data_1DS7 # _model_server_result.job_id pDxHD7a2XiGTVikI0v72EQ _model_server_result.datetime_utc '2024-11-08 12:02:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ds7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":218}' # _entry.id 1DS7 # _exptl.entry_id 1DS7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1DS7 _cell.length_a 57.74 _cell.length_b 57.74 _cell.length_c 275.51 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DS7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 1DS7 _atom_sites.fract_transf_matrix[1][1] 0.017319 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017319 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00363 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FMN A 1 218 218 FMN FMN . D 2 FMN B 1 218 218 FMN FMN . E 3 HOH A 1 219 2 HOH HOH . E 3 HOH A 2 220 3 HOH HOH . E 3 HOH A 3 221 5 HOH HOH . E 3 HOH A 4 222 6 HOH HOH . E 3 HOH A 5 223 8 HOH HOH . E 3 HOH A 6 224 11 HOH HOH . E 3 HOH A 7 225 12 HOH HOH . E 3 HOH A 8 226 13 HOH HOH . E 3 HOH A 9 227 15 HOH HOH . E 3 HOH A 10 228 17 HOH HOH . E 3 HOH A 11 229 20 HOH HOH . E 3 HOH A 12 230 22 HOH HOH . E 3 HOH A 13 231 25 HOH HOH . E 3 HOH A 14 232 28 HOH HOH . E 3 HOH A 15 233 33 HOH HOH . E 3 HOH A 16 234 38 HOH HOH . E 3 HOH A 17 235 42 HOH HOH . E 3 HOH A 18 236 48 HOH HOH . E 3 HOH A 19 237 52 HOH HOH . E 3 HOH A 20 238 55 HOH HOH . E 3 HOH A 21 239 56 HOH HOH . E 3 HOH A 22 240 60 HOH HOH . E 3 HOH A 23 241 67 HOH HOH . E 3 HOH A 24 242 68 HOH HOH . E 3 HOH A 25 243 69 HOH HOH . E 3 HOH A 26 244 73 HOH HOH . E 3 HOH A 27 245 74 HOH HOH . E 3 HOH A 28 246 75 HOH HOH . E 3 HOH A 29 247 83 HOH HOH . E 3 HOH A 30 248 85 HOH HOH . E 3 HOH A 31 249 86 HOH HOH . E 3 HOH A 32 250 87 HOH HOH . E 3 HOH A 33 251 88 HOH HOH . E 3 HOH A 34 252 89 HOH HOH . E 3 HOH A 35 253 90 HOH HOH . E 3 HOH A 36 254 91 HOH HOH . E 3 HOH A 37 255 92 HOH HOH . E 3 HOH A 38 256 94 HOH HOH . E 3 HOH A 39 257 95 HOH HOH . E 3 HOH A 40 258 96 HOH HOH . E 3 HOH A 41 259 97 HOH HOH . E 3 HOH A 42 260 98 HOH HOH . E 3 HOH A 43 261 101 HOH HOH . E 3 HOH A 44 262 102 HOH HOH . E 3 HOH A 45 263 104 HOH HOH . E 3 HOH A 46 264 105 HOH HOH . E 3 HOH A 47 265 106 HOH HOH . E 3 HOH A 48 266 107 HOH HOH . E 3 HOH A 49 267 109 HOH HOH . E 3 HOH A 50 268 111 HOH HOH . E 3 HOH A 51 269 112 HOH HOH . E 3 HOH A 52 270 114 HOH HOH . E 3 HOH A 53 271 115 HOH HOH . E 3 HOH A 54 272 118 HOH HOH . E 3 HOH A 55 273 120 HOH HOH . E 3 HOH A 56 274 121 HOH HOH . E 3 HOH A 57 275 123 