data_1DRE # _model_server_result.job_id Elz0Vr0A3D-gWHZUKfUFqQ _model_server_result.datetime_utc '2024-11-09 02:21:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1dre # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":164}' # _entry.id 1DRE # _exptl.entry_id 1DRE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1DRE _cell.length_a 63 _cell.length_b 63 _cell.length_c 105.8 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DRE _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id ND1 _struct_conn.ptnr1_label_comp_id HIS _struct_conn.ptnr1_label_seq_id 45 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id HIS _struct_conn.ptnr1_auth_seq_id 45 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id O5B _struct_conn.ptnr2_label_comp_id NAP _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id NAP _struct_conn.ptnr2_auth_seq_id 164 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.357 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # _atom_sites.entry_id 1DRE _atom_sites.fract_transf_matrix[1][1] 0.015873 _atom_sites.fract_transf_matrix[1][2] 0.009164 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018329 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009452 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MTX A 1 161 161 MTX MTX . C 3 NAP A 1 164 164 NAP NAP . D 4 HOH A 1 203 203 HOH HOH . D 4 HOH A 2 204 204 HOH HOH . D 4 HOH A 3 205 205 HOH HOH . D 4 HOH A 4 209 209 HOH HOH . D 4 HOH A 5 210 210 HOH HOH . D 4 HOH A 6 211 211 HOH HOH . D 4 HOH A 7 212 212 HOH HOH . D 4 HOH A 8 214 214 HOH HOH . D 4 HOH A 9 215 215 HOH HOH . D 4 HOH A 10 216 216 HOH HOH . D 4 HOH A 11 221 221 HOH HOH . D 4 HOH A 12 222 222 HOH HOH . D 4 HOH A 13 223 223 HOH HOH . D 4 HOH A 14 224 224 HOH HOH . D 4 HOH A 15 225 225 HOH HOH . D 4 HOH A 16 226 226 HOH HOH . D 4 HOH A 17 228 228 HOH HOH . D 4 HOH A 18 229 229 HOH HOH . D 4 HOH A 19 230 230 HOH HOH . D 4 HOH A 20 231 231 HOH HOH . D 4 HOH A 21 232 232 HOH HOH . D 4 HOH A 22 233 233 HOH HOH . D 4 HOH A 23 239 239 HOH HOH . D 4 HOH A 24 240 240 HOH HOH . D 4 HOH A 25 241 241 HOH HOH . D 4 HOH A 26 301 301 HOH HOH . D 4 HOH A 27 304 304 HOH HOH . D 4 HOH A 28 310 310 HOH HOH . D 4 HOH A 29 317 317 HOH HOH . D 4 HOH A 30 318 318 HOH HOH . D 4 HOH A 31 603 603 HOH HOH . D 4 HOH A 32 604 604 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . C 3 17.36 28.712 27.611 1 49.27 ? PA NAP 164 A 1 HETATM 2 O O1A NAP . . . C 3 15.898 28.616 27.805 1 37.52 ? O1A NAP 164 A 1 HETATM 3 O O2A NAP . . . C 3 18.214 27.621 28.143 1 50.25 ? O2A NAP 164 A 1 HETATM 4 O O5B NAP . . . C 3 17.786 29.076 26.12 1 61.38 ? O5B NAP 164 A 1 HETATM 5 C C5B NAP . . . C 3 16.934 29.877 25.272 1 60.02 ? C5B NAP 164 A 1 HETATM 6 C C4B NAP . . . C 3 17.085 29.758 23.768 1 56.45 ? C4B NAP 164 A 1 HETATM 7 O O4B NAP . . . C 3 16.072 28.871 23.274 1 59.77 ? O4B NAP 164 A 1 HETATM 8 C C3B NAP . . . C 3 16.68 30.948 22.906 1 51.75 ? C3B NAP 164 A 1 HETATM 9 O O3B NAP . . . C 3 17.738 31.864 23.04 1 48.44 ? O3B NAP 164 A 1 HETATM 10 C C2B NAP . . . C 3 