data_1DRJ # _model_server_result.job_id N3IievJGkB-sQlNuOLcoxA _model_server_result.datetime_utc '2024-10-11 06:21:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1drj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":272}' # _entry.id 1DRJ # _exptl.entry_id 1DRJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.13 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description beta-D-ribopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1DRJ _cell.length_a 74.91 _cell.length_b 90.08 _cell.length_c 39.28 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DRJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C5 H10 O5' _chem_comp.formula_weight 150.13 _chem_comp.id RIP _chem_comp.mon_nstd_flag . _chem_comp.name beta-D-ribopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms 'beta-D-ribose;D-ribose;ribose;RIBOSE(PYRANOSE FORM)' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RIP sing 264 n n C1 O1 RIP sing 265 n n C1 O5 RIP sing 266 n n C1 H1 RIP sing 267 n n C2 C3 RIP sing 268 n n C2 O2 RIP sing 269 n n C2 H2 RIP sing 270 n n C3 C4 RIP sing 271 n n C3 O3 RIP sing 272 n n C3 H3 RIP sing 273 n n C4 C5 RIP sing 274 n n C4 O4 RIP sing 275 n n C4 H4 RIP sing 276 n n C5 O5 RIP sing 277 n n C5 H51 RIP sing 278 n n C5 H52 RIP sing 279 n n O1 HO1 RIP sing 280 n n O2 HO2 RIP sing 281 n n O3 HO3 RIP sing 282 n n O4 HO4 RIP sing 283 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version RIP DRibpb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 RIP b-D-ribopyranose 'COMMON NAME' GMML 1 RIP b-D-Ribp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 RIP Rib 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1DRJ _atom_sites.fract_transf_matrix[1][1] 0.013349 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011101 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025458 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RIP A 1 272 1 RIP RIP . C 3 HOH A 1 273 1 HOH HOH . C 3 HOH A 2 274 2 HOH HOH . C 3 HOH A 3 275 3 HOH HOH . C 3 HOH A 4 276 7 HOH HOH . C 3 HOH A 5 277 8 HOH HOH . C 3 HOH A 6 278 9 HOH HOH . C 3 HOH A 7 279 10 HOH HOH . C 3 HOH A 8 280 11 HOH HOH . C 3 HOH A 9 281 12 HOH HOH . C 3 HOH A 10 282 13 HOH HOH . C 3 HOH A 11 283 14 HOH HOH . C 3 HOH A 12 284 15 HOH HOH . C 3 HOH A 13 285 16 HOH HOH . C 3 HOH A 14 286 18 HOH HOH . C 3 HOH A 15 287 19 HOH HOH . C 3 HOH A 16 288 20 HOH HOH . C 3 HOH A 17 289 21 HOH HOH . C 3 HOH A 18 290 22 HOH HOH . C 3 HOH A 19 291 24 HOH HOH . C 3 HOH A 20 292 25 HOH HOH . C 3 HOH A 21 293 26 HOH HOH . C 3 HOH A 22 294 27 HOH HOH . C 3 HOH A 23 295 28 HOH HOH . C 3 HOH A 24 296 29 HOH HOH . C 3 HOH A 25 297 31 HOH HOH . C 3 