data_1DRE
#
_model_server_result.job_id            X81yPI6TEDcNdViHSk3-Ew 
_model_server_result.datetime_utc      '2025-04-25 21:10:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1dre 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":164}' 
#
_entry.id    1DRE 
#
_exptl.entry_id    1DRE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1DRE 
_cell.length_a            63 
_cell.length_b            63 
_cell.length_c            105.8 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1DRE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 294 n n 
PA O2A NAP sing 295 n n 
PA O5B NAP sing 296 n n 
PA O3 NAP sing 297 n n 
O2A HOA2 NAP sing 298 n n 
O5B C5B NAP sing 299 n n 
C5B C4B NAP sing 300 n n 
C5B H51A NAP sing 301 n n 
C5B H52A NAP sing 302 n n 
C4B O4B NAP sing 303 n n 
C4B C3B NAP sing 304 n n 
C4B H4B NAP sing 305 n n 
O4B C1B NAP sing 306 n n 
C3B O3B NAP sing 307 n n 
C3B C2B NAP sing 308 n n 
C3B H3B NAP sing 309 n n 
O3B HO3A NAP sing 310 n n 
C2B O2B NAP sing 311 n n 
C2B C1B NAP sing 312 n n 
C2B H2B NAP sing 313 n n 
O2B P2B NAP sing 314 n n 
C1B N9A NAP sing 315 n n 
C1B H1B NAP sing 316 n n 
N9A C8A NAP sing 317 n y 
N9A C4A NAP sing 318 n y 
C8A N7A NAP doub 319 n y 
C8A H8A NAP sing 320 n n 
N7A C5A NAP sing 321 n y 
C5A C6A NAP sing 322 n y 
C5A C4A NAP doub 323 n y 
C6A N6A NAP sing 324 n n 
C6A N1A NAP doub 325 n y 
N6A H61A NAP sing 326 n n 
N6A H62A NAP sing 327 n n 
N1A C2A NAP sing 328 n y 
C2A N3A NAP doub 329 n y 
C2A H2A NAP sing 330 n n 
N3A C4A NAP sing 331 n y 
O3 PN NAP sing 332 n n 
PN O1N NAP doub 333 n n 
PN O2N NAP sing 334 n n 
PN O5D NAP sing 335 n n 
O5D C5D NAP sing 336 n n 
C5D C4D NAP sing 337 n n 
C5D H51N NAP sing 338 n n 
C5D H52N NAP sing 339 n n 
C4D O4D NAP sing 340 n n 
C4D C3D NAP sing 341 n n 
C4D H4D NAP sing 342 n n 
O4D C1D NAP sing 343 n n 
C3D O3D NAP sing 344 n n 
C3D C2D NAP sing 345 n n 
C3D H3D NAP sing 346 n n 
O3D HO3N NAP sing 347 n n 
C2D O2D NAP sing 348 n n 
C2D C1D NAP sing 349 n n 
C2D H2D NAP sing 350 n n 
O2D HO2N NAP sing 351 n n 
C1D N1N NAP sing 352 n n 
C1D H1D NAP sing 353 n n 
N1N C2N NAP sing 354 n y 
N1N C6N NAP doub 355 n y 
C2N C3N NAP doub 356 n y 
C2N H2N NAP sing 357 n n 
C3N C7N NAP sing 358 n n 
C3N C4N NAP sing 359 n y 
C7N O7N NAP doub 360 n n 
C7N N7N NAP sing 361 n n 
N7N H71N NAP sing 362 n n 
N7N H72N NAP sing 363 n n 
C4N C5N NAP doub 364 n y 
C4N H4N NAP sing 365 n n 
C5N C6N NAP sing 366 n y 
C5N H5N NAP sing 367 n n 
C6N H6N NAP sing 368 n n 
P2B O1X NAP doub 369 n n 
P2B O2X NAP sing 370 n n 
P2B O3X NAP sing 371 n n 
O2X HOP2 NAP sing 372 n n 
O3X HOP3 NAP sing 373 n n 
#
_atom_sites.entry_id                     1DRE 
_atom_sites.fract_transf_matrix[1][1]    0.015873 
_atom_sites.fract_transf_matrix[1][2]    0.009164 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018329 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009452 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MTX A 1 161 161 MTX MTX . 
C 3 NAP A 1 164 164 NAP NAP . 