HOH HOH . E 3 HOH A 58 276 128 HOH HOH . E 3 HOH A 59 277 129 HOH HOH . E 3 HOH A 60 278 130 HOH HOH . E 3 HOH A 61 279 132 HOH HOH . E 3 HOH A 62 280 134 HOH HOH . E 3 HOH A 63 281 137 HOH HOH . E 3 HOH A 64 282 140 HOH HOH . E 3 HOH A 65 283 141 HOH HOH . E 3 HOH A 66 284 142 HOH HOH . E 3 HOH A 67 285 143 HOH HOH . E 3 HOH A 68 286 145 HOH HOH . E 3 HOH A 69 287 146 HOH HOH . E 3 HOH A 70 288 147 HOH HOH . E 3 HOH A 71 289 148 HOH HOH . E 3 HOH A 72 290 155 HOH HOH . E 3 HOH A 73 291 157 HOH HOH . E 3 HOH A 74 292 160 HOH HOH . E 3 HOH A 75 293 161 HOH HOH . E 3 HOH A 76 294 162 HOH HOH . E 3 HOH A 77 295 163 HOH HOH . E 3 HOH A 78 296 166 HOH HOH . E 3 HOH A 79 297 168 HOH HOH . E 3 HOH A 80 298 171 HOH HOH . E 3 HOH A 81 299 174 HOH HOH . E 3 HOH A 82 300 178 HOH HOH . E 3 HOH A 83 301 179 HOH HOH . E 3 HOH A 84 302 180 HOH HOH . E 3 HOH A 85 303 182 HOH HOH . E 3 HOH A 86 304 184 HOH HOH . E 3 HOH A 87 305 186 HOH HOH . E 3 HOH A 88 306 190 HOH HOH . E 3 HOH A 89 307 191 HOH HOH . E 3 HOH A 90 308 192 HOH HOH . E 3 HOH A 91 309 193 HOH HOH . E 3 HOH A 92 310 194 HOH HOH . E 3 HOH A 93 311 199 HOH HOH . E 3 HOH A 94 312 201 HOH HOH . E 3 HOH A 95 313 203 HOH HOH . E 3 HOH A 96 314 204 HOH HOH . E 3 HOH A 97 315 207 HOH HOH . E 3 HOH A 98 316 209 HOH HOH . E 3 HOH A 99 317 210 HOH HOH . E 3 HOH A 100 318 213 HOH HOH . E 3 HOH A 101 319 215 HOH HOH . E 3 HOH A 102 320 216 HOH HOH . E 3 HOH A 103 321 217 HOH HOH . E 3 HOH A 104 322 218 HOH HOH . F 3 HOH B 1 219 1 HOH HOH . F 3 HOH B 2 220 4 HOH HOH . F 3 HOH B 3 221 7 HOH HOH . F 3 HOH B 4 222 9 HOH HOH . F 3 HOH B 5 223 10 HOH HOH . F 3 HOH B 6 224 14 HOH HOH . F 3 HOH B 7 225 16 HOH HOH . F 3 HOH B 8 226 18 HOH HOH . F 3 HOH B 9 227 19 HOH HOH . F 3 HOH B 10 228 21 HOH HOH . F 3 HOH B 11 229 23 HOH HOH . F 3 HOH B 12 230 24 HOH HOH . F 3 HOH B 13 231 26 HOH HOH . F 3 HOH B 14 232 27 HOH HOH . F 3 HOH B 15 233 29 HOH HOH . F 3 HOH B 16 234 30 HOH HOH . F 3 HOH B 17 235 31 HOH HOH . F 3 HOH B 18 236 32 HOH HOH . F 3 HOH B 19 237 34 HOH HOH . F 3 HOH B 20 238 35 HOH HOH . F 3 HOH B 21 239 36 HOH HOH . F 3 HOH B 22 240 37 HOH HOH . F 3 HOH B 23 241 39 HOH HOH . F 3 HOH B 24 242 40 HOH HOH . F 3 HOH B 25 243 41 HOH HOH . F 3 HOH B 26 244 43 HOH HOH . F 3 HOH B 27 245 44 HOH HOH . F 3 HOH B 28 246 45 HOH HOH . F 3 HOH B 29 247 46 HOH HOH . F 3 HOH B 30 248 47 HOH HOH . F 3 HOH B 31 249 49 HOH HOH . F 3 HOH B 32 250 50 HOH HOH . F 3 HOH B 33 251 51 HOH HOH . F 3 HOH B 34 252 53 HOH HOH . F 