data_1DRW # _model_server_result.job_id 0GW1cSy3ihvb39QRL-Ao3g _model_server_result.datetime_utc '2025-03-04 21:09:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1drw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 1DRW # _exptl.entry_id 1DRW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 664.41 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICOTINAMIDE PURIN-6-OL-DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1DRW _cell.length_a 75.6 _cell.length_b 81.7 _cell.length_c 93.8 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DRW _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 75.6 0 0 3 'crystal symmetry operation' 3_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 75.6 0 93.8 4 'crystal symmetry operation' 4_556 x,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 93.8 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H26 N6 O15 P2' _chem_comp.formula_weight 664.41 _chem_comp.id NHD _chem_comp.mon_nstd_flag . _chem_comp.name 'NICOTINAMIDE PURIN-6-OL-DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NHD doub 237 n n PA O2A NHD sing 238 n n PA O5B NHD sing 239 n n PA O3 NHD sing 240 n n O2A HOA2 NHD sing 241 n n O5B C5B NHD sing 242 n n C5B C4B NHD sing 243 n n C5B H51A NHD sing 244 n n C5B H52A NHD sing 245 n n C4B O4B NHD sing 246 n n C4B C3B NHD sing 247 n n C4B H4B NHD sing 248 n n O4B C1B NHD sing 249 n n C3B O3B NHD sing 250 n n C3B C2B NHD sing 251 n n C3B H3B NHD sing 252 n n O3B HO3A NHD sing 253 n n C2B O2B NHD sing 254 n n C2B C1B NHD sing 255 n n C2B H2B NHD sing 256 n n O2B HO2A NHD sing 257 n n C1B N9A NHD sing 258 n n C1B H1B NHD sing 259 n n N9A C8A NHD sing 260 n y N9A C4A NHD sing 261 n y C8A N7A NHD doub 262 n y C8A H8A NHD sing 263 n n N7A C5A NHD sing 264 n y C5A C6A NHD sing 265 n y C5A C4A NHD doub 266 n y C6A O6A NHD sing 267 n n C6A N1A NHD doub 268 n y O6A H6A NHD sing 269 n n N1A C2A NHD sing 270 n y C2A N3A NHD doub 271 n y C2A H2A NHD sing 272 n n N3A C4A NHD sing 273 n y O3 PN NHD sing 274 n n PN O1N NHD doub 275 n n PN O2N NHD sing 276 n n PN O5D NHD sing 277 n n O5D C5D NHD sing 278 n n C5D C4D NHD sing 279 n n C5D H51N NHD sing 280 n n C5D H52N NHD sing 281 n n C4D O4D NHD sing 282 n n C4D C3D NHD sing 283 n n C4D H4D NHD sing 284 n n O4D C1D NHD sing 285 n n C3D O3D NHD sing 286 n n C3D C2D NHD sing 287 n n C3D H3D NHD sing 288 n n O3D HO3N NHD sing 289 n n C2D O2D NHD sing 290 n n C2D C1D NHD sing 291 n n C2D H2D NHD sing 292 n n O2D HO2N NHD sing 293 n n C1D N1N NHD sing 294 n n C1D H1D NHD sing 295 n n N1N C2N NHD sing 296 n y N1N C6N NHD doub 297 n y C2N C3N NHD doub 298 n y C2N H2N NHD sing 299 n n C3N C7N NHD sing 300 n n C3N C4N NHD sing 301 n y C7N O7N NHD doub 302 n n C7N N7N NHD sing 303 n n N7N H71N NHD sing 304 n n N7N H72N NHD sing 305 n n C4N C5N NHD doub 306 n y C4N H4N NHD sing 307 n n C5N C6N NHD sing 308 n y C5N H5N NHD sing 309 n n C6N H6N NHD sing 310 n n # _atom_sites.entry_id 1DRW _atom_sites.fract_transf_matrix[1][1] 0.013228 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01224 