HOH A 26 298 32 HOH HOH . C 3 HOH A 27 299 33 HOH HOH . C 3 HOH A 28 300 34 HOH HOH . C 3 HOH A 29 301 36 HOH HOH . C 3 HOH A 30 302 37 HOH HOH . C 3 HOH A 31 303 38 HOH HOH . C 3 HOH A 32 304 39 HOH HOH . C 3 HOH A 33 305 40 HOH HOH . C 3 HOH A 34 306 41 HOH HOH . C 3 HOH A 35 307 42 HOH HOH . C 3 HOH A 36 308 44 HOH HOH . C 3 HOH A 37 309 45 HOH HOH . C 3 HOH A 38 310 48 HOH HOH . C 3 HOH A 39 311 49 HOH HOH . C 3 HOH A 40 312 50 HOH HOH . C 3 HOH A 41 313 51 HOH HOH . C 3 HOH A 42 314 52 HOH HOH . C 3 HOH A 43 315 53 HOH HOH . C 3 HOH A 44 316 54 HOH HOH . C 3 HOH A 45 317 55 HOH HOH . C 3 HOH A 46 318 56 HOH HOH . C 3 HOH A 47 319 57 HOH HOH . C 3 HOH A 48 320 60 HOH HOH . C 3 HOH A 49 321 61 HOH HOH . C 3 HOH A 50 322 62 HOH HOH . C 3 HOH A 51 323 65 HOH HOH . C 3 HOH A 52 324 66 HOH HOH . C 3 HOH A 53 325 67 HOH HOH . C 3 HOH A 54 326 68 HOH HOH . C 3 HOH A 55 327 69 HOH HOH . C 3 HOH A 56 328 71 HOH HOH . C 3 HOH A 57 329 73 HOH HOH . C 3 HOH A 58 330 74 HOH HOH . C 3 HOH A 59 331 75 HOH HOH . C 3 HOH A 60 332 76 HOH HOH . C 3 HOH A 61 333 77 HOH HOH . C 3 HOH A 62 334 79 HOH HOH . C 3 HOH A 63 335 80 HOH HOH . C 3 HOH A 64 336 81 HOH HOH . C 3 HOH A 65 337 82 HOH HOH . C 3 HOH A 66 338 83 HOH HOH . C 3 HOH A 67 339 84 HOH HOH . C 3 HOH A 68 340 85 HOH HOH . C 3 HOH A 69 341 86 HOH HOH . C 3 HOH A 70 342 87 HOH HOH . C 3 HOH A 71 343 88 HOH HOH . C 3 HOH A 72 344 89 HOH HOH . C 3 HOH A 73 345 90 HOH HOH . C 3 HOH A 74 346 91 HOH HOH . C 3 HOH A 75 347 92 HOH HOH . C 3 HOH A 76 348 93 HOH HOH . C 3 HOH A 77 349 94 HOH HOH . C 3 HOH A 78 350 95 HOH HOH . C 3 HOH A 79 351 96 HOH HOH . C 3 HOH A 80 352 97 HOH HOH . C 3 HOH A 81 353 98 HOH HOH . C 3 HOH A 82 354 99 HOH HOH . C 3 HOH A 83 355 100 HOH HOH . C 3 HOH A 84 356 102 HOH HOH . C 3 HOH A 85 357 103 HOH HOH . C 3 HOH A 86 358 104 HOH HOH . C 3 HOH A 87 359 105 HOH HOH . C 3 HOH A 88 360 107 HOH HOH . C 3 HOH A 89 361 108 HOH HOH . C 3 HOH A 90 362 109 HOH HOH . C 3 HOH A 91 363 110 HOH HOH . C 3 HOH A 92 364 111 HOH HOH . C 3 HOH A 93 365 112 HOH HOH . C 3 HOH A 94 366 113 HOH HOH . C 3 HOH A 95 367 115 HOH HOH . C 3 HOH A 96 368 116 HOH HOH . C 3 HOH A 97 369 117 HOH HOH . C 3 HOH A 98 370 118 HOH HOH . C 3 HOH A 99 371 119 HOH HOH . C 3 HOH A 100 372 121 HOH HOH . C 3 HOH A 101 373 122 HOH HOH . C 3 HOH A 102 374 123 HOH HOH . C 3 HOH A 103 375 124 HOH HOH . C 3 HOH A 104 376 125 HOH HOH . C 3 HOH A 105 377 126 HOH HOH . C 3 HOH A 106 378 127 HOH HOH . C 3 HOH A 107 379 129 HOH HOH . C 3 HOH A 108 380 130 HOH HOH . C 3 HOH A 109 381 132 HOH HOH . C 3 HOH A 110 382 133 HOH HOH . C 3 HOH A 111 383 134 HOH HOH . C 3 HOH A 112 384 136 HOH HOH . C 3 