data_1DT1 # _model_server_result.job_id 6uxpejngaayYhRxwjZZ7Mw _model_server_result.datetime_utc '2024-11-22 02:57:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1dt1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":200}' # _entry.id 1DT1 # _exptl.entry_id 1DT1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.503 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1DT1 _cell.length_a 86.9 _cell.length_b 86.9 _cell.length_c 31.85 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DT1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 9 A CYS 11 1_555 B CAB HEC . A HEC 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.813 ? covale ? covale2 A SG CYS 12 A CYS 14 1_555 B CAC HEC . A HEC 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.843 ? metalc ? metalc1 A NE2 HIS 13 A HIS 15 1_555 B FE HEC . A HEC 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc2 A SD MET 67 A MET 69 1_555 B FE HEC . A HEC 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HEC sing 129 n n FE NB HEC sing 130 n n FE NC HEC sing 131 n n FE ND HEC sing 132 n n CHA C1A HEC doub 133 n n CHA C4D HEC sing 134 n n CHA HHA HEC sing 135 n n CHB C4A HEC doub 136 n n CHB C1B HEC sing 137 n n CHB HHB HEC sing 138 n n CHC C4B HEC doub 139 n n CHC C1C HEC sing 140 n n CHC HHC HEC sing 141 n n CHD C4C HEC doub 142 n n CHD C1D HEC sing 143 n n CHD HHD HEC sing 144 n n NA C1A HEC sing 145 n y NA C4A HEC sing 146 n y C1A C2A HEC sing 147 n y C2A C3A HEC doub 148 n y C2A CAA HEC sing 149 n n C3A C4A HEC sing 150 n y C3A CMA HEC sing 151 n n CMA HMA1 HEC sing 152 n n CMA HMA2 HEC sing 153 n n CMA HMA3 HEC sing 154 n n CAA CBA HEC sing 155 n n CAA HAA1 HEC sing 156 n n CAA HAA2 HEC sing 157 n n CBA CGA HEC sing 158 n n CBA HBA1 HEC sing 159 n n CBA HBA2 HEC sing 160 n n CGA O1A HEC doub 161 n n CGA O2A HEC sing 162 n n O2A H2A HEC sing 163 n n NB C1B HEC sing 164 n y NB C4B HEC sing 165 n y C1B C2B HEC doub 166 n y C2B C3B HEC sing 167 n y C2B CMB HEC sing 168 n n C3B C4B HEC sing 169 n y C3B CAB HEC doub 170 e n CMB HMB1 HEC sing 171 n n CMB HMB2 HEC sing 172 n n CMB HMB3 HEC sing 173 n n CAB CBB HEC sing 174 n n CAB HAB HEC sing 175 n n CBB HBB1 HEC sing 176 n n CBB HBB2 HEC sing 177 n n CBB HBB3 HEC sing 178 n n NC C1C HEC sing 179 n y NC C4C HEC sing 180 n y C1C C2C HEC doub 181 n y C2C C3C HEC sing 182 n y C2C CMC HEC sing 183 n n C3C C4C HEC sing 184 n y C3C CAC HEC doub 185 e n CMC HMC1 HEC sing 186 n n CMC HMC2 HEC sing 187 n n CMC HMC3 HEC sing 188 n n CAC CBC HEC sing 189 n n CAC HAC HEC sing 190 n n CBC HBC1 HEC sing 191 n n CBC HBC2 HEC sing 192 n n CBC HBC3 HEC sing 193 n n ND C1D HEC sing 194 n y ND C4D HEC sing 195 n y C1D C2D HEC doub 196 n y C2D C3D HEC sing 197 n y C2D CMD HEC sing 198 n n C3D C4D HEC doub 199 n y C3D CAD HEC sing 200 n n CMD HMD1 HEC sing 201 n n CMD HMD2 HEC sing 202 n n CMD HMD3 HEC sing 203 n n CAD CBD HEC sing 204 n n CAD HAD1 HEC sing 205 n n CAD HAD2 HEC sing 206 n n CBD CGD HEC sing 207 n n CBD HBD1 HEC sing 208 n n CBD HBD2 HEC sing 209 n n CGD O1D HEC doub 