data_1DRT # _model_server_result.job_id e42-lmWNKswHEv49XeqDwQ _model_server_result.datetime_utc '2024-12-02 07:20:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1drt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":326}' # _entry.id 1DRT # _exptl.entry_id 1DRT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 146.098 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-OXOGLUTARIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1DRT _cell.length_a 65.48 _cell.length_b 68.64 _cell.length_c 69.5 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DRT _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 144 A HIS 144 1_555 C FE FE2 . A FE2 325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc2 A OE1 GLU 146 A GLU 146 1_555 C FE FE2 . A FE2 325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc3 A NE2 HIS 279 A HIS 279 1_555 C FE FE2 . A FE2 325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc4 C FE FE2 . A FE2 325 1_555 D O1 AKG . A AKG 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.801 ? metalc ? metalc5 C FE FE2 . A FE2 325 1_555 D O5 AKG . A AKG 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? # _chem_comp.formula 'C5 H6 O5' _chem_comp.formula_weight 146.098 _chem_comp.id AKG _chem_comp.mon_nstd_flag . _chem_comp.name '2-OXOGLUTARIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 AKG doub 1 n n C1 O2 AKG sing 2 n n C1 C2 AKG sing 3 n n O2 HO2 AKG sing 4 n n C2 O5 AKG doub 5 n n C2 C3 AKG sing 6 n n C3 C4 AKG sing 7 n n C3 H31 AKG sing 8 n n C3 H32 AKG sing 9 n n C4 C5 AKG sing 10 n n C4 H41 AKG sing 11 n n C4 H42 AKG sing 12 n n C5 O3 AKG doub 13 n n C5 O4 AKG sing 14 n n O4 HO4 AKG sing 15 n n # _atom_sites.entry_id 1DRT _atom_sites.fract_transf_matrix[1][1] 0.015272 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014569 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014388 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PCV A 1 327 327 PCV PCM . C 3 FE2 A 1 325 325 FE2 FE . D 4 AKG A 1 326 326 AKG AKG . E 5 HOH A 1 340 340 HOH WAT . E 5 HOH A 2 341 341 HOH WAT . E 5 HOH A 3 342 342 HOH WAT . E 5 HOH A 4 343 343 HOH WAT . E 5 HOH A 5 345 345 HOH WAT . E 5 HOH A 6 346 346 HOH WAT . E 5 HOH A 7 347 347 HOH WAT . E 5 HOH A 8 348 348 HOH WAT . E 5 HOH A 9 349 349 HOH WAT . E 5 HOH A 10 350 350 HOH WAT . E 5 HOH A 11 351 351 HOH WAT . E 5 HOH A 12 352 352 HOH WAT . E 5 HOH A 13 353 353 HOH WAT . E 5 HOH A 14 354 354 HOH WAT . E 5 HOH A 15 355 355 HOH WAT . E 5 HOH A 16 356 356 HOH WAT . E 5 HOH A 17 357 357 HOH WAT . E 5 HOH A 18 358 358 HOH WAT . E 5 HOH A 19 359 359 HOH WAT . E 5 HOH A 20 360 360 HOH WAT . E 5 HOH A 21 361 361 