data_1DRM # _model_server_result.job_id CV-N5qSfXffBD89byPg-og _model_server_result.datetime_utc '2025-03-01 04:12:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1drm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":719}' # _entry.id 1DRM # _exptl.entry_id 1DRM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1DRM _cell.length_a 128.8 _cell.length_b 128.8 _cell.length_c 58.9 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DRM _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NE2 _struct_conn.ptnr1_label_comp_id HIS _struct_conn.ptnr1_label_seq_id 61 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id HIS _struct_conn.ptnr1_auth_seq_id 200 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 719 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.128 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 116 n n CHA C4D HEM doub 117 n n CHA HHA HEM sing 118 n n CHB C4A HEM sing 119 n n CHB C1B HEM doub 120 n n CHB HHB HEM sing 121 n n CHC C4B HEM sing 122 n n CHC C1C HEM doub 123 n n CHC HHC HEM sing 124 n n CHD C4C HEM doub 125 n n CHD C1D HEM sing 126 n n CHD HHD HEM sing 127 n n C1A C2A HEM doub 128 n y C1A NA HEM sing 129 n y C2A C3A HEM sing 130 n y C2A CAA HEM sing 131 n n C3A C4A HEM doub 132 n y C3A CMA HEM sing 133 n n C4A NA HEM sing 134 n y CMA HMA HEM sing 135 n n CMA HMAA HEM sing 136 n n CMA HMAB HEM sing 137 n n CAA CBA HEM sing 138 n n CAA HAA HEM sing 139 n n CAA HAAA HEM sing 140 n n CBA CGA HEM sing 141 n n CBA HBA HEM sing 142 n n CBA HBAA HEM sing 143 n n CGA O1A HEM doub 144 n n CGA O2A HEM sing 145 n n C1B C2B HEM sing 146 n n C1B NB HEM sing 147 n n C2B C3B HEM doub 148 n n C2B CMB HEM sing 149 n n C3B C4B HEM sing 150 n n C3B CAB HEM sing 151 n n C4B NB HEM doub 152 n n CMB HMB HEM sing 153 n n CMB HMBA HEM sing 154 n n CMB HMBB HEM sing 155 n n CAB CBB HEM doub 156 n n CAB HAB HEM sing 157 n n CBB HBB HEM sing 158 n n CBB HBBA HEM sing 159 n n C1C C2C HEM sing 160 n y C1C NC HEM sing 161 n y C2C C3C HEM doub 162 n y C2C CMC HEM sing 163 n n C3C C4C HEM sing 164 n y C3C CAC HEM sing 165 n n C4C NC HEM sing 166 n y CMC HMC HEM sing 167 n n CMC HMCA HEM sing 168 n n CMC HMCB HEM sing 169 n n CAC CBC HEM doub 170 n n CAC HAC HEM sing 171 n n CBC HBC HEM sing 172 n n CBC HBCA HEM sing 173 n n C1D C2D HEM sing 174 n n C1D ND HEM doub 175 n n C2D C3D HEM doub 176 n n C2D CMD HEM sing 177 n n C3D C4D HEM sing 178 n n C3D CAD HEM sing 179 n n C4D ND HEM sing 180 n n CMD HMD HEM sing 181 n n CMD HMDA HEM sing 182 n n CMD HMDB HEM sing 183 n n CAD CBD HEM sing 184 n n CAD HAD HEM sing 185 n n CAD HADA HEM sing 186 n n CBD CGD HEM sing 187 n n CBD HBD HEM sing 188 n n CBD HBDA HEM sing 189 n n CGD O1D HEM doub 190 n n CGD O2D HEM sing 191 n n O2A H2A HEM sing 192 n n O2D H2D HEM sing 193 n n FE NA HEM sing 194 n n FE NB HEM sing 195 n n FE NC HEM sing 196 n n FE ND HEM sing 197 n n # _atom_sites.entry_id 1DRM _atom_sites.fract_transf_matrix[1][1] 0.007764 _atom_sites.fract_transf_matrix[1][2] 0.004483 