data_1DRU # _model_server_result.job_id aHLV7o9AKsHh-Th0N9tyzg _model_server_result.datetime_utc '2025-03-04 21:20:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1dru # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 1DRU # _exptl.entry_id 1DRU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1DRU _cell.length_a 81.2 _cell.length_b 84.5 _cell.length_c 91.9 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DRU _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 84.5 0 3 'crystal symmetry operation' 3_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 0 0 91.9 4 'crystal symmetry operation' 4_566 x,-y+1,-z+1 1 0 0 0 -1 0 0 0 -1 0 84.5 91.9 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 237 n n PA O2A NAD sing 238 n n PA O5B NAD sing 239 n n PA O3 NAD sing 240 n n O2A HOA2 NAD sing 241 n n O5B C5B NAD sing 242 n n C5B C4B NAD sing 243 n n C5B H51A NAD sing 244 n n C5B H52A NAD sing 245 n n C4B O4B NAD sing 246 n n C4B C3B NAD sing 247 n n C4B H4B NAD sing 248 n n O4B C1B NAD sing 249 n n C3B O3B NAD sing 250 n n C3B C2B NAD sing 251 n n C3B H3B NAD sing 252 n n O3B HO3A NAD sing 253 n n C2B O2B NAD sing 254 n n C2B C1B NAD sing 255 n n C2B H2B NAD sing 256 n n O2B HO2A NAD sing 257 n n C1B N9A NAD sing 258 n n C1B H1B NAD sing 259 n n N9A C8A NAD sing 260 n y N9A C4A NAD sing 261 n y C8A N7A NAD doub 262 n y C8A H8A NAD sing 263 n n N7A C5A NAD sing 264 n y C5A C6A NAD sing 265 n y C5A C4A NAD doub 266 n y C6A N6A NAD sing 267 n n C6A N1A NAD doub 268 n y N6A H61A NAD sing 269 n n N6A H62A NAD sing 270 n n N1A C2A NAD sing 271 n y C2A N3A NAD doub 272 n y C2A H2A NAD sing 273 n n N3A C4A NAD sing 274 n y O3 PN NAD sing 275 n n PN O1N NAD doub 276 n n PN O2N NAD sing 277 n n PN O5D NAD sing 278 n n O5D C5D NAD sing 279 n n C5D C4D NAD sing 280 n n C5D H51N NAD sing 281 n n C5D H52N NAD sing 282 n n C4D O4D NAD sing 283 n n C4D C3D NAD sing 284 n n C4D H4D NAD sing 285 n n O4D C1D NAD sing 286 n n C3D O3D NAD sing 287 n n C3D C2D NAD sing 288 n n C3D H3D NAD sing 289 n n O3D HO3N NAD sing 290 n n C2D O2D NAD sing 291 n n C2D C1D NAD sing 292 n n C2D H2D NAD sing 293 n n O2D HO2N NAD sing 294 n n C1D N1N NAD sing 295 n n C1D H1D NAD sing 296 n n N1N C2N NAD sing 297 n y N1N C6N NAD doub 298 n y C2N C3N NAD doub 299 n y C2N H2N NAD sing 300 n n C3N C7N NAD sing 301 n n C3N C4N NAD sing 302 n y C7N O7N NAD doub 303 n n C7N N7N NAD sing 304 n n N7N H71N NAD sing 305 n n N7N H72N NAD sing 306 n n C4N C5N NAD doub 307 n y C4N H4N NAD sing 308 n n C5N C6N NAD sing 309 n y C5N H5N NAD sing 310 n n C6N H6N NAD sing 311 n n # _atom_sites.entry_id 1DRU _atom_sites.fract_transf_matrix[1][1] 0.012315 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011834 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010881 