210 n n CGD O2D HEC sing 211 n n O2D H2D HEC sing 212 n n # _atom_sites.entry_id 1DT1 _atom_sites.fract_transf_matrix[1][1] 0.011507 _atom_sites.fract_transf_matrix[1][2] 0.006644 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013288 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.031397 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEC A 1 200 200 HEC HEM . C 3 HOH A 1 2001 2001 HOH HOH . C 3 HOH A 2 2002 2002 HOH HOH . C 3 HOH A 3 2003 2003 HOH HOH . C 3 HOH A 4 2004 2004 HOH HOH . C 3 HOH A 5 2005 2005 HOH HOH . C 3 HOH A 6 2006 2006 HOH HOH . C 3 HOH A 7 2007 2007 HOH HOH . C 3 HOH A 8 2008 2008 HOH HOH . C 3 HOH A 9 2009 2009 HOH HOH . C 3 HOH A 10 2010 2010 HOH HOH . C 3 HOH A 11 2011 2011 HOH HOH . C 3 HOH A 12 2012 2012 HOH HOH . C 3 HOH A 13 2013 2013 HOH HOH . C 3 HOH A 14 2014 2014 HOH HOH . C 3 HOH A 15 2015 2015 HOH HOH . C 3 HOH A 16 2016 2016 HOH HOH . C 3 HOH A 17 2017 2017 HOH HOH . C 3 HOH A 18 2018 2018 HOH HOH . C 3 HOH A 19 2019 2019 HOH HOH . C 3 HOH A 20 2020 2020 HOH HOH . C 3 HOH A 21 2021 2021 HOH HOH . C 3 HOH A 22 2022 2022 HOH HOH . C 3 HOH A 23 2023 2023 HOH HOH . C 3 HOH A 24 2024 2024 HOH HOH . C 3 HOH A 25 2025 2025 HOH HOH . C 3 HOH A 26 2026 2026 HOH HOH . C 3 HOH A 27 2027 2027 HOH HOH . C 3 HOH A 28 2028 2028 HOH HOH . C 3 HOH A 29 2029 2029 HOH HOH . C 3 HOH A 30 2030 2030 HOH HOH . C 3 HOH A 31 2031 2031 HOH HOH . C 3 HOH A 32 2032 2032 HOH HOH . C 3 HOH A 33 2033 2033 HOH HOH . C 3 HOH A 34 2034 2034 HOH HOH . C 3 HOH A 35 2035 2035 HOH HOH . C 3 HOH A 36 2036 2036 HOH HOH . C 3 HOH A 37 2037 2037 HOH HOH . C 3 HOH A 38 2038 2038 HOH HOH . C 3 HOH A 39 2039 2039 HOH HOH . C 3 HOH A 40 2040 2040 HOH HOH . C 3 HOH A 41 2041 2041 HOH HOH . C 3 HOH A 42 2042 2042 HOH HOH . C 3 HOH A 43 2043 2043 HOH HOH . C 3 HOH A 44 2044 2044 HOH HOH . C 3 HOH A 45 2045 2045 HOH HOH . C 3 HOH A 46 2046 2046 HOH HOH . C 3 HOH A 47 2047 2047 HOH HOH . C 3 HOH A 48 2048 2048 HOH HOH . C 3 HOH A 49 2049 2049 HOH HOH . C 3 HOH A 50 2050 2050 HOH HOH . C 3 HOH A 51 2051 2051 HOH HOH . C 3 HOH A 52 2052 2052 HOH HOH . C 3 HOH A 53 2053 2053 HOH HOH . C 3 HOH A 54 2054 2054 HOH HOH . C 3 HOH A 55 2055 2055 HOH HOH . C 3 HOH A 56 2056 2056 HOH HOH . C 3 HOH A 57 2057 2057 HOH HOH . C 3 HOH A 58 2058 2058 HOH HOH . C 3 HOH A 59 2059 2059 HOH HOH . C 3 HOH A 60 2060 2060 HOH HOH . C 3 HOH A 61 2061 2061 HOH HOH . C 3 HOH A 62 2062 2062 HOH HOH . C 3 HOH A 63 2063 2063 HOH HOH . C 3 HOH A 64 2064 2064 HOH HOH . C 3 HOH A 65 2065 2065 HOH HOH . C 3 HOH A 66 2066 2066 HOH HOH . C 3 HOH A 67 2067 2067 HOH HOH . C 3 HOH A 68 2068 2068 HOH HOH . C 3 HOH A 69 2069 2069 HOH HOH . C 3 HOH A 70 2070 2070 HOH HOH . C 3 HOH A 71 2071 2071 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . B 2 25.102 24.442 0.198 1 9.75 ? FE HEC 200 A 1 HETATM 2 C CHA HEC . . . B 2 21.75 24.736 -0.153 1 9.29 ? CHA HEC 200 A 1 HETATM 3 C CHB HEC . . . B 2 25.3 22.504 -2.497 1 6.71 ? CHB HEC 200 A 1 HETATM 4 C CHC HEC . . . B 2 28.469 24.854 0.218 1 6.98 ? CHC HEC 200 A 1 HETATM 5 C