data_1DSG
#
_model_server_result.job_id            mTa2sQOSB1W4qwazmltscw 
_model_server_result.datetime_utc      '2024-10-14 08:20:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1dsg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1001}' 
#
_entry.id    1DSG 
#
_exptl.entry_id    1DSG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1DSG 
_cell.length_a            107.9 
_cell.length_b            76.61 
_cell.length_c            51.47 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1DSG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 D O HOH . A HOH 391 1_555 B FE HEM . A HEM 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.829 ? 
metalc ? metalc2 B FE HEM . A HEM 1001 1_555 C N3 IMD . A IMD 1500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.87 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 129 n n 
CHA C4D HEM doub 130 n n 
CHA HHA HEM sing 131 n n 
CHB C4A HEM sing 132 n n 
CHB C1B HEM doub 133 n n 
CHB HHB HEM sing 134 n n 
CHC C4B HEM sing 135 n n 
CHC C1C HEM doub 136 n n 
CHC HHC HEM sing 137 n n 
CHD C4C HEM doub 138 n n 
CHD C1D HEM sing 139 n n 
CHD HHD HEM sing 140 n n 
C1A C2A HEM doub 141 n y 
C1A NA HEM sing 142 n y 
C2A C3A HEM sing 143 n y 
C2A CAA HEM sing 144 n n 
C3A C4A HEM doub 145 n y 
C3A CMA HEM sing 146 n n 
C4A NA HEM sing 147 n y 
CMA HMA HEM sing 148 n n 
CMA HMAA HEM sing 149 n n 
CMA HMAB HEM sing 150 n n 
CAA CBA HEM sing 151 n n 
CAA HAA HEM sing 152 n n 
CAA HAAA HEM sing 153 n n 
CBA CGA HEM sing 154 n n 
CBA HBA HEM sing 155 n n 
CBA HBAA HEM sing 156 n n 
CGA O1A HEM doub 157 n n 
CGA O2A HEM sing 158 n n 
C1B C2B HEM sing 159 n n 
C1B NB HEM sing 160 n n 
C2B C3B HEM doub 161 n n 
C2B CMB HEM sing 162 n n 
C3B C4B HEM sing 163 n n 
C3B CAB HEM sing 164 n n 
C4B NB HEM doub 165 n n 
CMB HMB HEM sing 166 n n 
CMB HMBA HEM sing 167 n n 
CMB HMBB HEM sing 168 n n 
CAB CBB HEM doub 169 n n 
CAB HAB HEM sing 170 n n 
CBB HBB HEM sing 171 n n 
CBB HBBA HEM sing 172 n n 
C1C C2C HEM sing 173 n y 
C1C NC HEM sing 174 n y 
C2C C3C HEM doub 175 n y 
C2C CMC HEM sing 176 n n 
C3C C4C HEM sing 177 n y 
C3C CAC HEM sing 178 n n 
C4C NC HEM sing 179 n y 
CMC HMC HEM sing 180 n n 
CMC HMCA HEM sing 181 n n 
CMC HMCB HEM sing 182 n n 
CAC CBC HEM doub 183 n n 
CAC HAC HEM sing 184 n n 
CBC HBC HEM sing 185 n n 
CBC HBCA HEM sing 186 n n 
C1D C2D HEM sing 187 n n 
C1D ND HEM doub 188 n n 
C2D C3D HEM doub 189 n n 
C2D CMD HEM sing 190 n n 
C3D C4D HEM sing 191 n n 
C3D CAD HEM sing 192 n n 
C4D ND HEM sing 193 n n 
CMD HMD HEM sing 194 n n 
CMD HMDA HEM sing 195 n n 
CMD HMDB HEM sing 196 n n 
CAD CBD HEM sing 197 n n 
CAD HAD HEM sing 198 n n 
CAD HADA HEM sing 199 n n 
CBD CGD HEM sing 200 n n 
CBD HBD HEM sing 201 n n 
CBD HBDA HEM sing 202 n n 
CGD O1D HEM doub 203 n n 
CGD O2D HEM sing 204 n n 
O2A H2A HEM sing 205 n n 
O2D H2D HEM sing 206 n n 
FE NA HEM sing 207 n n 
FE NB HEM sing 208 n n 
FE NC HEM sing 209 n n 
FE ND HEM sing 210 n n 
#
_atom_sites.entry_id                     1DSG 
_atom_sites.fract_transf_matrix[1][1]    0.009268 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013053 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019429 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 1001 1 HEM HEM . 
C 3 IMD A 1 1500 575 IMD IMD . 
D 4 HOH A 1 302 302 HOH HOH . 
D 4 HOH A 2 304 304 HOH HOH . 
D 4 HOH A 3 305 305 HOH HOH . 
D 4 HOH A 4 306 306 HOH HOH . 
D 4 HOH A 5 308 308 HOH HOH . 
D 4 HOH A 6 310 310 HOH HOH . 
D 4 HOH A 7 311 311 HOH HOH . 
D 4 HOH A 8 312 312 HOH HOH . 
D 4 HOH A 9 314 314 HOH HOH . 
D 4 HOH A 10 317 317 HOH HOH . 
D 4 HOH A 11 319 319 HOH HOH . 
D 4 HOH A 12 320 320 HOH HOH . 
D 4 HOH A 13 321 321 HOH HOH . 
D 4 HOH A 14 322 322 HOH HOH . 
D 4 HOH A 15 323 323 HOH HOH . 
D 4 HOH A 16 324 324 HOH HOH . 
D 4 HOH A 17 325 325 HOH HOH . 
D 4 HOH A 18 327 327 HOH HOH . 
D 4 HOH A 19 328 328 HOH HOH . 
D 4 HOH A 20 332 332 HOH HOH . 
D 4 HOH A 21 333 333 HOH HOH . 
D 4 HOH A 22 334 334 HOH HOH . 
D 4 HOH A 23 335 335 HOH HOH . 
D 4 HOH A 24 336 336 HOH HOH . 
D 4 HOH A 25 339 339 HOH HOH . 
D 4 HOH A 26 341 341 HOH HOH . 
D 4 HOH A 27 342 342 HOH HOH . 
D 4 HOH A 28 345 345 HOH HOH . 
D 4 HOH A 29 347 347 HOH HOH . 
D 4 HOH A 30 349 349 HOH HOH . 
D 4 HOH A 31 350 350 HOH HOH . 
D 4 HOH A 32 351 351 HOH HOH . 
D 4 HOH A 33 352 352 HOH HOH . 
D 4 HOH A 34 353 353 HOH HOH . 
D 4 HOH A 35 354 354 HOH HOH . 
D 4 HOH A 36 355 355 HOH HOH . 
D 4 HOH A 37 356 356 HOH HOH . 
D 4 HOH A 38 357 357 HOH HOH . 
D 4 HOH A 39 358 358 HOH HOH . 
D 4 HOH A 40 359 359 HOH HOH . 
D 4 HOH A 41 360 360 HOH HOH . 
D 4 HOH A 42 361 361 HOH HOH . 
D 4 HOH A 43 362 362 HOH HOH . 
D 4 HOH A 44 363 363 HOH HOH . 
D 4 HOH A 45 364 364 HOH HOH . 
D 4 HOH A 46 365 365 HOH HOH . 
D 4 HOH A 47 366 366 HOH HOH . 
D 4 HOH A 48 367 367 HOH HOH . 
D 4 HOH A 49 368 368 HOH HOH . 
D 4 HOH A 50 369 369 HOH HOH . 
D 4 HOH A 51 370 370 HOH HOH . 
D 4 HOH A 52 371 371 HOH HOH . 
D 4 HOH A 53 372 372 HOH HOH . 
D 4 HOH A 54 373 373 HOH HOH . 
D 4 HOH A 55 374 374 HOH HOH . 
D 4 HOH A 56 375 375 HOH HOH . 
D 4 HOH A 57 376 376 HOH HOH . 
D 4 HOH A 58 377 377 HOH HOH . 
D 4 HOH A 59 378 378 HOH HOH . 
D 4 HOH A 60 379 379 HOH HOH . 
D 4 HOH A 61 380 380 HOH HOH . 
D 4 HOH A 62 381 381 HOH HOH . 
D 4 HOH A 63 382 382 HOH HOH . 
D 4 HOH A 64 383 383 HOH HOH . 
D 4 HOH A 65 384 384 HOH HOH . 
D 4 HOH A 66 385 385 HOH HOH . 
D 4 HOH A 67 386 386 HOH HOH . 
D 4 HOH A 68 387 387 HOH HOH . 
D 4 HOH A 69 388 388 HOH HOH . 
D 4 HOH A 70 389 389 HOH HOH . 
D 4 HOH A 71 390 390 HOH HOH . 
D 4 HOH A 72 391 391 HOH HOH . 
D 4 HOH A 73 392 392 HOH HOH . 
D 4 HOH A 74 393 393 HOH HOH . 
D 4 HOH A 75 394 394 HOH HOH . 
D 4 HOH A 76 395 395 HOH HOH . 