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAD A 1 301 301 NAD NAH . C 3 HOH A 1 302 302 HOH HOH . C 3 HOH A 2 303 303 HOH HOH . C 3 HOH A 3 401 401 HOH HOH . C 3 HOH A 4 402 402 HOH HOH . C 3 HOH A 5 403 403 HOH HOH . C 3 HOH A 6 404 404 HOH HOH . C 3 HOH A 7 406 406 HOH HOH . C 3 HOH A 8 407 407 HOH HOH . C 3 HOH A 9 408 408 HOH HOH . C 3 HOH A 10 409 409 HOH HOH . C 3 HOH A 11 410 410 HOH HOH . C 3 HOH A 12 411 411 HOH HOH . C 3 HOH A 13 412 412 HOH HOH . C 3 HOH A 14 413 413 HOH HOH . C 3 HOH A 15 414 414 HOH HOH . C 3 HOH A 16 415 415 HOH HOH . C 3 HOH A 17 416 416 HOH HOH . C 3 HOH A 18 417 417 HOH HOH . C 3 HOH A 19 418 418 HOH HOH . C 3 HOH A 20 419 419 HOH HOH . C 3 HOH A 21 420 420 HOH HOH . C 3 HOH A 22 421 421 HOH HOH . C 3 HOH A 23 422 422 HOH HOH . C 3 HOH A 24 423 423 HOH HOH . C 3 HOH A 25 424 424 HOH HOH . C 3 HOH A 26 425 425 HOH HOH . C 3 HOH A 27 426 426 HOH HOH . C 3 HOH A 28 427 427 HOH HOH . C 3 HOH A 29 428 428 HOH HOH . C 3 HOH A 30 429 429 HOH HOH . C 3 HOH A 31 430 430 HOH HOH . C 3 HOH A 32 432 432 HOH HOH . C 3 HOH A 33 433 433 HOH HOH . C 3 HOH A 34 434 434 HOH HOH . C 3 HOH A 35 435 435 HOH HOH . C 3 HOH A 36 436 436 HOH HOH . C 3 HOH A 37 437 437 HOH HOH . C 3 HOH A 38 438 438 HOH HOH . C 3 HOH A 39 439 439 HOH HOH . C 3 HOH A 40 440 440 HOH HOH . C 3 HOH A 41 441 441 HOH HOH . C 3 HOH A 42 442 442 HOH HOH . C 3 HOH A 43 444 444 HOH HOH . C 3 HOH A 44 445 445 HOH HOH . C 3 HOH A 45 446 446 HOH HOH . C 3 HOH A 46 447 447 HOH HOH . C 3 HOH A 47 448 448 HOH HOH . C 3 HOH A 48 449 449 HOH HOH . C 3 HOH A 49 450 450 HOH HOH . C 3 HOH A 50 451 451 HOH HOH . C 3 HOH A 51 453 453 HOH HOH . C 3 HOH A 52 454 454 HOH HOH . C 3 HOH A 53 455 455 HOH HOH . C 3 HOH A 54 456 456 HOH HOH . C 3 HOH A 55 457 457 HOH HOH . C 3 HOH A 56 458 458 HOH HOH . C 3 HOH A 57 459 459 HOH HOH . C 3 HOH A 58 460 460 HOH HOH . C 3 HOH A 59 462 462 HOH HOH . C 3 HOH A 60 464 464 HOH HOH . C 3 HOH A 61 467 467 HOH HOH . C 3 HOH A 62 468 468 HOH HOH . C 3 HOH A 63 472 472 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . B 2 6.478 29.05 18.152 0.8 45.87 ? PA NAD 301 A 1 HETATM 2 O O1A NAD . . . B 2 5.923 30.316 17.605 0.8 49.67 ? O1A NAD 301 A 1 HETATM 3 O O2A NAD . . . B 2 5.725 27.814 17.819 0.8 46.12 ? O2A NAD 301 A 1 HETATM 4 O O5B NAD . . . B 2 7.983 28.896 17.588 0.8 41.27 ? O5B NAD 301 A 1 HETATM 5 C C5B NAD . . . B 2 8.272 28.063 16.492 0.8 39.61 ? C5B NAD 301 A 1 HETATM 6 C C4B NAD . . . B 2 9.14 28.81 15.52 0.8 40.92 ? C4B NAD 301 A 1 HETATM 7 O O4B NAD . . . B 2 10.33 28.026 15.246 0.8 44.46 ? O4B NAD 301 A 1 HETATM 8 C C3B NAD . . . B 2 8.499 28.916 14.153 0.8 43.88 ? C3B NAD 301 A 1 HETATM 9 O O3B NAD . . . B 2 9.059 30.087 13.554 0.8 49.37 ? O3B NAD 301 A 1 HETATM 10 C C2B NAD . . . B 2 