data_1DRE # _model_server_result.job_id '_ecd0yr3BbA0yfCdwevtvw' _model_server_result.datetime_utc '2024-11-09 02:38:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1dre # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":161}' # _entry.id 1DRE # _exptl.entry_id 1DRE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 454.439 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description METHOTREXATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1DRE _cell.length_a 63 _cell.length_b 63 _cell.length_c 105.8 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DRE _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id ND1 _struct_conn.ptnr1_label_comp_id HIS _struct_conn.ptnr1_label_seq_id 45 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id HIS _struct_conn.ptnr1_auth_seq_id 45 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id O5B _struct_conn.ptnr2_label_comp_id NAP _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id NAP _struct_conn.ptnr2_auth_seq_id 164 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.357 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C20 H22 N8 O5' _chem_comp.formula_weight 454.439 _chem_comp.id MTX _chem_comp.mon_nstd_flag . _chem_comp.name METHOTREXATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1DRE _atom_sites.fract_transf_matrix[1][1] 0.015873 _atom_sites.fract_transf_matrix[1][2] 0.009164 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018329 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009452 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MTX A 1 161 161 MTX MTX . C 3 NAP A 1 164 164 NAP NAP . D 4 HOH A 1 203 203 HOH HOH . D 4 HOH A 2 204 204 HOH HOH . D 4 HOH A 3 205 205 HOH HOH . D 4 HOH A 4 209 209 HOH HOH . D 4 HOH A 5 210 210 HOH HOH . D 4 HOH A 6 211 211 HOH HOH . D 4 HOH A 7 212 212 HOH HOH . D 4 HOH A 8 214 214 HOH HOH . D 4 HOH A 9 215 215 HOH HOH . D 4 HOH A 10 216 216 HOH HOH . D 4 HOH A 11 221 221 HOH HOH . D 4 HOH A 12 222 222 HOH HOH . D 4 HOH A 13 223 223 HOH HOH . D 4 HOH A 14 224 224 HOH HOH . D 4 HOH A 15 225 225 HOH HOH . D 4 HOH A 16 226 226 HOH HOH . D 4 HOH A 17 228 228 HOH HOH . D 4 HOH A 18 229 229 HOH HOH . D 4 HOH A 19 230 230 HOH HOH . D 4 HOH A 20 231 231 HOH HOH . D 4 HOH A 21 232 232 HOH HOH . D 4 HOH A 22 233 233 HOH HOH . D 4 HOH A 23 239 239 HOH HOH . D 4 HOH A 24 240 240 HOH HOH . D 4 HOH A 25 241 241 HOH HOH . D 4 HOH A 26 301 301 HOH HOH . D 4 HOH A 27 304 304 HOH HOH . D 4 HOH A 28 310 310 HOH HOH . D 4 HOH A 29 317 317 HOH HOH . D 4 HOH A 30 318 318 HOH HOH . D 4 HOH A 31 603 603 HOH HOH . D 4 HOH A 32 604 604 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 MTX . . . B 2 19.033 20.746 38.623 1 16.07 ? N1 MTX 161 A 1 HETATM 2 C C2 MTX . . . B 2 17.723 20.477 38.614 1 27.39 ? C2 MTX 161 A 1 HETATM 3 N NA2 MTX . . . B 2 17.049 20.015 39.618 1 28.24 ? NA2 MTX 161 A 1 HETATM 4 N N3 MTX . . . B 2 17.01 20.699 37.402 1 32.87 ? N3 MTX 161 A 1 HETATM 5 C C4 MTX . . . B 2 17.539 21.172 36.232 1 28.62 ? C4 MTX 161 A 1 HETATM 6 N NA4 MTX . . . B 2 16.846 21.359 35.138 1 30.17 ? NA4 MTX 161 A 1 HETATM 7 C C4A MTX . . . B 2 18.961 21.447 36.309 1 21.33 ? C4A MTX 161 A 1 HETATM 8 N N5 MTX . . . B 2 19.577 21.806 35.156 1 24.27 ? N5 MTX 161 A 1 HETATM 9 C C6 MTX . . . B 2 20.919 21.93 35.166 1 27.5 ? C6 MTX 161 A 1 HETATM 10 C C7 MTX . . . B 2 21.562 21.665 36.383 1 26.43 ? C7 MTX 161 A 1 HETATM 11 N N8 MTX . . . B 2 20.956 21.299 37.509 1 31.18 ? N8 MTX 161 A 1 HETATM 12 C C8A MTX . . . B 2 19.616 21.213 37.449 1 21.29 ? C8A MTX 161 A 1 HETATM 13 C C9 MTX . . . B 2 21.563 22.349 33.882 1 28.54 ? C9 MTX 161 A 1 HETATM 14 N N10 MTX . . . B 2 23.044 22.102 33.914 1 20.26 ? N10 MTX 161 A 1 HETATM 15 C CM MTX . . . B 2 23.964 23.255 33.809 1 16.92 ? CM MTX 161 A 1 HETATM 16 C C11 MTX . . . B 2 24.588 18.263 34.444 1 14.86 ? C11 MTX 161 A 1 HETATM 17 C C12 MTX . . . B 2 25.382 19.405 34.422 1 6.31 ? C12 MTX 161 A 1 HETATM 18 C C13 MTX . . . B 2 24.883 20.641 34.247 1 6.05 ? C13 MTX 161 A 1 HETATM 19 C C14 MTX . . . B 2 23.496 20.779 34.093 1 10.98 ? C14 MTX 161 A 1 HETATM 20 C C15 MTX . . . B 2 22.663 19.715 34.104 1 13.76 ? C15 MTX 161 A 1 HETATM 21 C C16 MTX . . . B 2 23.225 18.423 34.287 1 13.68 ? C16 MTX 161 A 1 HETATM 22 C C MTX . . . B 2 25.171 16.928 34.619 1 26.78 ? C MTX 161 A 1 HETATM 23 O O MTX . . . B 2 26.39 16.74 34.698 1 29.29 ? O MTX 161 A 1 HETATM 24 N N MTX . . . B 2 24.413 15.872 34.699 1 27.15 ? N MTX 161 A 1 HETATM 25 C CA MTX . . . B 2 25.001 14.563 35.053 1 32.64 ? CA MTX 161 A 1 HETATM 26 C CT MTX . . . B 2 23.963 13.539 34.706 1 35.8 ? CT MTX 161 A 1 HETATM 27 O O1 MTX . . . B 2 22.724 13.771 34.744 1 33.14 ? O1 MTX 161 A 1 HETATM 28 O O2 MTX . . . B 2 24.448 12.437 34.438 1 44.25 ? O2 MTX 161 A 1 HETATM 29 C CB MTX . . . B 2 25.165 14.501 36.624 1 57.04 ? CB MTX 161 A 1 HETATM 30 C CG MTX . . . B 2 26.597 14.112 37.333 1 71.97 ? CG MTX 161 A 1 HETATM 31 C CD MTX . . . B 2 27.76 15.117 37.02 1 89 ? CD MTX 161 A 1 HETATM 32 O OE1 MTX . . . B 2 28.855 14.508 37.017 1 100 ? OE1 MTX 161 A 1 HETATM 33 O OE2 MTX . . . B 2 27.635 16.331 36.733 1 91.2 ? OE2 MTX 161 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 258 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 33 #