3 HOH B 35 253 54 HOH HOH . F 3 HOH B 36 254 57 HOH HOH . F 3 HOH B 37 255 58 HOH HOH . F 3 HOH B 38 256 59 HOH HOH . F 3 HOH B 39 257 61 HOH HOH . F 3 HOH B 40 258 62 HOH HOH . F 3 HOH B 41 259 63 HOH HOH . F 3 HOH B 42 260 64 HOH HOH . F 3 HOH B 43 261 65 HOH HOH . F 3 HOH B 44 262 66 HOH HOH . F 3 HOH B 45 263 70 HOH HOH . F 3 HOH B 46 264 71 HOH HOH . F 3 HOH B 47 265 72 HOH HOH . F 3 HOH B 48 266 76 HOH HOH . F 3 HOH B 49 267 77 HOH HOH . F 3 HOH B 50 268 78 HOH HOH . F 3 HOH B 51 269 79 HOH HOH . F 3 HOH B 52 270 80 HOH HOH . F 3 HOH B 53 271 81 HOH HOH . F 3 HOH B 54 272 82 HOH HOH . F 3 HOH B 55 273 84 HOH HOH . F 3 HOH B 56 274 93 HOH HOH . F 3 HOH B 57 275 99 HOH HOH . F 3 HOH B 58 276 100 HOH HOH . F 3 HOH B 59 277 103 HOH HOH . F 3 HOH B 60 278 108 HOH HOH . F 3 HOH B 61 279 110 HOH HOH . F 3 HOH B 62 280 113 HOH HOH . F 3 HOH B 63 281 116 HOH HOH . F 3 HOH B 64 282 117 HOH HOH . F 3 HOH B 65 283 119 HOH HOH . F 3 HOH B 66 284 122 HOH HOH . F 3 HOH B 67 285 124 HOH HOH . F 3 HOH B 68 286 125 HOH HOH . F 3 HOH B 69 287 126 HOH HOH . F 3 HOH B 70 288 127 HOH HOH . F 3 HOH B 71 289 131 HOH HOH . F 3 HOH B 72 290 133 HOH HOH . F 3 HOH B 73 291 135 HOH HOH . F 3 HOH B 74 292 136 HOH HOH . F 3 HOH B 75 293 138 HOH HOH . F 3 HOH B 76 294 139 HOH HOH . F 3 HOH B 77 295 144 HOH HOH . F 3 HOH B 78 296 149 HOH HOH . F 3 HOH B 79 297 150 HOH HOH . F 3 HOH B 80 298 151 HOH HOH . F 3 HOH B 81 299 152 HOH HOH . F 3 HOH B 82 300 153 HOH HOH . F 3 HOH B 83 301 154 HOH HOH . F 3 HOH B 84 302 156 HOH HOH . F 3 HOH B 85 303 158 HOH HOH . F 3 HOH B 86 304 159 HOH HOH . F 3 HOH B 87 305 164 HOH HOH . F 3 HOH B 88 306 165 HOH HOH . F 3 HOH B 89 307 167 HOH HOH . F 3 HOH B 90 308 169 HOH HOH . F 3 HOH B 91 309 170 HOH HOH . F 3 HOH B 92 310 172 HOH HOH . F 3 HOH B 93 311 173 HOH HOH . F 3 HOH B 94 312 175 HOH HOH . F 3 HOH B 95 313 176 HOH HOH . F 3 HOH B 96 314 177 HOH HOH . F 3 HOH B 97 315 181 HOH HOH . F 3 HOH B 98 316 183 HOH HOH . F 3 HOH B 99 317 185 HOH HOH . F 3 HOH B 100 318 187 HOH HOH . F 3 HOH B 101 319 188 HOH HOH . F 3 HOH B 102 320 189 HOH HOH . F 3 HOH B 103 321 195 HOH HOH . F 3 HOH B 104 322 196 HOH HOH . F 3 HOH B 105 323 197 HOH HOH . F 3 HOH B 106 324 198 HOH HOH . F 3 HOH B 107 325 200 HOH HOH . F 3 HOH B 108 326 202 HOH HOH . F 3 HOH B 109 327 205 HOH HOH . F 3 HOH B 110 328 206 HOH HOH . F 3 HOH B 111 329 208 HOH HOH . F 3 HOH B 112 330 211 HOH HOH . F 3 HOH B 113 331 212 HOH HOH . F 3 HOH B 114 332 214 