D 4 HOH A 1 203 203 HOH HOH . 
D 4 HOH A 2 204 204 HOH HOH . 
D 4 HOH A 3 205 205 HOH HOH . 
D 4 HOH A 4 209 209 HOH HOH . 
D 4 HOH A 5 210 210 HOH HOH . 
D 4 HOH A 6 211 211 HOH HOH . 
D 4 HOH A 7 212 212 HOH HOH . 
D 4 HOH A 8 214 214 HOH HOH . 
D 4 HOH A 9 215 215 HOH HOH . 
D 4 HOH A 10 216 216 HOH HOH . 
D 4 HOH A 11 221 221 HOH HOH . 
D 4 HOH A 12 222 222 HOH HOH . 
D 4 HOH A 13 223 223 HOH HOH . 
D 4 HOH A 14 224 224 HOH HOH . 
D 4 HOH A 15 225 225 HOH HOH . 
D 4 HOH A 16 226 226 HOH HOH . 
D 4 HOH A 17 228 228 HOH HOH . 
D 4 HOH A 18 229 229 HOH HOH . 
D 4 HOH A 19 230 230 HOH HOH . 
D 4 HOH A 20 231 231 HOH HOH . 
D 4 HOH A 21 232 232 HOH HOH . 
D 4 HOH A 22 233 233 HOH HOH . 
D 4 HOH A 23 239 239 HOH HOH . 
D 4 HOH A 24 240 240 HOH HOH . 
D 4 HOH A 25 241 241 HOH HOH . 
D 4 HOH A 26 301 301 HOH HOH . 
D 4 HOH A 27 304 304 HOH HOH . 
D 4 HOH A 28 310 310 HOH HOH . 
D 4 HOH A 29 317 317 HOH HOH . 
D 4 HOH A 30 318 318 HOH HOH . 
D 4 HOH A 31 603 603 HOH HOH . 
D 4 HOH A 32 604 604 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . C 3 17.36 28.712 27.611 1 49.27 ? PA NAP 164 A 1 
HETATM 2 O O1A NAP . . . C 3 15.898 28.616 27.805 1 37.52 ? O1A NAP 164 A 1 
HETATM 3 O O2A NAP . . . C 3 18.214 27.621 28.143 1 50.25 ? O2A NAP 164 A 1 
HETATM 4 O O5B NAP . . . C 3 17.786 29.076 26.12 1 61.38 ? O5B NAP 164 A 1 
HETATM 5 C C5B NAP . . . C 3 16.934 29.877 25.272 1 60.02 ? C5B NAP 164 A 1 
HETATM 6 C C4B NAP . . . C 3 17.085 29.758 23.768 1 56.45 ? C4B NAP 164 A 1 
HETATM 7 O O4B NAP . . . C 3 16.072 28.871 23.274 1 59.77 ? O4B NAP 164 A 1 
HETATM 8 C C3B NAP . . . C 3 16.68 30.948 22.906 1 51.75 ? C3B NAP 164 A 1 
HETATM 9 O O3B NAP . . . C 3 17.738 31.864 23.04 1 48.44 ? O3B NAP 164 A 1 
HETATM 10 C C2B NAP . . . C 3 16.517 30.385 21.498 1 61.06 ? C2B NAP 164 A 1 
HETATM 11 O O2B NAP . . . C 3 17.781 30.107 20.882 1 65.12 ? O2B NAP 164 A 1 
HETATM 12 C C1B NAP . . . C 3 15.943 29.025 21.862 1 62.15 ? C1B NAP 164 A 1 
HETATM 13 N N9A NAP . . . C 3 14.514 28.819 21.864 1 68.58 ? N9A NAP 164 A 1 
HETATM 14 C C8A NAP . . . C 3 13.679 28.89 22.924 1 71.97 ? C8A NAP 164 A 1 
HETATM 15 N N7A NAP . . . C 3 12.43 28.626 22.626 1 74.22 ? N7A NAP 164 A 1 
HETATM 16 C C5A NAP . . . C 3 12.464 28.357 21.28 1 73.79 ? C5A NAP 164 A 1 
HETATM 17 C C6A NAP . . . C 3 11.462 27.998 20.353 1 75.36 ? C6A NAP 164 A 1 
HETATM 18 N N6A NAP . . . C 3 10.163 27.836 20.638 1 74.97 ? N6A NAP 164 A 1 
