data_1DSM # _model_server_result.job_id TjE7-Q-U5H07AQ3k00bk-w _model_server_result.datetime_utc '2024-10-18 14:30:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1dsm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":23}' # _entry.id 1DSM # _exptl.entry_id 1DSM _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 479.482 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-HYDROXY-8-METHYL-6-(4,5,6-TRIMETHOXY-1H-INDOLE-2-CARBONYL)-3,6,7,8-TETRAHYDRO-3,6-DIAZA-AS-INDACENE-2-CARBOXYLIC ACID METHYL ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1DSM _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DSM _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A N3 DA 5 A DA 5 1_555 C C13 DSA . A DSA 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.489 ? hydrog WATSON-CRICK hydrog1 A N1 DG 1 A DG 1 1_555 B N3 DC 11 B DC 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N2 DG 1 A DG 1 1_555 B O2 DC 11 B DC 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O6 DG 1 A DG 1 1_555 B N4 DC 11 B DC 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N1 DA 2 A DA 2 1_555 B N3 DT 10 B DT 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N6 DA 2 A DA 2 1_555 B O4 DT 10 B DT 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DC-DA MISPAIR' hydrog6 A N4 DC 3 A DC 3 1_555 B N1 DA 8 B DA 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N3 DC 3 A DC 3 1_555 B N1 DG 9 B DG 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N4 DC 3 A DC 3 1_555 B O6 DG 9 B DG 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A O2 DC 3 A DC 3 1_555 B N2 DG 9 B DG 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N3 DT 4 A DT 4 1_555 B N1 DA 8 B DA 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A O4 DT 4 A DT 4 1_555 B N6 DA 8 B DA 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N1 DA 5 A DA 5 1_555 B N3 DT 7 B DT 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N6 DA 5 A DA 5 1_555 B O4 DT 7 B DT 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N1 DA 6 A DA 6 1_555 B N3 DT 6 B DT 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N6 DA 6 A DA 6 1_555 B O4 DT 6 B DT 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N3 DT 7 A DT 7 1_555 B N1 DA 5 B DA 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A O4 DT 7 A DT 7 1_555 B N6 DA 5 B DA 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N3 DT 8 A DT 8 1_555 B N1 DA 4 B DA 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A O4 DT 8 A DT 8 1_555 B N6 DA 4 B DA 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N1 DG 9 A DG 9 1_555 B N3 DC 3 B DC 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A N2 DG 9 A DG 9 1_555 B O2 DC 3 B DC 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A O6 DG 9 A DG 9 1_555 B N4 DC 3 B DC 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A N1 DA 10 A DA 10 1_555 B N3 DT 2 B DT 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A N6 DA 10 A DA 10 1_555 B O4 DT 2 B DT 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A N3 DC 11 A DC 11 1_555 B N1 DG 1 B DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A N4 DC 11 A DC 11 1_555 B O6 DG 1 B DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 A O2 DC 11 A DC 11 1_555 B N2 DG 1 B DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C25 H25 N3 O7' _chem_comp.formula_weight 479.482 _chem_comp.id DSA _chem_comp.mon_nstd_flag . _chem_comp.name '4-HYDROXY-8-METHYL-6-(4,5,6-TRIMETHOXY-1H-INDOLE-2-CARBONYL)-3,6,7,8-TETRAHYDRO-3,6-DIAZA-AS-INDACENE-2-CARBOXYLIC ACID METHYL ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(+)DUOCARMYCIN SA' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C20 C21 DSA doub 113 n y C20 C25 DSA sing 114 n y C20 C19 DSA sing 115 n y C21 C22 DSA sing 116 n y C21 N17 DSA sing 117 n y C22 C23 DSA doub 118 n y C22 O22 DSA sing 119 n n C23 C24 DSA sing 120 n y C23 O23 DSA sing 121 n n C24 C25 DSA doub 122 n y C24 O24 DSA sing 123 n n C25 H25 DSA sing 124 n n C18 C19 DSA doub 125 n y C18 C16 DSA sing 126 n n C18 N17 DSA sing 127 n y C19 H19 DSA sing 128 n n C16 N12 DSA sing 129 n n C16 O16 DSA doub 130 n n C6 C7 DSA sing 131 n y C6 C5 DSA doub 132 n y C6 O6 DSA sing 133 n n C7 C8 DSA doub 134 n y C7 H7 DSA sing 135 n n C8 C9 DSA sing 136 n y C8 N12 DSA sing 137 n n C11 C10 DSA sing 138 n n C11 N12 DSA sing 139 n n C11 H111 DSA sing 140 n n C11 H112 DSA sing 141 n n C10 C13 DSA sing 142 n n C10 C9 DSA sing 143 n n C10 H10 DSA sing 144 n n C13 H131 DSA sing 145 n n C13 H132 DSA sing 146 n n C13 H133 DSA sing 147 n n C9 C4 DSA doub 148 n y C26 O22 DSA sing 149 n n C26 H261 DSA sing 150 n n C26 H262 DSA sing 151 n n C26 H263 DSA sing 152 n n C27 O23 DSA sing 153 n n C27 H271 DSA sing 154 n n C27 H272 DSA sing 155 n n C27 H273 DSA sing 156 n n C5 C4 DSA sing 157 n y C5 N1 DSA sing 158 n y C4 C3 DSA sing 159 n y C3 C2 DSA doub 160 n y C3 H3 DSA sing 161 n n C2 C14 DSA sing 162 n n C2 N1 DSA sing 163 n y C14 O15 DSA sing 164 n n C14 O14 DSA doub 165 n n C28 O24 DSA sing 166 n n C28 H281 DSA sing 167 n n C28 H282 DSA sing 168 n n C28 H283 DSA sing 169 n n C15 O15 DSA sing 170 n n C15 H151 DSA sing 171 n n C15 H152 DSA sing 172 n n C15 H153 DSA sing 173 n n N17 H17 DSA sing 174 n n N1 H1 DSA sing 175 n n O6 H6 DSA sing 176 n n # _atom_sites.entry_id 1DSM _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 3 _pdbx_nonpoly_scheme.mon_id DSA _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 23 _pdbx_nonpoly_scheme.auth_seq_num 23 _pdbx_nonpoly_scheme.pdb_mon_id DSA _pdbx_nonpoly_scheme.auth_mon_id DSA _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C20 DSA . . . C 3 -0.601 0.58 1.758 1 0 ? C20 DSA 23 A 1 HETATM 2 C C21 DSA . . . C 3 -1.094 0.502 0.427 1 0 ? C21 DSA 23 A 1 HETATM 3 C C22 DSA . . . C 3 -0.235 0.339 -0.68 1 0 ? C22 DSA 23 A 1 HETATM 4 C C23 DSA . . . C 3 1.15 0.241 -0.453 1 0 ? C23 DSA 23 A 1 HETATM 5 C C24 DSA . . . C 3 1.659 0.245 0.86 1 0 ? C24 DSA 23 A 1 HETATM 6 C C25 DSA . . . C 3 0.79 0.45 1.953 1 0 ? C25 DSA 23 A 1 HETATM 7 C C18 DSA . . . C 3 -2.884 0.678 1.839 1 0 ? C18 DSA 23 A 1 HETATM 8 C C19 DSA . . . C 3 -1.739 0.748 2.644 1 0 ? C19 DSA 23 A 1 HETATM 9 C C16 DSA . . . C 3 -4.323 0.682 2.162 1 0 ? C16 DSA 23 A 1 HETATM 10 C C6 DSA . . . C 3 -8.568 0.421 3.867 1 0 ? C6 DSA 23 A 1 HETATM 11 C C7 DSA . . . C 3 -7.337 0.374 3.204 1 0 ? C7 DSA 23 A 1 HETATM 12 C C8 DSA . . . C 3 -6.175 0.841 3.867 1 0 ? C8 DSA 23 A 1 HETATM 13 C C11 DSA . . . C 3 -4.027 1.395 4.575 1 0 ? C11 DSA 23 A 1 HETATM 14 C C10 DSA . . . C 3 -4.924 1.737 5.771 1 0 ? C10 DSA 23 A 1 HETATM 15 C C13 DSA . . . C 3 -4.758 0.748 6.948 1 0 ? C13 DSA 23 A 1 HETATM 16 C C9 DSA . . . C 3 -6.225 1.357 5.144 1 0 ? C9 DSA 23 A 1 HETATM 17 C C26 DSA . . . C 3 -0.706 -0.951 -2.617 1 0 ? C26 DSA 23 A 1 HETATM 18 C C27 DSA . . . C 3 2.395 1.423 -2.077 1 0 ? C27 DSA 23 A 1 HETATM 19 C C5 DSA . . . C 3 -8.637 1.025 5.131 1 0 ? C5 DSA 23 A 1 HETATM 20 C C4 DSA . . . C 3 -7.455 1.504 5.764 1 0 ? C4 DSA 23 A 1 HETATM 21 C C3 DSA . . . C 3 -7.865 2.068 7.045 1 0 ? C3 DSA 23 A 1 HETATM 22 C C2 DSA . . . C 3 -9.246 1.884 7.137 1 0 ? C2 DSA 23 A 1 HETATM 23 C C14 DSA . . . C 3 -10.112 2.267 8.247 1 0 ? C14 DSA 23 A 1 HETATM 24 C C28 DSA . . . C 3 3.545 -0.258 2.271 1 0 ? C28 DSA 23 A 1 HETATM 25 C C15 DSA . . . C 3 -10.331 3.53 10.273 1 0 ? C15 DSA 23 A 1 HETATM 26 N N17 DSA . . . C 3 -2.471 0.568 0.52 1 0 ? N17 DSA 23 A 1 HETATM 27 N N12 DSA . . . C 3 -4.856 0.9 3.441 1 0 ? N12 DSA 23 A 1 HETATM 28 N N1 DSA . . . C 3 -9.694 1.258 5.989 1 0 ? N1 DSA 23 A 1 HETATM 29 O O24 DSA . . . C 3 3.031 0.051 0.987 1 0 ? O24 DSA 23 A 1 HETATM 30 O O16 DSA . . . C 3 -5.113 0.478 1.242 1 0 ? O16 DSA 23 A 1 HETATM 31 O O6 DSA . . . C 3 -9.722 -0.029 3.293 1 0 ? O6 DSA 23 A 1 HETATM 32 O O22 DSA . . . C 3 -0.794 0.292 -1.946 1 0 ? O22 DSA 23 A 1 HETATM 33 O O23 DSA . . . C 3 2.025 0.176 -1.523 1 0 ? O23 DSA 23 A 1 HETATM 34 O O15 DSA . . . C 3 -9.504 3.015 9.245 1 0 ? O15 DSA 23 A 1 HETATM 35 O O14 DSA . . . C 3 -11.305 1.97 8.322 1 0 ? O14 DSA 23 A 1 HETATM 36 H H25 DSA . . . C 3 1.166 0.495 2.962 1 0 ? H25 DSA 23 A 1 HETATM 37 H H19 DSA . . . C 3 -1.712 0.847 3.709 1 0 ? H19 DSA 23 A 1 HETATM 38 H H7 DSA . . . C 3 -7.295 -0.04 2.209 1 0 ? H7 DSA 23 A 1 HETATM 39 H H111 DSA . . . C 3 -3.461 2.28 4.279 1 0 ? H111 DSA 23 A 1 HETATM 40 H H112 DSA . . . C 3 -3.371 0.59 4.893 1 0 ? H112 DSA 23 A 1 HETATM 41 H H10 DSA . . . C 3 -4.866 2.781 6.073 1 0 ? H10 DSA 23 A 1 HETATM 42 H H131 DSA . . . C 3 -4.657 -0.257 6.551 1 0 ? H131 DSA 23 A 1 HETATM 43 H H132 DSA . . . C 3 -5.665 0.817 7.531 1 0 ? H132 DSA 23 A 1 HETATM 44 H H261 DSA . . . C 3 -1.262 -0.883 -3.551 1 0 ? H261 DSA 23 A 1 HETATM 45 H H262 DSA . . . C 3 0.329 -1.198 -2.848 1 0 ? H262 DSA 23 A 1 HETATM 46 H H263 DSA . . . C 3 -1.143 -1.74 -2.004 1 0 ? H263 DSA 23 A 1 HETATM 47 H H271 DSA . . . C 3 3.087 1.252 -2.902 1 0 ? H271 DSA 23 A 1 HETATM 48 H H272 DSA . . . C 3 1.516 1.945 -2.456 1 0 ? H272 DSA 23 A 1 HETATM 49 H H273 DSA . . . C 3 2.888 2.039 -1.324 1 0 ? H273 DSA 23 A 1 HETATM 50 H H3 DSA . . . C 3 -7.27 2.527 7.821 1 0 ? H3 DSA 23 A 1 HETATM 51 H H281 DSA . . . C 3 3.428 0.586 2.947 1 0 ? H281 DSA 23 A 1 HETATM 52 H H282 DSA . . . C 3 3.044 -1.135 2.679 1 0 ? H282 DSA 23 A 1 HETATM 53 H H283 DSA . . . C 3 4.608 -0.475 2.178 1 0 ? H283 DSA 23 A 1 HETATM 54 H H151 DSA . . . C 3 -9.717 4.112 10.961 1 0 ? H151 DSA 23 A 1 HETATM 55 H H152 DSA . . . C 3 -11.098 4.182 9.852 1 0 ? H152 DSA 23 A 1 HETATM 56 H H153 DSA . . . C 3 -10.802 2.716 10.826 1 0 ? H153 DSA 23 A 1 HETATM 57 H H17 DSA . . . C 3 -3.135 0.519 -0.239 1 0 ? H17 DSA 23 A 1 HETATM 58 H H1 DSA . . . C 3 -10.663 1.024 5.836 1 0 ? H1 DSA 23 A 1 HETATM 59 H H6 DSA . . . C 3 -9.583 -0.379 2.411 1 0 ? H6 DSA 23 A 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 5805 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 59 #