HOH WAT . E 5 HOH A 22 362 362 HOH WAT . E 5 HOH A 23 363 363 HOH WAT . E 5 HOH A 24 364 364 HOH WAT . E 5 HOH A 25 365 365 HOH WAT . E 5 HOH A 26 366 366 HOH WAT . E 5 HOH A 27 367 367 HOH WAT . E 5 HOH A 28 368 368 HOH WAT . E 5 HOH A 29 369 369 HOH WAT . E 5 HOH A 30 370 370 HOH WAT . E 5 HOH A 31 371 371 HOH WAT . E 5 HOH A 32 372 372 HOH WAT . E 5 HOH A 33 373 373 HOH WAT . E 5 HOH A 34 374 374 HOH WAT . E 5 HOH A 35 375 375 HOH WAT . E 5 HOH A 36 376 376 HOH WAT . E 5 HOH A 37 377 377 HOH WAT . E 5 HOH A 38 378 378 HOH WAT . E 5 HOH A 39 379 379 HOH WAT . E 5 HOH A 40 380 380 HOH WAT . E 5 HOH A 41 381 381 HOH WAT . E 5 HOH A 42 382 382 HOH WAT . E 5 HOH A 43 383 383 HOH WAT . E 5 HOH A 44 384 384 HOH WAT . E 5 HOH A 45 385 385 HOH WAT . E 5 HOH A 46 387 387 HOH WAT . E 5 HOH A 47 388 388 HOH WAT . E 5 HOH A 48 389 389 HOH WAT . E 5 HOH A 49 390 390 HOH WAT . E 5 HOH A 50 391 391 HOH WAT . E 5 HOH A 51 392 392 HOH WAT . E 5 HOH A 52 393 393 HOH WAT . E 5 HOH A 53 394 394 HOH WAT . E 5 HOH A 54 395 395 HOH WAT . E 5 HOH A 55 396 396 HOH WAT . E 5 HOH A 56 397 397 HOH WAT . E 5 HOH A 57 398 398 HOH WAT . E 5 HOH A 58 399 399 HOH WAT . E 5 HOH A 59 400 400 HOH WAT . E 5 HOH A 60 401 401 HOH WAT . E 5 HOH A 61 402 402 HOH WAT . E 5 HOH A 62 403 403 HOH WAT . E 5 HOH A 63 404 404 HOH WAT . E 5 HOH A 64 405 405 HOH WAT . E 5 HOH A 65 406 406 HOH WAT . E 5 HOH A 66 407 407 HOH WAT . E 5 HOH A 67 408 408 HOH WAT . E 5 HOH A 68 409 409 HOH WAT . E 5 HOH A 69 410 410 HOH WAT . E 5 HOH A 70 411 411 HOH WAT . E 5 HOH A 71 412 412 HOH WAT . E 5 HOH A 72 413 413 HOH WAT . E 5 HOH A 73 414 414 HOH WAT . E 5 HOH A 74 415 415 HOH WAT . E 5 HOH A 75 416 416 HOH WAT . E 5 HOH A 76 417 417 HOH WAT . E 5 HOH A 77 418 418 HOH WAT . E 5 HOH A 78 419 419 HOH WAT . E 5 HOH A 79 420 420 HOH WAT . E 5 HOH A 80 421 421 HOH WAT . E 5 HOH A 81 422 422 HOH WAT . E 5 HOH A 82 423 423 HOH WAT . E 5 HOH A 83 424 424 HOH WAT . E 5 HOH A 84 425 425 HOH WAT . E 5 HOH A 85 426 426 HOH WAT . E 5 HOH A 86 427 427 HOH WAT . E 5 HOH A 87 428 428 HOH WAT . E 5 HOH A 88 429 429 HOH WAT . E 5 HOH A 89 430 430 HOH WAT . E 5 HOH A 90 431 431 HOH WAT . E 5 HOH A 91 432 432 HOH WAT . E 5 HOH A 92 433 433 HOH WAT . E 5 HOH A 93 434 434 HOH WAT . E 5 HOH A 94 435 435 HOH WAT . E 5 HOH A 95 436 436 HOH WAT . E 5 HOH A 96 437 437 HOH WAT . E 5 HOH A 97 438 438 HOH WAT . E 5 HOH A 98 439 439 HOH WAT . E 5 HOH A 99 440 440 HOH WAT . E 5 HOH A 100 441 441 HOH WAT . E 5 HOH A 101 442 442 HOH WAT . E 5 HOH A 102 443 443 HOH WAT . E 5 HOH A 103 444 444 HOH WAT . E 5 HOH A 104 445 445 HOH WAT . E 5 HOH A 105 446 446 HOH WAT . E 5 HOH A 106 447 447 HOH WAT . E 5 HOH A 107 448 448 HOH WAT . E 5 HOH A 108 449 449 HOH WAT . E 5 HOH A 109 450 450 HOH WAT . E 5 HOH A 110 451 451 HOH WAT . E 5 HOH A 111 452 452 HOH WAT . E 5 HOH A 112 453 453 HOH WAT . E 5 HOH A 113 454 454 HOH WAT . E 5 HOH A 114 455 455 HOH WAT . E 5 HOH A 115 456 456 HOH WAT . E 5 HOH A 116 457 457 HOH WAT . E 5 HOH A 117 458 458 HOH WAT . E 5 HOH A 118 459 459 HOH WAT . E 5 HOH A 119 460 460 HOH WAT . E 5 HOH A 120 461 461 HOH WAT . E 5 HOH A 121 462 462 HOH WAT . E 5 HOH A 122 463 463 HOH WAT . E 5 HOH A 123 464 464 HOH WAT . E 5 HOH A 124 465 465 HOH WAT . E 5 HOH A 125 466 466 HOH WAT . E 5 HOH A 126 467 467 HOH WAT . E 5 HOH A 127 468 468 HOH WAT . E 5 HOH A 128 469 469 HOH WAT . E 5 HOH A 129 470 470 HOH WAT . E 5 HOH A 130 471 471 HOH WAT . E 5 HOH A 131 472 472 HOH WAT . E 5 HOH A 132 473 473 HOH WAT . E 5 HOH A 133 474 474 HOH WAT . E 5 HOH A 134 475 475 HOH WAT . E 5 HOH A 135 476 476 HOH WAT . E 5 HOH A 136 477 477 HOH WAT . E 5 HOH A 137 478 478 HOH WAT . E 5 HOH A 138 479 479 HOH WAT . E 5 HOH A 139 480 480 HOH WAT . E 5 HOH A 140 481 481 HOH WAT . E 5 HOH A 141 482 482 HOH WAT . E 5 HOH A 142 483 483 HOH WAT . E 5 HOH A 143 484 484 HOH WAT . E 5 HOH A 144 485 485 HOH WAT . E 5 HOH A 145 486 486 HOH WAT . E 5 HOH A 146 487 487 HOH WAT . E 5 HOH A 147 488 488 HOH WAT . E 5 HOH A 148 489 489 HOH WAT . E 5 HOH A 149 490 490 HOH WAT . E 5 HOH A 150 491 491 HOH WAT . E 5 HOH A 151 492 492 HOH WAT . E 5 HOH A 152 493 493 HOH WAT . E 5 HOH A 153 494 494 HOH WAT . E 5 HOH A 154 495 495 HOH WAT . E 5 HOH A 155 496 496 HOH WAT . E 5 HOH A 156 497 497 HOH WAT . E 5 HOH A 157 498 498 HOH WAT . E 5 HOH A 158 499 499 HOH WAT . E 5 HOH A 159 500 500 HOH WAT . E 5 HOH A 160 501 501 HOH WAT . E 5 HOH A 161 502 502 HOH WAT . E 5 HOH A 162 503 503 HOH WAT . E 5 HOH A 163 504 504 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 AKG . . . D 4 -3.453 4.791 5.725 1 26.81 ? C1 AKG 326 A 1 HETATM 2 O O1 AKG . . . D 4 -2.593 3.902 5.673 1 26.83 ? O1 AKG 326 A 1 HETATM 3 O O2 AKG . . . D 4 -3.679 5.514 6.844 1 26.66 ? O2 AKG 326 A 1 HETATM 4 C C2 AKG . . . D 4 -4.243 5.063 4.52 1 23.78 ? C2 AKG 326 A 1 HETATM 5 O O5 AKG . . . D 4 -3.874 4.583 3.455 1 22.35 ? O5 AKG 326 A 1 HETATM 6 C C3 AKG . . . D 4 -5.475 5.921 4.593 1 23.67 ? C3 AKG 326 A 1 HETATM 7 C C4 AKG . . . D 4 -6.738 5.086 4.267 1 21.34 ? C4 AKG 326 A 1 HETATM 8 C C5 AKG . . . D 4 -7.986 5.86 4.595 1 20.12 ? C5 AKG 326 A 1 HETATM 9 O O3 AKG . . . D 4 -7.982 7.076 4.717 1 17.59 ? O3 AKG 326 A 1 HETATM 10 O O4 AKG . . . D 4 -9.086 5.13 4.727 1 19.98 ? O4 AKG 326 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 10 #