8.939 27.625 13.439 0.8 40.87 ? C2B NAD 301 A 1 HETATM 11 O O2B NAD . . . B 2 9.04 27.658 12.018 0.8 37.43 ? O2B NAD 301 A 1 HETATM 12 C C1B NAD . . . B 2 10.385 27.682 13.858 0.8 42.43 ? C1B NAD 301 A 1 HETATM 13 N N9A NAD . . . B 2 10.947 26.351 13.586 0.8 43.89 ? N9A NAD 301 A 1 HETATM 14 C C8A NAD . . . B 2 10.344 25.217 14.077 0.8 43.57 ? C8A NAD 301 A 1 HETATM 15 N N7A NAD . . . B 2 11.008 24.128 13.784 0.8 43.15 ? N7A NAD 301 A 1 HETATM 16 C C5A NAD . . . B 2 12.048 24.539 12.969 0.8 44.93 ? C5A NAD 301 A 1 HETATM 17 C C6A NAD . . . B 2 13.047 23.819 12.247 0.8 54.53 ? C6A NAD 301 A 1 HETATM 18 N N6A NAD . . . B 2 13.253 22.476 12.308 0.8 56.58 ? N6A NAD 301 A 1 HETATM 19 N N1A NAD . . . B 2 13.93 24.554 11.513 0.8 57.71 ? N1A NAD 301 A 1 HETATM 20 C C2A NAD . . . B 2 13.728 25.885 11.433 0.8 54.85 ? C2A NAD 301 A 1 HETATM 21 N N3A NAD . . . B 2 12.763 26.663 11.97 0.8 48.06 ? N3A NAD 301 A 1 HETATM 22 C C4A NAD . . . B 2 11.988 25.915 12.788 0.8 44.22 ? C4A NAD 301 A 1 HETATM 23 O O3 NAD . . . B 2 6.645 29.345 19.611 0.8 43.14 ? O3 NAD 301 A 1 HETATM 24 P PN NAD . . . B 2 7.626 30.287 20.172 0.8 36.18 ? PN NAD 301 A 1 HETATM 25 O O1N NAD . . . B 2 6.606 30.591 21.226 0.8 33.96 ? O1N NAD 301 A 1 HETATM 26 O O2N NAD . . . B 2 8.192 31.288 19.222 0.8 35.82 ? O2N NAD 301 A 1 HETATM 27 O O5D NAD . . . B 2 8.858 29.471 20.823 0.8 25.74 ? O5D NAD 301 A 1 HETATM 28 C C5D NAD . . . B 2 10.196 29.676 20.401 0.8 28.18 ? C5D NAD 301 A 1 HETATM 29 C C4D NAD . . . B 2 11.288 28.993 21.219 0.8 33.9 ? C4D NAD 301 A 1 HETATM 30 O O4D NAD . . . B 2 11.867 29.889 22.203 0.8 35.87 ? O4D NAD 301 A 1 HETATM 31 C C3D NAD . . . B 2 10.946 27.718 22.009 0.8 39.12 ? C3D NAD 301 A 1 HETATM 32 O O3D NAD . . . B 2 11.993 26.711 22.062 0.8 40.98 ? O3D NAD 301 A 1 HETATM 33 C C2D NAD . . . B 2 10.711 28.227 23.427 0.8 37.91 ? C2D NAD 301 A 1 HETATM 34 O O2D NAD . . . B 2 10.939 27.115 24.291 0.8 38.98 ? O2D NAD 301 A 1 HETATM 35 C C1D NAD . . . B 2 11.762 29.337 23.523 0.8 33.58 ? C1D NAD 301 A 1 HETATM 36 N N1N NAD . . . B 2 11.55 30.411 24.525 0.8 30.18 ? N1N NAD 301 A 1 HETATM 37 C C2N NAD . . . B 2 12.584 30.853 25.254 0.8 32.41 ? C2N NAD 301 A 1 HETATM 38 C C3N NAD . . . B 2 12.684 31.931 26.042 0.8 30.64 ? C3N NAD 301 A 1 HETATM 39 C C7N NAD . . . B 2 13.794 32.235 26.81 0.8 28.07 ? C7N NAD 301 A 1 HETATM 40 O O7N NAD . . . B 2 13.716 33.303 27.696 0.8 28.4 ? O7N NAD 301 A 1 HETATM 41 N N7N NAD . . . B 2 14.723 31.293 26.766 0.8 24.03 ? N7N NAD 301 A 1 HETATM 42 C C4N NAD . . . B 2 11.516 32.551 26.185 0.8 29.07 ? C4N NAD 301 A 1 HETATM 43 C C5N NAD . . . B 2 10.371 32.191 25.526 0.8 29.51 ? C5N NAD 301 A 1 HETATM 44 C C6N NAD . . . B 2 10.384 31.03 24.716 0.8 27.59 ? C6N NAD 301 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 44 #