . C 3 18.594 2.152 22.861 1 23.96 ? C5A NAP 191 A 1 HETATM 17 C C6A NAP . . . C 3 17.598 1.242 23.623 1 22.58 ? C6A NAP 191 A 1 HETATM 18 N N6A NAP . . . C 3 17.117 0.065 23.139 1 24.71 ? N6A NAP 191 A 1 HETATM 19 N N1A NAP . . . C 3 17.161 1.624 24.831 1 29.75 ? N1A NAP 191 A 1 HETATM 20 C C2A NAP . . . C 3 17.633 2.808 25.236 1 23.26 ? C2A NAP 191 A 1 HETATM 21 N N3A NAP . . . C 3 18.512 3.644 24.714 1 29.45 ? N3A NAP 191 A 1 HETATM 22 C C4A NAP . . . C 3 18.974 3.237 23.505 1 29.12 ? C4A NAP 191 A 1 HETATM 23 O O3 NAP . . . C 3 23.394 5.097 17.259 1 27.76 ? O3 NAP 191 A 1 HETATM 24 P PN NAP . . . C 3 24.114 4.256 16.116 1 27.41 ? PN NAP 191 A 1 HETATM 25 O O1N NAP . . . C 3 23.722 2.871 16.055 1 22.91 ? O1N NAP 191 A 1 HETATM 26 O O2N NAP . . . C 3 25.533 4.489 16.061 1 30.26 ? O2N NAP 191 A 1 HETATM 27 O O5D NAP . . . C 3 23.462 5.009 14.806 1 24.25 ? O5D NAP 191 A 1 HETATM 28 C C5D NAP . . . C 3 23.873 6.392 14.491 1 24.26 ? C5D NAP 191 A 1 HETATM 29 C C4D NAP . . . C 3 24.618 6.247 13.158 1 25.28 ? C4D NAP 191 A 1 HETATM 30 O O4D NAP . . . C 3 23.786 5.506 12.272 1 22.75 ? O4D NAP 191 A 1 HETATM 31 C C3D NAP . . . C 3 24.935 7.575 12.351 1 26.63 ? C3D NAP 191 A 1 HETATM 32 O O3D NAP . . . C 3 26.073 7.272 11.502 1 26.39 ? O3D NAP 191 A 1 HETATM 33 C C2D NAP . . . C 3 23.644 7.72 11.504 1 25.9 ? C2D NAP 191 A 1 HETATM 34 O O2D NAP . . . C 3 24.002 8.532 10.341 1 27.96 ? O2D NAP 191 A 1 HETATM 35 C C1D NAP . . . C 3 23.426 6.315 11.107 1 26.46 ? C1D NAP 191 A 1 HETATM 36 N N1N NAP . . . C 3 22.014 6.017 10.574 1 29.37 ? N1N NAP 191 A 1 HETATM 37 C C2N NAP . . . C 3 21.726 5.39 9.364 1 21.88 ? C2N NAP 191 A 1 HETATM 38 C C3N NAP . . . C 3 20.466 5.064 9.064 1 23.96 ? C3N NAP 191 A 1 HETATM 39 C C7N NAP . . . C 3 20.224 4.406 7.78 1 20.74 ? C7N NAP 191 A 1 HETATM 40 O O7N NAP . . . C 3 19.034 4.048 7.524 1 24.52 ? O7N NAP 191 A 1 HETATM 41 N N7N NAP . . . C 3 21.219 4.179 6.972 1 20.51 ? N7N NAP 191 A 1 HETATM 42 C C4N NAP . . . C 3 19.257 5.241 10.035 1 20.78 ? C4N NAP 191 A 1 HETATM 43 C C5N NAP . . . C 3 19.761 5.848 11.302 1 21.83 ? C5N NAP 191 A 1 HETATM 44 C C6N NAP . . . C 3 21.003 6.174 11.539 1 23.23 ? C6N NAP 191 A 1 HETATM 45 P P2B NAP . . . C 3 22.699 6.543 25.817 1 31.25 ? P2B NAP 191 A 1 HETATM 46 O O1X NAP . . . C 3 24.215 6.303 25.703 1 28.88 ? O1X NAP 191 A 1 HETATM 47 O O2X NAP . . . C 3 22.057 5.517 26.634 1 25.04 ? O2X NAP 191 A 1 HETATM 48 O O3X NAP . . . C 3 22.392 7.964 26.206 1 23.91 ? O3X NAP 191 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 48 #