data_1DR7 # _model_server_result.job_id 8WezK7t_MdCpalAptApG9g _model_server_result.datetime_utc '2024-12-27 03:23:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1dr7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 1DR7 # _exptl.entry_id 1DR7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 321.703 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MERCURIBENZOIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 124.4 _cell.angle_gamma 90 _cell.entry_id 1DR7 _cell.length_a 88.72 _cell.length_b 48.74 _cell.length_c 63.87 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DR7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 11 A CYS 11 1_555 D HG MBO . A MBO 201 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.446 ? metalc ? metalc2 A SG CYS 11 A CYS 11 1_555 D HG MBO . A MBO 201 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.441 ? metalc ? metalc3 A OE2 GLU 78 A GLU 78 1_555 B CA CA . A CA 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc4 C O1X NAP . A NAP 191 1_555 B CA CA . A CA 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc5 B CA CA . A CA 200 1_555 E O HOH . A HOH 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? # _chem_comp.formula 'C7 H5 Hg O2' _chem_comp.formula_weight 321.703 _chem_comp.id MBO _chem_comp.mon_nstd_flag . _chem_comp.name 'MERCURIBENZOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag HG CE1 MBO sing 218 n n CE1 CE2 MBO sing 219 n y CE1 CE6 MBO doub 220 n y CE2 CE3 MBO doub 221 n y CE2 HE2 MBO sing 222 n n CE3 CE4 MBO sing 223 n y CE3 HE3 MBO sing 224 n n CE4 CE5 MBO doub 225 n y CE4 CZ MBO sing 226 n n CE5 CE6 MBO sing 227 n y CE5 HE5 MBO sing 228 n n CE6 HE6 MBO sing 229 n n CZ OZ1 MBO doub 230 n n CZ OZ2 MBO sing 231 n n OZ2 HZ2 MBO sing 232 n n # _atom_sites.entry_id 1DR7 _atom_sites.fract_transf_matrix[1][1] 0.011271 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007718 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020517 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018975 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 200 200 CA CA . C 3 NAP A 1 191 191 NAP NAP . D 4 MBO A 1 201 11 MBO MBO . E 5 HOH A 1 202 202 HOH HOH . E 5 HOH A 2 205 205 HOH HOH . E 5 HOH A 3 220 220 HOH HOH . E 5 HOH A 4 229 229 HOH HOH . E 5 HOH A 5 230 230 HOH HOH . E 5 HOH A 6 233 233 HOH HOH . E 5 HOH A 7 240 240 HOH HOH . E 5 HOH A 8 257 257 HOH HOH . E 5 HOH A 9 278 278 HOH HOH . E 5 HOH A 10 279 279 HOH HOH . E 5 HOH A 11 295 295 HOH HOH . E 5 HOH A 12 318 318 HOH HOH . E 5 HOH A 13 330 330 HOH HOH . E 5 HOH A 14 335 335 HOH HOH . E 5 HOH A 15 342 342 HOH HOH . E 5 HOH A 16 346 346 HOH HOH . E 5 HOH A 17 358 358 HOH HOH . E 5 HOH A 18 367 367 HOH HOH . E 5 HOH A 19 368 368 HOH HOH . E 5 HOH A 20 392 392 HOH HOH . E 5 HOH A 21 393 393 HOH HOH . E 5 HOH A 22 424 424 HOH HOH . E 5 HOH A 23 427 427 HOH HOH . E 5 HOH A 24 440 440 HOH HOH . E 5 HOH A 25 463 463 HOH HOH . E 5 HOH A 26 493 493 HOH HOH . E 5 HOH A 27 539 539 HOH HOH . E 5 HOH A 28 546 546 HOH HOH . E 5 HOH A 29 551 551 HOH HOH . E 5 HOH A 30 585 585 HOH HOH . E 5 HOH A 31 601 601 HOH HOH . E 5 HOH A 32 602 602 HOH HOH . E 5 HOH A 33 605 605 HOH HOH . E 5 HOH A 34 606 606 HOH HOH . E 5 HOH A 35 607 607 HOH HOH . E 5 HOH A 36 608 608 HOH HOH . E 5 HOH A 37 609 609 HOH HOH . E 5 HOH A 38 612 612 HOH HOH . E 5 HOH A 39 613 613 HOH HOH . E 5 HOH A 40 615 615 HOH HOH . E 5 HOH A 41 617 617 HOH HOH . E 5 HOH A 42 619 619 HOH HOH . E 5 HOH A 43 621 621 HOH HOH . E 5 HOH A 44 623 623 HOH HOH . E 5 HOH A 45 627 627 HOH HOH . E 5 HOH A 46 630 630 HOH HOH . E 5 HOH A 47 631 631 HOH HOH . E 5 HOH A 48 637 637 HOH HOH . E 5 HOH A 49 644 644 HOH HOH . E 5 HOH A 50 647 647 HOH HOH . E 5 HOH A 51 648 648 HOH HOH . E 5 HOH A 52 652 652 HOH HOH . E 5 HOH A 53 653 653 HOH HOH . E 5 HOH A 54 655 655 HOH HOH . E 5 HOH A 55 707 707 HOH HOH . E 5 HOH A 56 708 708 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 HG HG MBO . A . D 4 29.129 -0.832 2.063 0.65 46.8 ? HG MBO 201 A 1 HETATM 2 HG HG MBO . B . D 4 28.683 -0.247 3.013 0.35 45.46 ? HG MBO 201 A 1 HETATM 3 C CE1 MBO . . . D 4 30.811 -1.967 1.679 0.65 52.06 ? CE1 MBO 201 A 1 HETATM 4 C CE2 MBO . . . D 4 30.837 -2.898 0.645 0.65 54.5 ? CE2 MBO 201 A 1 HETATM 5 C CE3 MBO . . . D 4 31.977 -3.661 0.427 0.65 58.64 ? CE3 MBO 201 A 1 HETATM 6 C CE4 MBO . . . D 4 33.095 -3.463 1.25 0.65 64.7 ? CE4 MBO 201 A 1 HETATM 7 C CE5 MBO . . . D 4 33.077 -2.517 2.284 0.65 58.56 ? CE5 MBO 201 A 1 HETATM 8 C CE6 MBO . . . D 4 31.934 -1.767 2.492 0.65 54.3 ? CE6 MBO 201 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 8 #