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . D 2 -6.911 -16.043 48.16 1 39.93 ? N1 FMN 218 B 1 HETATM 2 C C2 FMN . . . D 2 -8.251 -16.083 48.467 1 40.22 ? C2 FMN 218 B 1 HETATM 3 O O2 FMN . . . D 2 -9.119 -15.599 47.772 1 37.38 ? O2 FMN 218 B 1 HETATM 4 N N3 FMN . . . D 2 -8.67 -16.732 49.675 1 38.4 ? N3 FMN 218 B 1 HETATM 5 C C4 FMN . . . D 2 -7.85 -17.346 50.546 1 37.88 ? C4 FMN 218 B 1 HETATM 6 O O4 FMN . . . D 2 -8.294 -17.864 51.583 1 35.93 ? O4 FMN 218 B 1 HETATM 7 C C4A FMN . . . D 2 -6.437 -17.356 50.186 1 38.65 ? C4A FMN 218 B 1 HETATM 8 N N5 FMN . . . D 2 -5.573 -17.985 50.954 1 42.03 ? N5 FMN 218 B 1 HETATM 9 C C5A FMN . . . D 2 -4.276 -18.04 50.556 1 39.28 ? C5A FMN 218 B 1 HETATM 10 C C6 FMN . . . D 2 -3.323 -18.808 51.326 1 40.36 ? C6 FMN 218 B 1 HETATM 11 C C7 FMN . . . D 2 -2.034 -18.977 50.963 1 35.76 ? C7 FMN 218 B 1 HETATM 12 C C7M FMN . . . D 2 -1.037 -19.852 51.733 1 33.35 ? C7M FMN 218 B 1 HETATM 13 C C8 FMN . . . D 2 -1.543 -18.306 49.783 1 33.14 ? C8 FMN 218 B 1 HETATM 14 C C8M FMN . . . D 2 -0.113 -18.488 49.348 1 28.49 ? C8M FMN 218 B 1 HETATM 15 C C9 FMN . . . D 2 -2.42 -17.515 49.068 1 37.12 ? C9 FMN 218 B 1 HETATM 16 C C9A FMN . . . D 2 -3.767 -17.385 49.384 1 39.27 ? C9A FMN 218 B 1 HETATM 17 N N10 FMN . . . D 2 -4.707 -16.662 48.62 1 39.8 ? N10 FMN 218 B 1 HETATM 18 C C10 FMN . . . D 2 -6.039 -16.651 48.945 1 38.64 ? C10 FMN 218 B 1 HETATM 19 C C1' FMN . . . D 2 -4.271 -15.934 47.402 1 38.21 ? C1' FMN 218 B 1 HETATM 20 C C2' FMN . . . D 2 -3.272 -14.827 47.727 1 36.28 ? C2' FMN 218 B 1 HETATM 21 O O2' FMN . . . D 2 -3.899 -13.636 48.217 1 41.12 ? O2' FMN 218 B 1 HETATM 22 C C3' FMN . . . D 2 -2.449 -14.47 46.46 1 35.1 ? C3' FMN 218 B 1 HETATM 23 O O3' FMN . . . D 2 -1.317 -15.399 46.362 1 40.46 ? O3' FMN 218 B 1 HETATM 24 C C4' FMN . . . D 2 -1.902 -13.058 46.434 1 34.1 ? C4' FMN 218 B 1 HETATM 25 O O4' FMN . . . D 2 -2.992 -12.098 46.415 1 35.02 ? O4' FMN 218 B 1 HETATM 26 C C5' FMN . . . D 2 -1.001 -12.769 45.239 1 25.85 ? C5' FMN 218 B 1 HETATM 27 O O5' FMN . . . D 2 -1.734 -12.96 44.017 1 21 ? O5' FMN 218 B 1 HETATM 28 P P FMN . . . D 2 -1.402 -14.129 42.998 1 22.86 ? P FMN 218 B 1 HETATM 29 O O1P FMN . . . D 2 -2.348 -13.977 41.837 1 22.49 ? O1P FMN 218 B 1 HETATM 30 O O2P FMN . . . D 2 -1.492 -15.439 43.729 1 17.78 ? O2P FMN 218 B 1 HETATM 31 O O3P FMN . . . D 2 0.038 -13.845 42.501 1 14.37 ? O3P FMN 218 B 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 245 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #