data_1DSR # _model_server_result.job_id Z5WaOclMEVhyoz54QEVUrA _model_server_result.datetime_utc '2025-01-02 17:07:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1dsr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":0}' # _entry.id 1DSR # _exptl.entry_id 1DSR _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 154.206 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2Z,4E)-7-methylocta-2,4-dienoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1DSR _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DSR _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 MAN _pdbx_entity_branch_link.comp_id_2 MAN _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O2 _pdbx_entity_branch_link.leaving_atom_id_2 HO2 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B MAN 1 B 1 MAN A 18 MAN 2 n B MAN 2 B 2 MAN A 19 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C1 FA7 . A FA7 0 1_555 A N ASN 1 A ASN 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale2 A C ASN 1 A ASN 1 1_555 A N AHB 2 A AHB 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale3 A C AHB 2 A AHB 2 1_555 A N GHP 3 A GHP 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale4 A OB AHB 2 A AHB 2 1_555 A C CHP 17 A CHP 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.397 ? covale ? covale5 A C GHP 3 A GHP 3 1_555 A N ORD 4 A ORD 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale6 A C ORD 4 A ORD 4 1_555 A N 2TL 5 A 2TL 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale7 A C 2TL 5 A 2TL 5 1_555 A N D4P 6 A D4P 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale8 A C D4P 6 A D4P 6 1_555 A N GHP 7 A GHP 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? covale ? covale9 A C GHP 7 A GHP 7 1_555 A N ALO 8 A ALO 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale10 A C ALO 8 A ALO 8 1_555 A N PHE 9 A PHE 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale11 A C PHE 9 A PHE 9 1_555 A N ORD 10 A ORD 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale12 A C ORD 10 A ORD 10 1_555 A N D4P 11 A D4P 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale13 A C D4P 11 A D4P 11 1_555 A N 2TL 12 A 2TL 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale14 A O4 D4P 11 A D4P 11 1_555 B C1 MAN . B MAN 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale15 A C 2TL 12 A 2TL 12 1_555 A N D4P 13 A D4P 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale16 A C D4P 13 A D4P 13 1_555 A N GLY 14 A GLY 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? covale ? covale17 A C LEU 15 A LEU 15 1_555 A N DAL 16 A DAL 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale18 A C DAL 16 A DAL 16 1_555 A N CHP 17 A CHP 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale19 B O2 MAN . B MAN 1 1_555 B C1 MAN . B MAN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? # _chem_comp.formula 'C9 H14 O2' _chem_comp.formula_weight 154.206 _chem_comp.id FA7 _chem_comp.mon_nstd_flag . _chem_comp.name '(2Z,4E)-7-methylocta-2,4-dienoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O FA7 doub 120 n n C1 C2 FA7 sing 121 n n C1 OXT FA7 sing 122 n n C2 C3 FA7 doub 123 z n C3 C4 FA7 sing 124 n n C4 C5 FA7 doub 125 n n C5 C6 FA7 sing 126 n n C6 C7 FA7 sing 127 e n C7 C8 FA7 sing 128 n n C7 C9 FA7 sing 129 n n C2 H2 FA7 sing 130 n n C3 H3 FA7 sing 131 n n C4 H4 FA7 sing 132 n n C5 H5 FA7 sing 133 n n C6 H61 FA7 sing 134 n n C6 H62 FA7 sing 135 n n C7 H7 FA7 sing 136 n n C8 H81 FA7 sing 137 n n C8 H82 FA7 sing 138 n n C8 H83 FA7 sing 139 n n C9 H91 FA7 sing 140 n n C9 H92 FA7 sing 141 n n C9 H93 FA7 sing 142 n n OXT HXT FA7 sing 143 n n # _atom_sites.entry_id 1DSR _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 3 _pdbx_nonpoly_scheme.mon_id FA7 _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 0 _pdbx_nonpoly_scheme.auth_seq_num 0 _pdbx_nonpoly_scheme.pdb_mon_id FA7 _pdbx_nonpoly_scheme.auth_mon_id FA7 _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 FA7 . . . C 3 14.111 24.596 27.066 1 0 ? C1 FA7 0 A 1 HETATM 2 O O FA7 . . . C 3 14.499 25.28 26.117 1 0 ? O FA7 0 A 1 HETATM 3 C C2 FA7 . . . C 3 13.386 25.211 28.25 1 0 ? C2 FA7 0 A 1 HETATM 4 C C3 FA7 . . . C 3 13.561 26.407 28.841 1 0 ? C3 FA7 0 A 1 HETATM 5 C C4 FA7 . . . C 3 14.477 27.333 28.521 1 0 ? C4 FA7 0 A 1 HETATM 6 C C5 FA7 . . . C 3 14.599 28.53 29.111 1 0 ? C5 FA7 0 A 1 HETATM 7 C C6 FA7 . . . C 3 15.66 29.532 28.704 1 0 ? C6 FA7 0 A 1 HETATM 8 C C7 FA7 . . . C 3 16.899 29.44 29.613 1 0 ? C7 FA7 0 A 1 HETATM 9 C C8 FA7 . . . C 3 18.045 30.334 29.119 1 0 ? C8 FA7 0 A 1 HETATM 10 C C9 FA7 . . . C 3 16.52 29.826 31.054 1 0 ? C9 FA7 0 A 1 HETATM 11 H H3 FA7 . . . C 3 12.876 26.629 29.662 1 0 ? H3 FA7 0 A 1 HETATM 12 H H4 FA7 . . . C 3 15.181 27.115 27.723 1 0 ? H4 FA7 0 A 1 HETATM 13 H H5 FA7 . . . C 3 13.938 28.812 29.933 1 0 ? H5 FA7 0 A 1 HETATM 14 H H61 FA7 . . . C 3 15.95 29.388 27.644 1 0 ? H61 FA7 0 A 1 HETATM 15 H H62 FA7 . . . C 3 15.235 30.553 28.746 1 0 ? H62 FA7 0 A 1 HETATM 16 H H7 FA7 . . . C 3 17.293 28.425 29.667 1 0 ? H7 FA7 0 A 1 HETATM 17 H H81 FA7 . . . C 3 17.745 31.397 29.064 1 0 ? H81 FA7 0 A 1 HETATM 18 H H82 FA7 . . . C 3 18.392 30.035 28.111 1 0 ? H82 FA7 0 A 1 HETATM 19 H H83 FA7 . . . C 3 18.92 30.276 29.793 1 0 ? H83 FA7 0 A 1 HETATM 20 H H91 FA7 . . . C 3 17.401 29.759 31.692 1 0 ? H91 FA7 0 A 1 HETATM 21 H H92 FA7 . . . C 3 16.138 30.847 31.069 1 0 ? H92 FA7 0 A 1 HETATM 22 H H93 FA7 . . . C 3 15.752 29.146 31.423 1 0 ? H93 FA7 0 A 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 1968 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 22 #