D 4 HOH A 77 396 396 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . B 2 27.956 18.719 -1.729 1 3.81 ? CHA HEM 1001 A 1 
HETATM 2 C CHB HEM . . . B 2 30.685 18.543 2.2 1 14.47 ? CHB HEM 1001 A 1 
HETATM 3 C CHC HEM . . . B 2 28.507 14.537 3.441 1 10.93 ? CHC HEM 1001 A 1 
HETATM 4 C CHD HEM . . . B 2 25.596 14.839 -0.276 1 10.05 ? CHD HEM 1001 A 1 
HETATM 5 C C1A HEM . . . B 2 28.8 19.175 -0.679 1 7.83 ? C1A HEM 1001 A 1 
HETATM 6 C C2A HEM . . . B 2 29.761 20.154 -0.848 1 10.44 ? C2A HEM 1001 A 1 
HETATM 7 C C3A HEM . . . B 2 30.549 20.119 0.312 1 11.78 ? C3A HEM 1001 A 1 
HETATM 8 C C4A HEM . . . B 2 30.189 18.947 0.954 1 11.03 ? C4A HEM 1001 A 1 
HETATM 9 C CMA HEM . . . B 2 31.821 20.93 0.531 1 12.27 ? CMA HEM 1001 A 1 
HETATM 10 C CAA HEM . . . B 2 29.712 21.28 -1.895 1 12.76 ? CAA HEM 1001 A 1 
HETATM 11 C CBA HEM . . . B 2 28.433 22.087 -1.886 1 14.36 ? CBA HEM 1001 A 1 
HETATM 12 C CGA HEM . . . B 2 28.517 23.294 -2.844 1 16.11 ? CGA HEM 1001 A 1 
HETATM 13 O O1A HEM . . . B 2 29.623 23.768 -3.115 1 15.95 ? O1A HEM 1001 A 1 
HETATM 14 O O2A HEM . . . B 2 27.592 23.493 -3.633 1 9.48 ? O2A HEM 1001 A 1 
HETATM 15 C C1B HEM . . . B 2 30.195 17.55 3.075 1 14.99 ? C1B HEM 1001 A 1 
HETATM 16 C C2B HEM . . . B 2 30.923 17.067 4.171 1 15.06 ? C2B HEM 1001 A 1 
HETATM 17 C C3B HEM . . . B 2 30.455 15.768 4.355 1 13.57 ? C3B HEM 1001 A 1 
HETATM 18 C C4B HEM . . . B 2 29.445 15.58 3.403 1 9.73 ? C4B HEM 1001 A 1 
HETATM 19 C CMB HEM . . . B 2 32.183 17.746 4.692 1 19.54 ? CMB HEM 1001 A 1 
HETATM 20 C CAB HEM . . . B 2 30.593 14.953 5.49 1 15.78 ? CAB HEM 1001 A 1 
HETATM 21 C CBB HEM . . . B 2 31.73 14.948 6.379 1 5.08 ? CBB HEM 1001 A 1 
HETATM 22 C C1C HEM . . . B 2 27.278 14.421 2.752 1 14.33 ? C1C HEM 1001 A 1 
HETATM 23 C C2C HEM . . . B 2 26.433 13.316 2.852 1 12.67 ? C2C HEM 1001 A 1 
HETATM 24 C C3C HEM . . . B 2 25.619 13.377 1.712 1 12.58 ? C3C HEM 1001 A 1 
HETATM 25 C C4C HEM . . . B 2 26.147 14.421 0.944 1 12.07 ? C4C HEM 1001 A 1 
HETATM 26 C CMC HEM . . . B 2 26.346 12.385 4.073 1 4.97 ? CMC HEM 1001 A 1 
HETATM 27 C CAC HEM . . . B 2 24.321 12.911 1.458 1 10.92 ? CAC HEM 1001 A 1 
HETATM 28 C CBC HEM . . . B 2 23.829 11.55 1.465 1 3.93 ? CBC HEM 1001 A 1 
HETATM 29 C C1D HEM . . . B 2 26.049 15.872 -1.087 1 11.48 ? C1D HEM 1001 A 1 
HETATM 30 C C2D HEM . . . B 2 25.698 16.047 -2.421 1 13.58 ? C2D HEM 1001 A 1 
HETATM 31 C C3D HEM . . . B 2 26.197 17.316 -2.747 1 7.59 ? C3D HEM 1001 A 1 
HETATM 32 C C4D HEM . . . B 2 27.082 17.628 -1.71 1 5.74 ? C4D HEM 1001 A 1 
HETATM 33 C CMD HEM . . . B 2 24.714 15.251 -3.264 1 7.54 ? CMD HEM 1001 A 1 
HETATM 34 C CAD HEM . . . B 2 26.156 17.938 -4.151 1 7.91 ? CAD HEM 1001 A 1 
HETATM 35 C CBD HEM . . . B 2 25.084 19.036 -4.285 1 13.99 ? CBD HEM 1001 A 1 
HETATM 36 C CGD HEM . . . B 2 25.057 19.713 -5.669 1 17.71 ? CGD HEM 1001 A 1 
HETATM 37 O O1D HEM . . . B 2 24.408 20.74 -5.778 1 16.02 ? O1D HEM 1001 A 1 
HETATM 38 O O2D HEM . . . B 2 25.877 19.351 -6.497 1 15.55 ? O2D HEM 1001 A 1 
HETATM 39 N NA HEM . . . B 2 29.106 18.407 0.382 1 9.29 ? NA HEM 1001 A 1 
HETATM 40 N NB HEM . . . B 2 29.196 16.724 2.767 1 14.73 ? NB HEM 1001 A 1 
HETATM 41 N NC HEM . . . B 2 26.975 15.177 1.685 1 12.55 ? NC HEM 1001 A 1 
HETATM 42 N ND HEM . . . B 2 27.004 16.729 -0.719 1 11.83 ? ND HEM 1001 A 1 
HETATM 43 FE FE HEM . . . B 2 27.873 16.962 1.182 1 9.43 ? FE HEM 1001 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           289 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           43 
#