CHD HEC . . . B 2 24.914 25.865 3.282 1 8.34 ? CHD HEC 200 A 1 HETATM 6 N NA HEC . . . B 2 23.732 23.774 -1.175 1 9.37 ? NA HEC 200 A 1 HETATM 7 C C1A HEC . . . B 2 22.408 23.984 -1.171 1 12.44 ? C1A HEC 200 A 1 HETATM 8 C C2A HEC . . . B 2 21.844 23.382 -2.281 1 5.66 ? C2A HEC 200 A 1 HETATM 9 C C3A HEC . . . B 2 22.88 22.77 -2.985 1 4.34 ? C3A HEC 200 A 1 HETATM 10 C C4A HEC . . . B 2 24.024 23.056 -2.261 1 8.26 ? C4A HEC 200 A 1 HETATM 11 C CMA HEC . . . B 2 22.844 21.897 -4.228 1 2.81 ? CMA HEC 200 A 1 HETATM 12 C CAA HEC . . . B 2 20.355 23.406 -2.654 1 7.62 ? CAA HEC 200 A 1 HETATM 13 C CBA HEC . . . B 2 19.509 22.298 -2.083 1 6.26 ? CBA HEC 200 A 1 HETATM 14 C CGA HEC . . . B 2 18.003 22.494 -2.329 1 9.66 ? CGA HEC 200 A 1 HETATM 15 O O1A HEC . . . B 2 17.197 21.656 -1.919 1 11.75 ? O1A HEC 200 A 1 HETATM 16 O O2A HEC . . . B 2 17.595 23.472 -2.945 1 7 ? O2A HEC 200 A 1 HETATM 17 N NB HEC . . . B 2 26.649 23.813 -0.98 1 11.68 ? NB HEC 200 A 1 HETATM 18 C C1B HEC . . . B 2 26.531 23.014 -2.039 1 13.14 ? C1B HEC 200 A 1 HETATM 19 C C2B HEC . . . B 2 27.778 22.761 -2.613 1 4.85 ? C2B HEC 200 A 1 HETATM 20 C C3B HEC . . . B 2 28.68 23.489 -1.851 1 3.05 ? C3B HEC 200 A 1 HETATM 21 C C4B HEC . . . B 2 27.949 24.086 -0.836 1 8.63 ? C4B HEC 200 A 1 HETATM 22 C CMB HEC . . . B 2 27.982 21.805 -3.777 1 4.79 ? CMB HEC 200 A 1 HETATM 23 C CAB HEC . . . B 2 30.073 23.58 -2.048 1 8.91 ? CAB HEC 200 A 1 HETATM 24 C CBB HEC . . . B 2 30.58 23.831 -3.402 1 7.72 ? CBB HEC 200 A 1 HETATM 25 N NC HEC . . . B 2 26.449 25.236 1.549 1 9.84 ? NC HEC 200 A 1 HETATM 26 C C1C HEC . . . B 2 27.784 25.23 1.403 1 12.44 ? C1C HEC 200 A 1 HETATM 27 C C2C HEC . . . B 2 28.436 25.659 2.562 1 11.39 ? C2C HEC 200 A 1 HETATM 28 C C3C HEC . . . B 2 27.413 25.905 3.489 1 10.71 ? C3C HEC 200 A 1 HETATM 29 C C4C HEC . . . B 2 26.22 25.657 2.817 1 12.71 ? C4C HEC 200 A 1 HETATM 30 C CMC HEC . . . B 2 29.958 25.848 2.691 1 8.27 ? CMC HEC 200 A 1 HETATM 31 C CAC HEC . . . B 2 27.584 26.276 4.843 1 14.57 ? CAC HEC 200 A 1 HETATM 32 C CBC HEC . . . B 2 28.294 27.516 5.22 1 10.37 ? CBC HEC 200 A 1 HETATM 33 N ND HEC . . . B 2 23.582 25.21 1.377 1 13.64 ? ND HEC 200 A 1 HETATM 34 C C1D HEC . . . B 2 23.704 25.716 2.61 1 10.13 ? C1D HEC 200 A 1 HETATM 35 C C2D HEC . . . B 2 22.465 26.038 3.137 1 13.42 ? C2D HEC 200 A 1 HETATM 36 C C3D HEC . . . B 2 21.542 25.755 2.123 1 13.64 ? C3D HEC 200 A 1 HETATM 37 C C4D HEC . . . B 2 22.274 25.193 1.073 1 9.54 ? C4D HEC 200 A 1 HETATM 38 C CMD HEC . . . B 2 22.133 26.639 4.493 1 10.6 ? CMD HEC 200 A 1 HETATM 39 C CAD HEC . . . B 2 20.035 26.035 2.226 1 12.91 ? CAD HEC 200 A 1 HETATM 40 C CBD HEC . . . B 2 19.701 27.546 2.149 1 11.28 ? CBD HEC 200 A 1 HETATM 41 C CGD HEC . . . B 2 18.235 27.854 2.496 1 17.96 ? CGD HEC 200 A 1 HETATM 42 O O1D HEC . . . B 2 17.566 28.55 1.751 1 11.43 ? O1D HEC 200 A 1 HETATM 43 O O2D HEC . . . B 2 17.794 27.365 3.524 1 18.86 ? O2D HEC 200 A 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 233 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 43 #