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008965 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016978 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 719 719 HEM HEM . C 3 HOH A 1 720 1 HOH HOH . C 3 HOH A 2 721 2 HOH HOH . C 3 HOH A 3 722 3 HOH HOH . C 3 HOH A 4 723 4 HOH HOH . C 3 HOH A 5 724 5 HOH HOH . C 3 HOH A 6 725 6 HOH HOH . C 3 HOH A 7 726 7 HOH HOH . C 3 HOH A 8 727 8 HOH HOH . C 3 HOH A 9 728 9 HOH HOH . C 3 HOH A 10 729 10 HOH HOH . C 3 HOH A 11 730 11 HOH HOH . C 3 HOH A 12 731 12 HOH HOH . C 3 HOH A 13 732 13 HOH HOH . C 3 HOH A 14 733 14 HOH HOH . C 3 HOH A 15 734 15 HOH HOH . C 3 HOH A 16 735 16 HOH HOH . C 3 HOH A 17 736 17 HOH HOH . C 3 HOH A 18 737 18 HOH HOH . C 3 HOH A 19 738 19 HOH HOH . C 3 HOH A 20 739 20 HOH HOH . C 3 HOH A 21 740 21 HOH HOH . C 3 HOH A 22 741 22 HOH HOH . C 3 HOH A 23 742 24 HOH HOH . C 3 HOH A 24 743 25 HOH HOH . C 3 HOH A 25 744 26 HOH HOH . C 3 HOH A 26 745 27 HOH HOH . C 3 HOH A 27 746 29 HOH HOH . C 3 HOH A 28 747 30 HOH HOH . C 3 HOH A 29 748 31 HOH HOH . C 3 HOH A 30 749 32 HOH HOH . C 3 HOH A 31 750 33 HOH HOH . C 3 HOH A 32 751 35 HOH HOH . C 3 HOH A 33 752 36 HOH HOH . C 3 HOH A 34 753 39 HOH HOH . C 3 HOH A 35 754 40 HOH HOH . C 3 HOH A 36 755 41 HOH HOH . C 3 HOH A 37 756 42 HOH HOH . C 3 HOH A 38 757 44 HOH HOH . C 3 HOH A 39 758 47 HOH HOH . C 3 HOH A 40 759 49 HOH HOH . C 3 HOH A 41 760 51 HOH HOH . C 3 HOH A 42 761 52 HOH HOH . C 3 HOH A 43 762 53 HOH HOH . C 3 HOH A 44 763 56 HOH HOH . C 3 HOH A 45 764 58 HOH HOH . C 3 HOH A 46 765 60 HOH HOH . C 3 HOH A 47 766 63 HOH HOH . C 3 HOH A 48 767 64 HOH HOH . C 3 HOH A 49 768 65 HOH HOH . C 3 HOH A 50 769 67 HOH HOH . C 3 HOH A 51 770 69 HOH HOH . C 3 HOH A 52 771 70 HOH HOH . C 3 HOH A 53 772 76 HOH HOH . C 3 HOH A 54 773 78 HOH HOH . C 3 HOH A 55 774 80 HOH HOH . C 3 HOH A 56 775 81 HOH HOH . C 3 HOH A 57 776 82 HOH HOH . C 3 HOH A 58 777 83 HOH HOH . C 3 HOH A 59 778 84 HOH HOH . C 3 HOH A 60 779 86 HOH HOH . C 3 HOH A 61 780 88 HOH HOH . C 3 HOH A 62 781 111 HOH HOH . C 3 HOH A 63 782 114 HOH HOH . C 3 HOH A 64 783 115 HOH HOH . C 3 HOH A 65 784 118 HOH HOH . C 3 HOH A 66 785 120 HOH HOH . C 3 HOH A 67 786 123 HOH HOH . C 3 HOH A 68 787 124 HOH HOH . C 3 HOH A 69 788 126 HOH HOH . C 3 HOH A 70 789 130 HOH HOH . C 3 HOH A 71 790 131 HOH HOH . C 3 HOH A 72 791 132 HOH HOH . C 3 HOH A 73 792 134 HOH HOH . C 3 HOH A 74 793 135 HOH HOH . C 3 HOH A 75 794 136 HOH HOH . C 3 HOH A 76 795 137 HOH HOH . C 3 HOH A 77 796 139 HOH HOH . C 3 HOH A 78 797 141 HOH HOH . C 3 HOH A 79 798 142 HOH HOH . C 3 HOH A 80 799 143 HOH HOH . C 3 HOH A 81 800 144 HOH HOH . C 3 HOH A 82 801 145 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 45.678 55.008 33.291 1 19.11 ? CHA HEM 719 A 1 HETATM 2 C CHB HEM . . . B 2 50.331 55.001 31.342 1 16.99 ? CHB HEM 719 A 1 HETATM 3 C CHC HEM . . . B 2 51.878 57.231 35.204 1 10.8 ? CHC HEM 719 A 1 HETATM 4 C CHD HEM . . . B 2 47.299 57.898 36.9 1 16.99 ? CHD HEM 719 A 1 HETATM 5 C C1A HEM . . . B 2 