HOH A 113 385 139 HOH HOH . C 3 HOH A 114 386 140 HOH HOH . C 3 HOH A 115 387 142 HOH HOH . C 3 HOH A 116 388 144 HOH HOH . C 3 HOH A 117 389 145 HOH HOH . C 3 HOH A 118 390 146 HOH HOH . C 3 HOH A 119 391 148 HOH HOH . C 3 HOH A 120 392 149 HOH HOH . C 3 HOH A 121 393 150 HOH HOH . C 3 HOH A 122 394 152 HOH HOH . C 3 HOH A 123 395 155 HOH HOH . C 3 HOH A 124 396 157 HOH HOH . C 3 HOH A 125 397 158 HOH HOH . C 3 HOH A 126 398 159 HOH HOH . C 3 HOH A 127 399 162 HOH HOH . C 3 HOH A 128 400 164 HOH HOH . C 3 HOH A 129 401 165 HOH HOH . C 3 HOH A 130 402 166 HOH HOH . C 3 HOH A 131 403 167 HOH HOH . C 3 HOH A 132 404 172 HOH HOH . C 3 HOH A 133 405 173 HOH HOH . C 3 HOH A 134 406 175 HOH HOH . C 3 HOH A 135 407 176 HOH HOH . C 3 HOH A 136 408 178 HOH HOH . C 3 HOH A 137 409 181 HOH HOH . C 3 HOH A 138 410 182 HOH HOH . C 3 HOH A 139 411 183 HOH HOH . C 3 HOH A 140 412 184 HOH HOH . C 3 HOH A 141 413 186 HOH HOH . C 3 HOH A 142 414 188 HOH HOH . C 3 HOH A 143 415 190 HOH HOH . C 3 HOH A 144 416 191 HOH HOH . C 3 HOH A 145 417 192 HOH HOH . C 3 HOH A 146 418 194 HOH HOH . C 3 HOH A 147 419 195 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RIP . . . B 2 50.123 34.014 43.28 1 17.69 ? C1 RIP 272 A 1 HETATM 2 C C2 RIP . . . B 2 49.407 33.466 44.517 1 12.43 ? C2 RIP 272 A 1 HETATM 3 C C3 RIP . . . B 2 49.013 34.599 45.431 1 12.56 ? C3 RIP 272 A 1 HETATM 4 C C4 RIP . . . B 2 50.229 35.474 45.76 1 16.54 ? C4 RIP 272 A 1 HETATM 5 C C5 RIP . . . B 2 50.929 35.919 44.486 1 16.69 ? C5 RIP 272 A 1 HETATM 6 O O1 RIP . . . B 2 50.547 32.969 42.436 1 20.24 ? O1 RIP 272 A 1 HETATM 7 O O2 RIP . . . B 2 48.246 32.768 44.146 1 10.77 ? O2 RIP 272 A 1 HETATM 8 O O3 RIP . . . B 2 48.023 35.357 44.777 1 9.82 ? O3 RIP 272 A 1 HETATM 9 O O4 RIP . . . B 2 49.841 36.615 46.486 1 14.71 ? O4 RIP 272 A 1 HETATM 10 O O5 RIP . . . B 2 51.251 34.794 43.666 1 20.03 ? O5 RIP 272 A 1 HETATM 11 H H1 RIP . . . B 2 49.444 34.677 42.72 1 0 ? H1 RIP 272 A 1 HETATM 12 H H2 RIP . . . B 2 50.093 32.795 45.052 1 0 ? H2 RIP 272 A 1 HETATM 13 H H3 RIP . . . B 2 48.611 34.181 46.363 1 0 ? H3 RIP 272 A 1 HETATM 14 H H4 RIP . . . B 2 50.936 34.883 46.358 1 0 ? H4 RIP 272 A 1 HETATM 15 H H51 RIP . . . B 2 51.861 36.444 44.734 1 0 ? H51 RIP 272 A 1 HETATM 16 H H52 RIP . . . B 2 50.277 36.594 43.917 1 0 ? H52 RIP 272 A 1 HETATM 17 H HO1 RIP . . . B 2 49.801 32.406 42.223 1 0 ? HO1 RIP 272 A 1 HETATM 18 H HO2 RIP . . . B 2 48.466 32.117 43.475 1 0 ? HO2 RIP 272 A 1 HETATM 19 H HO3 RIP . . . B 2 48.398 35.756 43.988 1 0 ? HO3 RIP 272 A 1 HETATM 20 H HO4 RIP . . . B 2 50.566 37.242 46.506 1 0 ? HO4 RIP 272 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #