data_1DRV # _model_server_result.job_id qKaYQkzbGncHZZR_dqBlRw _model_server_result.datetime_utc '2024-10-18 16:29:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1drv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 1DRV # _exptl.entry_id 1DRV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 662.437 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-ACETYLPYRIDINE ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1DRV _cell.length_a 81.6 _cell.length_b 84.6 _cell.length_c 91.9 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DRV _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 84.6 0 3 'crystal symmetry operation' 3_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 0 0 91.9 4 'crystal symmetry operation' 4_566 x,-y+1,-z+1 1 0 0 0 -1 0 0 0 -1 0 84.6 91.9 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C22 H28 N6 O14 P2' _chem_comp.formula_weight 662.437 _chem_comp.id A3D _chem_comp.mon_nstd_flag . _chem_comp.name '3-ACETYLPYRIDINE ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A A3D doub 1 n n PA O2A A3D sing 2 n n PA O5B A3D sing 3 n n PA O3 A3D sing 4 n n O2A HOA2 A3D sing 5 n n O5B C5B A3D sing 6 n n C5B C4B A3D sing 7 n n C5B H51A A3D sing 8 n n C5B H52A A3D sing 9 n n C4B O4B A3D sing 10 n n C4B C3B A3D sing 11 n n C4B H4B A3D sing 12 n n O4B C1B A3D sing 13 n n C3B O3B A3D sing 14 n n C3B C2B A3D sing 15 n n C3B H3B A3D sing 16 n n O3B HO3A A3D sing 17 n n C2B O2B A3D sing 18 n n C2B C1B A3D sing 19 n n C2B H2B A3D sing 20 n n O2B HO2A A3D sing 21 n n C1B N9A A3D sing 22 n n C1B H1B A3D sing 23 n n N9A C8A A3D sing 24 n y N9A C4A A3D sing 25 n y C8A N7A A3D doub 26 n y C8A H8A A3D sing 27 n n N7A C5A A3D sing 28 n y C5A C6A A3D doub 29 n y C5A C4A A3D sing 30 n y C6A N6A A3D sing 31 n n C6A N1A A3D sing 32 n y N6A H61A A3D sing 33 n n N6A H62A A3D sing 34 n n N1A C2A A3D doub 35 n y C2A N3A A3D sing 36 n y C2A H2A A3D sing 37 n n N3A C4A A3D doub 38 n y O3 PN A3D sing 39 n n PN O1N A3D doub 40 n n PN O2N A3D sing 41 n n PN O5D A3D sing 42 n n O5D C5D A3D sing 43 n n C5D C4D A3D sing 44 n n C5D H51N A3D sing 45 n n C5D H52N A3D sing 46 n n C4D O4D A3D sing 47 n n C4D C3D A3D sing 48 n n C4D H4D A3D sing 49 n n O4D C1D A3D sing 50 n n C3D O3D A3D sing 51 n n C3D C2D A3D sing 52 n n C3D H3D A3D sing 53 n n O3D HO3N A3D sing 54 n n C2D O2D A3D sing 55 n n C2D C1D A3D sing 56 n n C2D H2D A3D sing 57 n n O2D HO2N A3D sing 58 n n C1D N1N A3D sing 59 n n C1D H1D A3D sing 60 n n N1N C2N A3D doub 61 n y N1N C6N A3D sing 62 n y C2N C3N A3D sing 63 n y C2N H2N A3D sing 64 n n C3N C7N A3D sing 65 n n C3N C4N A3D doub 66 n y C7N O7N A3D doub 67 n n C7N C8N A3D sing 68 n n C8N H81N A3D sing 69 n n C8N H82N A3D sing 70 n n C8N H83N A3D sing 71 n n C4N C5N A3D sing 72 n y C4N H4N A3D sing 73 n n C5N C6N A3D doub 74 n y C5N H5N A3D sing 75 n n C6N H6N A3D sing 76 n n # _atom_sites.entry_id 1DRV _atom_sites.fract_transf_matrix[1][1] 0.012255 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01182 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010881 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A3D A 1 301 301 A3D NAC . C 3 HOH A 1 401 401 HOH HOH . C 3 HOH A 2 402 402 HOH HOH . C 3 HOH A 3 403 403 HOH HOH . C 3 HOH A 4 404 404 HOH HOH . C 3 HOH A 5 405 405 HOH HOH . C 3 HOH A 6 406 406 HOH HOH . C 3 HOH A 7 407 407 HOH HOH . C 3 HOH A 8 408 408 HOH HOH . C 3 HOH A 9 409 409 HOH HOH . C 3 HOH A 10 410 410 HOH HOH . C 3 HOH A 11 411 411 HOH HOH . C 3 HOH A 12 412 412 HOH HOH . C 3 HOH A 13 413 413 HOH HOH . C 3 HOH A 14 414 414 HOH HOH . C 3 HOH A 15 415 415 HOH HOH . C 3 HOH A 16 416 416 HOH HOH . C 3 HOH A 17 417 417 HOH HOH . C 3 HOH A 18 418 418 HOH HOH . C 3 HOH A 19 419 419 HOH HOH . C 3 HOH A 20 420 420 HOH HOH . C 3 HOH A 21 421 421 HOH HOH . C 3 HOH A 22 422 422 HOH HOH . C 3 HOH A 23 423 423 HOH HOH . C 3 HOH A 24 424 424 HOH HOH . C 3 HOH A 25 425 425 HOH HOH . C 3 HOH A 26 426 426 HOH HOH . C 3 HOH A 27 427 427 HOH HOH . C 3 HOH A 28 428 428 HOH HOH . C 3 HOH A 29 429 429 HOH HOH . C 3 HOH A 30 430 430 HOH HOH . C 3 HOH A 31 431 431 HOH HOH . C 3 HOH A 32 432 432 HOH HOH . C 3 HOH A 33 433 433 HOH HOH . C 3 HOH A 34 434 434 HOH HOH . C 3 HOH A 35 435 435 HOH HOH . C 3 HOH A 36 436 436 HOH HOH . C 3 HOH A 37 437 437 HOH HOH . C 3 HOH A 38 438 438 HOH HOH . C 3 HOH A 39 439 439 HOH HOH . C 3 HOH A 40 440 440 HOH HOH . C 3 HOH A 41 441 441 HOH HOH . C 3 HOH A 42 442 442 HOH HOH . C 3 HOH A 43 443 443 HOH HOH . C 3 HOH A 44 444 444 HOH HOH . C 3 HOH A 45 445 445 HOH HOH . C 3 HOH A 46 446 446 HOH HOH . C 3 HOH A 47 447 447 HOH HOH . C 3 HOH A 48 448 448 HOH HOH . C 3 HOH A 49 449 449 HOH HOH . C 3 HOH A 50 450 450 HOH HOH . C 3 HOH A 51 451 451 HOH HOH . C 3 HOH A 52 452 452 HOH HOH . C 3 HOH A 53 453 453 HOH HOH . C 3 HOH A 54 454 454 HOH HOH . C 3 HOH A 55 455 455 HOH HOH . C 3 HOH A 56 456 456 HOH HOH . C 3 HOH A 57 457 457 HOH HOH . C 3 HOH A 58 458 458 HOH HOH . C 3 HOH A 59 459 459 HOH HOH . C 3 HOH A 60 460 460 HOH HOH . C 3 HOH A 61 461 461 HOH HOH . C 3 HOH A 62 462 462 HOH HOH . C 3 HOH A 63 463 463 HOH HOH . C 3 HOH A 64 464 464 HOH HOH . C 3 HOH A 65 465 465 HOH HOH . C 3 HOH A 66 466 466 HOH HOH . C 3 HOH A 67 467 467 HOH HOH . C 3 HOH A 68 468 468 HOH HOH . C 3 HOH A 69 469 469 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA A3D . . . B 2 6.497 29.233 18.068 1 35.28 ? PA A3D 301 A 1 HETATM 2 O O1A A3D . . . B 2 5.398 30.094 17.583 1 33.84 ? O1A A3D 301 A 1 HETATM 3 O O2A A3D . . . B 2 6.15 27.839 17.788 1 29.95 ? O2A A3D 301 A 1 HETATM 4 O O5B A3D . . . B 2 7.702 29.548 17.049 1 30.3 ? O5B A3D 301 A 1 HETATM 5 C C5B A3D . . . B 2 8.567 28.513 16.689 1 32.77 ? C5B A3D 301 A 1 HETATM 6 C C4B A3D . . . B 2 9.47 29.054 15.613 1 41.75 ? C4B A3D 301 A 1 HETATM 7 O O4B A3D . . . B 2 10.532 28.148 15.197 1 43.09 ? O4B A3D 301 A 1 HETATM 8 C C3B A3D . . . B 2 8.745 29.341 14.31 1 49.25 ? C3B A3D 301 A 1 HETATM 9 O O3B A3D . . . B 2 9.471 30.44 13.727 1 57.21 ? O3B A3D 301 A 1 HETATM 10 C C2B A3D . . . B 2 8.961 28.029 13.533 1 43.92 ? C2B A3D 301 A 1 HETATM 11 O O2B A3D . . . B 2 8.791 28.02 12.122 1 39.8 ? O2B A3D 301 A 1 HETATM 12 C C1B A3D . . . B 2 10.443 27.903 13.793 1 42.34 ? C1B A3D 301 A 1 HETATM 13 N N9A A3D . . . B 2 10.757 26.514 13.613 1 39.7 ? N9A A3D 301 A 1 HETATM 14 C C8A A3D . . . B 2 10.053 25.458 14.171 1 39.9 ? C8A A3D 301 A 1 HETATM 15 N N7A A3D . . . B 2 10.675 24.311 13.994 1 40.01 ? N7A A3D 301 A 1 HETATM 16 C C5A A3D . . . B 2 11.787 24.616 13.201 1 37.01 ? C5A A3D 301 A 1 HETATM 17 C C6A A3D . . . B 2 12.797 23.822 12.632 1 41.97 ? C6A A3D 301 A 1 HETATM 18 N N6A A3D . . . B 2 12.919 22.481 12.789 1 43.95 ? N6A A3D 301 A 1 HETATM 19 N N1A A3D . . . B 2 13.727 24.481 11.882 1 42.96 ? N1A A3D 301 A 1 HETATM 20 C C2A A3D . . . B 2 13.699 25.818 11.787 1 37.18 ? C2A A3D 301 A 1 HETATM 21 N N3A A3D . . . B 2 12.791 26.66 12.269 1 33.02 ? N3A A3D 301 A 1 HETATM 22 C C4A A3D . . . B 2 11.856 25.981 12.958 1 35.5 ? C4A A3D 301 A 1 HETATM 23 O O3 A3D . . . B 2 7.06 29.295 19.472 1 33.35 ? O3 A3D 301 A 1 HETATM 24 P PN A3D . . . B 2 7.806 30.29 20.267 1 24.72 ? PN A3D 301 A 1 HETATM 25 O O1N A3D . . . B 2 6.608 30.352 21.1 1 22.81 ? O1N A3D 301 A 1 HETATM 26 O O2N A3D . . . B 2 8.312 31.528 19.672 1 28.17 ? O2N A3D 301 A 1 HETATM 27 O O5D A3D . . . B 2 8.959 29.543 21.036 1 19.7 ? O5D A3D 301 A 1 HETATM 28 C C5D A3D . . . B 2 10.243 29.948 20.476 1 26.79 ? C5D A3D 301 A 1 HETATM 29 C C4D A3D . . . B 2 11.41 29.23 21.156 1 30.86 ? C4D A3D 301 A 1 HETATM 30 O O4D A3D . . . B 2 12.145 30.088 22.087 1 34.78 ? O4D A3D 301 A 1 HETATM 31 C C3D A3D . . . B 2 10.912 28.046 21.989 1 31.72 ? C3D A3D 301 A 1 HETATM 32 O O3D A3D . . . B 2 11.748 26.843 22.089 1 32.4 ? O3D A3D 301 A 1 HETATM 33 C C2D A3D . . . B 2 10.711 28.703 23.333 1 33.7 ? C2D A3D 301 A 1 HETATM 34 O O2D A3D . . . B 2 10.713 27.719 24.35 1 34.13 ? O2D A3D 301 A 1 HETATM 35 C C1D A3D . . . B 2 11.916 29.635 23.441 1 32.86 ? C1D A3D 301 A 1 HETATM 36 N N1N A3D . . . B 2 11.589 30.752 24.363 1 29.03 ? N1N A3D 301 A 1 HETATM 37 C C2N A3D . . . B 2 12.545 31.178 25.19 1 26.52 ? C2N A3D 301 A 1 HETATM 38 C C3N A3D . . . B 2 12.56 32.214 26.023 1 23.04 ? C3N A3D 301 A 1 HETATM 39 C C7N A3D . . . B 2 13.655 32.505 26.874 1 22.89 ? C7N A3D 301 A 1 HETATM 40 O O7N A3D . . . B 2 13.471 33.266 27.842 1 30.17 ? O7N A3D 301 A 1 HETATM 41 C C8N A3D . . . B 2 14.991 31.776 26.709 1 14.65 ? C8N A3D 301 A 1 HETATM 42 C C4N A3D . . . B 2 11.377 32.874 25.962 1 22.79 ? C4N A3D 301 A 1 HETATM 43 C C5N A3D . . . B 2 10.274 32.547 25.17 1 22.7 ? C5N A3D 301 A 1 HETATM 44 C C6N A3D . . . B 2 10.383 31.393 24.365 1 25.6 ? C6N A3D 301 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 44 #