HETATM 19 N N1A NAP . . . C 3 11.869 27.808 19.105 1 81.79 ? N1A NAP 164 A 1 
HETATM 20 C C2A NAP . . . C 3 13.177 27.975 18.811 1 85.94 ? C2A NAP 164 A 1 
HETATM 21 N N3A NAP . . . C 3 14.198 28.306 19.588 1 83.35 ? N3A NAP 164 A 1 
HETATM 22 C C4A NAP . . . C 3 13.757 28.47 20.816 1 75.82 ? C4A NAP 164 A 1 
HETATM 23 O O3 NAP . . . C 3 17.9 30.134 28.075 1 45.31 ? O3 NAP 164 A 1 
HETATM 24 P PN NAP . . . C 3 17.548 31.093 29.347 1 45.38 ? PN NAP 164 A 1 
HETATM 25 O O1N NAP . . . C 3 16.071 31.192 29.423 1 35.32 ? O1N NAP 164 A 1 
HETATM 26 O O2N NAP . . . C 3 18.376 32.331 29.291 1 31.76 ? O2N NAP 164 A 1 
HETATM 27 O O5D NAP . . . C 3 18.163 30.164 30.5 1 53.52 ? O5D NAP 164 A 1 
HETATM 28 C C5D NAP . . . C 3 19.507 30.343 31.191 1 39.82 ? C5D NAP 164 A 1 
HETATM 29 C C4D NAP . . . C 3 19.594 30.25 32.768 1 23.1 ? C4D NAP 164 A 1 
HETATM 30 O O4D NAP . . . C 3 18.872 29.039 33.223 1 25.79 ? O4D NAP 164 A 1 
HETATM 31 C C3D NAP . . . C 3 20.997 29.733 33.203 1 14.4 ? C3D NAP 164 A 1 
HETATM 32 O O3D NAP . . . C 3 21.845 30.387 34.028 1 28.02 ? O3D NAP 164 A 1 
HETATM 33 C C2D NAP . . . C 3 21.091 28.192 33.345 1 25.6 ? C2D NAP 164 A 1 
HETATM 34 O O2D NAP . . . C 3 22.092 27.747 34.152 1 43.38 ? O2D NAP 164 A 1 
HETATM 35 C C1D NAP . . . C 3 19.749 27.988 33.766 1 23.48 ? C1D NAP 164 A 1 
HETATM 36 N N1N NAP . . . C 3 19.08 26.651 34.066 1 28.99 ? N1N NAP 164 A 1 
HETATM 37 C C2N NAP . . . C 3 18.756 26.328 35.385 1 37.12 ? C2N NAP 164 A 1 
HETATM 38 C C3N NAP . . . C 3 18.133 25.219 35.731 1 36.05 ? C3N NAP 164 A 1 
HETATM 39 C C7N NAP . . . C 3 17.949 25.202 37.177 1 32.18 ? C7N NAP 164 A 1 
HETATM 40 O O7N NAP . . . C 3 17.162 24.428 37.79 1 30.4 ? O7N NAP 164 A 1 
HETATM 41 N N7N NAP . . . C 3 18.461 26.289 37.752 1 26.83 ? N7N NAP 164 A 1 
HETATM 42 C C4N NAP . . . C 3 17.684 24.162 34.68 1 39.24 ? C4N NAP 164 A 1 
HETATM 43 C C5N NAP . . . C 3 18.114 24.679 33.306 1 35.19 ? C5N NAP 164 A 1 
HETATM 44 C C6N NAP . . . C 3 18.716 25.78 33.08 1 32.61 ? C6N NAP 164 A 1 
HETATM 45 P P2B NAP . . . C 3 18.612 30.737 19.664 1 63.99 ? P2B NAP 164 A 1 
HETATM 46 O O1X NAP . . . C 3 18.545 29.457 18.775 1 65.11 ? O1X NAP 164 A 1 
HETATM 47 O O2X NAP . . . C 3 17.923 31.991 19.177 1 76.68 ? O2X NAP 164 A 1 
HETATM 48 O O3X NAP . . . C 3 20.08 31.077 19.933 1 50.02 ? O3X NAP 164 A 1 
#
_model_server_stats.io_time_ms              5 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           48 
#