16.517 30.385 21.498 1 61.06 ? C2B NAP 164 A 1 HETATM 11 O O2B NAP . . . C 3 17.781 30.107 20.882 1 65.12 ? O2B NAP 164 A 1 HETATM 12 C C1B NAP . . . C 3 15.943 29.025 21.862 1 62.15 ? C1B NAP 164 A 1 HETATM 13 N N9A NAP . . . C 3 14.514 28.819 21.864 1 68.58 ? N9A NAP 164 A 1 HETATM 14 C C8A NAP . . . C 3 13.679 28.89 22.924 1 71.97 ? C8A NAP 164 A 1 HETATM 15 N N7A NAP . . . C 3 12.43 28.626 22.626 1 74.22 ? N7A NAP 164 A 1 HETATM 16 C C5A NAP . . . C 3 12.464 28.357 21.28 1 73.79 ? C5A NAP 164 A 1 HETATM 17 C C6A NAP . . . C 3 11.462 27.998 20.353 1 75.36 ? C6A NAP 164 A 1 HETATM 18 N N6A NAP . . . C 3 10.163 27.836 20.638 1 74.97 ? N6A NAP 164 A 1 HETATM 19 N N1A NAP . . . C 3 11.869 27.808 19.105 1 81.79 ? N1A NAP 164 A 1 HETATM 20 C C2A NAP . . . C 3 13.177 27.975 18.811 1 85.94 ? C2A NAP 164 A 1 HETATM 21 N N3A NAP . . . C 3 14.198 28.306 19.588 1 83.35 ? N3A NAP 164 A 1 HETATM 22 C C4A NAP . . . C 3 13.757 28.47 20.816 1 75.82 ? C4A NAP 164 A 1 HETATM 23 O O3 NAP . . . C 3 17.9 30.134 28.075 1 45.31 ? O3 NAP 164 A 1 HETATM 24 P PN NAP . . . C 3 17.548 31.093 29.347 1 45.38 ? PN NAP 164 A 1 HETATM 25 O O1N NAP . . . C 3 16.071 31.192 29.423 1 35.32 ? O1N NAP 164 A 1 HETATM 26 O O2N NAP . . . C 3 18.376 32.331 29.291 1 31.76 ? O2N NAP 164 A 1 HETATM 27 O O5D NAP . . . C 3 18.163 30.164 30.5 1 53.52 ? O5D NAP 164 A 1 HETATM 28 C C5D NAP . . . C 3 19.507 30.343 31.191 1 39.82 ? C5D NAP 164 A 1 HETATM 29 C C4D NAP . . . C 3 19.594 30.25 32.768 1 23.1 ? C4D NAP 164 A 1 HETATM 30 O O4D NAP . . . C 3 18.872 29.039 33.223 1 25.79 ? O4D NAP 164 A 1 HETATM 31 C C3D NAP . . . C 3 20.997 29.733 33.203 1 14.4 ? C3D NAP 164 A 1 HETATM 32 O O3D NAP . . . C 3 21.845 30.387 34.028 1 28.02 ? O3D NAP 164 A 1 HETATM 33 C C2D NAP . . . C 3 21.091 28.192 33.345 1 25.6 ? C2D NAP 164 A 1 HETATM 34 O O2D NAP . . . C 3 22.092 27.747 34.152 1 43.38 ? O2D NAP 164 A 1 HETATM 35 C C1D NAP . . . C 3 19.749 27.988 33.766 1 23.48 ? C1D NAP 164 A 1 HETATM 36 N N1N NAP . . . C 3 19.08 26.651 34.066 1 28.99 ? N1N NAP 164 A 1 HETATM 37 C C2N NAP . . . C 3 18.756 26.328 35.385 1 37.12 ? C2N NAP 164 A 1 HETATM 38 C C3N NAP . . . C 3 18.133 25.219 35.731 1 36.05 ? C3N NAP 164 A 1 HETATM 39 C C7N NAP . . . C 3 17.949 25.202 37.177 1 32.18 ? C7N NAP 164 A 1 HETATM 40 O O7N NAP . . . C 3 17.162 24.428 37.79 1 30.4 ? O7N NAP 164 A 1 HETATM 41 N N7N NAP . . . C 3 18.461 26.289 37.752 1 26.83 ? N7N NAP 164 A 1 HETATM 42 C C4N NAP . . . C 3 17.684 24.162 34.68 1 39.24 ? C4N NAP 164 A 1 HETATM 43 C C5N NAP . . . C 3 18.114 24.679 33.306 1 35.19 ? C5N NAP 164 A 1 HETATM 44 C C6N NAP . . . C 3 18.716 25.78 33.08 1 32.61 ? C6N NAP 164 A 1 HETATM 45 P P2B NAP . . . C 3 18.612 30.737 19.664 1 63.99 ? P2B NAP 164 A 1 HETATM 46 O O1X NAP . . . C 3 18.545 29.457 18.775 1 65.11 ? O1X NAP 164 A 1 HETATM 47 O O2X NAP . . . C 3 17.923 31.991 19.177 1 76.68 ? O2X NAP 164 A 1 HETATM 48 O O3X NAP . . . C 3 20.08 31.077 19.933 1 50.02 ? O3X NAP 164 A 1 # _model_server_stats.io_time_ms 73 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 48 #