46.804 54.752 32.449 1 21.02 ? C1A HEM 719 A 1 HETATM 6 C C2A HEM . . . B 2 46.826 53.873 31.332 1 22.59 ? C2A HEM 719 A 1 HETATM 7 C C3A HEM . . . B 2 48.123 53.901 30.81 1 19.71 ? C3A HEM 719 A 1 HETATM 8 C C4A HEM . . . B 2 48.922 54.758 31.573 1 18.53 ? C4A HEM 719 A 1 HETATM 9 C CMA HEM . . . B 2 48.711 53.084 29.59 1 19.32 ? CMA HEM 719 A 1 HETATM 10 C CAA HEM . . . B 2 45.64 52.916 31.042 1 25.81 ? CAA HEM 719 A 1 HETATM 11 C CBA HEM . . . B 2 45.424 52.798 29.694 1 36.62 ? CBA HEM 719 A 1 HETATM 12 C CGA HEM . . . B 2 44.573 51.631 29.422 1 42.04 ? CGA HEM 719 A 1 HETATM 13 O O1A HEM . . . B 2 43.542 51.954 28.733 1 42.6 ? O1A HEM 719 A 1 HETATM 14 O O2A HEM . . . B 2 44.916 50.459 29.83 1 44.33 ? O2A HEM 719 A 1 HETATM 15 C C1B HEM . . . B 2 51.097 55.622 32.187 1 15.97 ? C1B HEM 719 A 1 HETATM 16 C C2B HEM . . . B 2 52.468 55.815 31.963 1 16.84 ? C2B HEM 719 A 1 HETATM 17 C C3B HEM . . . B 2 52.971 56.416 33.017 1 14.16 ? C3B HEM 719 A 1 HETATM 18 C C4B HEM . . . B 2 51.838 56.742 33.981 1 13.82 ? C4B HEM 719 A 1 HETATM 19 C CMB HEM . . . B 2 53.265 55.367 30.736 1 17.77 ? CMB HEM 719 A 1 HETATM 20 C CAB HEM . . . B 2 54.458 56.728 33.074 1 15.69 ? CAB HEM 719 A 1 HETATM 21 C CBB HEM . . . B 2 54.797 57.829 34.121 1 15.1 ? CBB HEM 719 A 1 HETATM 22 C C1C HEM . . . B 2 50.752 57.528 35.959 1 15.25 ? C1C HEM 719 A 1 HETATM 23 C C2C HEM . . . B 2 50.819 58.118 37.297 1 15.34 ? C2C HEM 719 A 1 HETATM 24 C C3C HEM . . . B 2 49.61 58.249 37.732 1 16.76 ? C3C HEM 719 A 1 HETATM 25 C C4C HEM . . . B 2 48.743 57.799 36.74 1 18.02 ? C4C HEM 719 A 1 HETATM 26 C CMC HEM . . . B 2 52.186 58.488 38.057 1 19.84 ? CMC HEM 719 A 1 HETATM 27 C CAC HEM . . . B 2 48.981 58.607 39.148 1 15.39 ? CAC HEM 719 A 1 HETATM 28 C CBC HEM . . . B 2 49.918 59.463 39.915 1 15.41 ? CBC HEM 719 A 1 HETATM 29 C C1D HEM . . . B 2 46.538 57.237 36.117 1 18.41 ? C1D HEM 719 A 1 HETATM 30 C C2D HEM . . . B 2 45.07 57.032 36.301 1 17.18 ? C2D HEM 719 A 1 HETATM 31 C C3D HEM . . . B 2 44.625 56.329 35.282 1 18.05 ? C3D HEM 719 A 1 HETATM 32 C C4D HEM . . . B 2 45.769 55.956 34.453 1 21.8 ? C4D HEM 719 A 1 HETATM 33 C CMD HEM . . . B 2 44.232 57.565 37.376 1 17.56 ? CMD HEM 719 A 1 HETATM 34 C CAD HEM . . . B 2 43.164 55.853 34.802 1 22.77 ? CAD HEM 719 A 1 HETATM 35 C CBD HEM . . . B 2 42.825 54.415 35.34 1 26.65 ? CBD HEM 719 A 1 HETATM 36 C CGD HEM . . . B 2 42.189 53.115 35.033 1 25.46 ? CGD HEM 719 A 1 HETATM 37 O O1D HEM . . . B 2 42.549 52.309 35.885 1 27.03 ? O1D HEM 719 A 1 HETATM 38 O O2D HEM . . . B 2 42.135 52.839 33.841 1 27.9 ? O2D HEM 719 A 1 HETATM 39 N NA HEM . . . B 2 48.188 55.293 32.58 1 16.93 ? NA HEM 719 A 1 HETATM 40 N NB HEM . . . B 2 50.624 56.295 33.435 1 13.04 ? NB HEM 719 A 1 HETATM 41 N NC HEM . . . B 2 49.436 57.336 35.605 1 16.58 ? NC HEM 719 A 1 HETATM 42 N ND HEM . . . B 2 47.059 56.564 34.906 1 16.11 ? ND HEM 719 A 1 HETATM 43 FE FE HEM . . . B 2 48.766 56.499 34.031 1 22.43 ? FE HEM 719 A 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 43 #