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010661 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NHD A 1 301 301 NHD NHD . C 3 HOH A 1 401 401 HOH HOH . C 3 HOH A 2 402 402 HOH HOH . C 3 HOH A 3 403 403 HOH HOH . C 3 HOH A 4 404 404 HOH HOH . C 3 HOH A 5 405 405 HOH HOH . C 3 HOH A 6 406 406 HOH HOH . C 3 HOH A 7 407 407 HOH HOH . C 3 HOH A 8 408 408 HOH HOH . C 3 HOH A 9 412 412 HOH HOH . C 3 HOH A 10 413 413 HOH HOH . C 3 HOH A 11 414 414 HOH HOH . C 3 HOH A 12 415 415 HOH HOH . C 3 HOH A 13 416 416 HOH HOH . C 3 HOH A 14 417 417 HOH HOH . C 3 HOH A 15 418 418 HOH HOH . C 3 HOH A 16 419 419 HOH HOH . C 3 HOH A 17 420 420 HOH HOH . C 3 HOH A 18 421 421 HOH HOH . C 3 HOH A 19 422 422 HOH HOH . C 3 HOH A 20 423 423 HOH HOH . C 3 HOH A 21 424 424 HOH HOH . C 3 HOH A 22 425 425 HOH HOH . C 3 HOH A 23 426 426 HOH HOH . C 3 HOH A 24 427 427 HOH HOH . C 3 HOH A 25 428 428 HOH HOH . C 3 HOH A 26 429 429 HOH HOH . C 3 HOH A 27 430 430 HOH HOH . C 3 HOH A 28 431 431 HOH HOH . C 3 HOH A 29 432 432 HOH HOH . C 3 HOH A 30 433 433 HOH HOH . C 3 HOH A 31 434 434 HOH HOH . C 3 HOH A 32 435 435 HOH HOH . C 3 HOH A 33 436 436 HOH HOH . C 3 HOH A 34 437 437 HOH HOH . C 3 HOH A 35 438 438 HOH HOH . C 3 HOH A 36 439 439 HOH HOH . C 3 HOH A 37 440 440 HOH HOH . C 3 HOH A 38 441 441 HOH HOH . C 3 HOH A 39 442 442 HOH HOH . C 3 HOH A 40 443 443 HOH HOH . C 3 HOH A 41 444 444 HOH HOH . C 3 HOH A 42 445 445 HOH HOH . C 3 HOH A 43 446 446 HOH HOH . C 3 HOH A 44 447 447 HOH HOH . C 3 HOH A 45 448 448 HOH HOH . C 3 HOH A 46 449 449 HOH HOH . C 3 HOH A 47 450 450 HOH HOH . C 3 HOH A 48 451 451 HOH HOH . C 3 HOH A 49 452 452 HOH HOH . C 3 HOH A 50 453 453 HOH HOH . C 3 HOH A 51 454 454 HOH HOH . C 3 HOH A 52 455 455 HOH HOH . C 3 HOH A 53 456 456 HOH HOH . C 3 HOH A 54 457 457 HOH HOH . C 3 HOH A 55 458 458 HOH HOH . C 3 HOH A 56 459 459 HOH HOH . C 3 HOH A 57 460 460 HOH HOH . C 3 HOH A 58 461 461 HOH HOH . C 3 HOH A 59 462 462 HOH HOH . C 3 HOH A 60 463 463 HOH HOH . C 3 HOH A 61 464 464 HOH HOH . C 3 HOH A 62 465 465 HOH HOH . C 3 HOH A 63 466 466 HOH HOH . C 3 HOH A 64 467 467 HOH HOH . C 3 HOH A 65 468 468 HOH HOH . C 3 HOH A 66 469 469 HOH HOH . C 3 HOH A 67 470 470 HOH HOH . C 3 HOH A 68 471 471 HOH HOH . C 3 HOH A 69 472 472 HOH HOH . C 3 HOH A 70 474 474 HOH HOH . C 3 HOH A 71 475 475 HOH HOH . C 3 HOH A 72 476 476 HOH HOH . C 3 HOH A 73 478 478 HOH HOH . C 3 HOH A 74 479 479 HOH HOH . C 3 HOH A 75 481 481 HOH HOH . C 3 HOH A 76 482 482 HOH HOH . C 3 HOH A 77 483 483 HOH HOH . C 3 HOH A 78 484 484 HOH HOH . C 3 HOH A 79 485 485 HOH HOH . C 3 HOH A 80 486 486 HOH HOH . C 3 HOH A 81 487 487 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NHD . . . B 2 29.892 10.474 17.105 1 47.28 ? PA NHD 301 A 1 HETATM 2 O O1A NHD . . . B 2 30.781 9.27 17.253 1 47.52 ? O1A NHD 301 A 1 HETATM 3 O O2A NHD . . . B 2 30.399 11.829 16.751 1 49.93 ? O2A NHD 301 A 1 HETATM 4 O O5B NHD . . . B 2 29.025 10.005 15.845 1 44.78 ? O5B NHD 301 A 1 HETATM 5 C C5B NHD . . . B 2 27.992 10.764 15.246 1 43.57 ? C5B NHD 301 A 1 HETATM 6 C C4B NHD . . . B 2 27.209 9.72 14.519 1 43.89 ? C4B NHD 301 A 1 HETATM 7 O O4B NHD . . . B 2 26.019 10.313 13.958 1 48.44 ? O4B NHD 301 A 1 HETATM 8 C C3B NHD . . . B 2 27.92 9.097 13.346 1 44.3 ? C3B NHD 301 A 1 HETATM 9 O O3B NHD . . . B 2 27.161 7.944 13.106 1 43.36 ? O3B NHD 301 A 1 HETATM 10 C C2B NHD . . . B 2 27.642 10.208 12.318 1 49.32 ? C2B NHD 301 A 1 HETATM 11 O O2B NHD . . . B 2 28.008 10.032 10.933 1 51.15 ? O2B NHD 301 A 1 HETATM 12 C C1B NHD . . . B 2 26.133 10.346 12.548 1 47.83 ? C1B NHD 301 A 1 HETATM 13 N N9A NHD . . . B 2 25.613 11.661 12.165 1 44.63 ? N9A NHD 301 A 1 HETATM 14 C C8A NHD . . . B 2 25.96 12.969 12.513 1 45.98 ? C8A NHD 301 A 1 HETATM 15 N N7A NHD . . . B 2 25.112 13.854 12.055 1 45.71 ? N7A NHD 301 A 1 HETATM 16 C C5A NHD . . . B 2 24.165 13.061 11.373 1 43.31 ? C5A NHD 301 A 1 HETATM 17 C C6A NHD . . . B 2 23.04 13.405 10.578 1 43.23 ? C6A NHD 301 A 1 HETATM 18 O O6A NHD . . . B 2 22.71 14.713 10.367 1 43.44 ? O6A NHD 301 A 1 HETATM 19 N N1A NHD . . . B 2 22.224 12.38 10.152 1 41.49 ? N1A NHD 301 A 1 HETATM 20 C C2A NHD . . . B 2 22.599 11.114 10.349 1 39.12 ? C2A NHD 301 A 1 HETATM 21 N N3A NHD . . . B 2 23.693 10.67 10.98 1 40.53 ? N3A NHD 301 A 1 HETATM 22 C C4A NHD . . . B 2 24.412 11.702 11.496 1 42.11 ? C4A NHD 301 A 1 HETATM 23 O O3 NHD . . . B 2 29.048 10.57 18.357 1 48.95 ? O3 NHD 301 A 1 HETATM 24 P PN NHD . . . B 2 28.652 9.638 19.457 1 39.22 ? PN NHD 301 A 1 HETATM 25 O O1N NHD . . . B 2 29.735 9.932 20.461 1 41.02 ? O1N NHD 301 A 1 HETATM 26 O O2N NHD . . . B 2 28.175 8.277 19.044 1 34.73 ? O2N NHD 301 A 1 HETATM 27 O O5D NHD . . . B 2 27.47 10.463 20.113 1 39.08 ? O5D NHD 301 A 1 HETATM 28 C C5D NHD . . . B 2 26.179 10.256 19.575 1 35.48 ? C5D NHD 301 A 1 HETATM 29 C C4D NHD . . . B 2 25.154 10.98 20.412 1 30.8 ? C4D NHD 301 A 1 HETATM 30 O O4D NHD . . . B 2 24.956 10.215 21.637 1 27.97 ? O4D NHD 301 A 1 HETATM 31 C C3D NHD . . . B 2 25.555 12.398 20.834 1 30.46 ? C3D NHD 301 A 1 HETATM 32 O O3D NHD . . . B 2 24.448 13.401 20.597 1 32.21 ? O3D NHD 301 A 1 HETATM 33 C C2D NHD . . . B 2 25.893 12.163 22.326 1 27.89 ? C2D NHD 301 A 1 HETATM 34 O O2D NHD . . . B 2 25.834 13.375 23.057 1 29.05 ? O2D NHD 301 A 1 HETATM 35 C C1D NHD . . . B 2 24.85 11.111 22.712 1 25.13 ? C1D NHD 301 A 1 HETATM 36 N N1N NHD . . . B 2 25.111 10.256 23.838 1 28.72 ? N1N NHD 301 A 1 HETATM 37 C C2N NHD . . . B 2 24.127 10.02 24.747 1 34.1 ? C2N NHD 301 A 1 HETATM 38 C C3N NHD . . . B 2 24.132 9.209 25.856 1 36.27 ? C3N NHD 301 A 1 HETATM 39 C C7N NHD . . . B 2 22.945 8.865 26.587 1 32.71 ? C7N NHD 301 A 1 HETATM 40 O O7N NHD . . . B 2 22.906 7.756 27.469 1 32.02 ? O7N NHD 301 A 1 HETATM 41 N N7N NHD . . . B 2 21.841 9.508 26.208 1 27.72 ? N7N NHD 301 A 1 HETATM 42 C C4N NHD . . . B 2 25.314 8.536 25.923 1 34.63 ? C4N NHD 301 A 1 HETATM 43 C C5N NHD . . . B 2 26.402 8.682 25.043 1 34.36 ? C5N NHD 301 A 1 HETATM 44 C C6N NHD . . . B 2 26.289 9.568 23.932 1 31.57 ? C6N NHD 301 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 44 #