data_1DTH # _model_server_result.job_id nKhsQIkBze-Urz10K3be1A _model_server_result.datetime_utc '2024-11-07 08:46:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1dth # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":903}' # _entry.id 1DTH # _exptl.entry_id 1DTH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1DTH _cell.length_a 97.21 _cell.length_b 97.21 _cell.length_c 87.91 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DTH _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 118 A CYS 117 1_555 A SG CYS 198 A CYS 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf2 A SG CYS 158 A CYS 157 1_555 A SG CYS 165 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 B SG CYS 118 B CYS 117 1_555 B SG CYS 198 B CYS 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf4 B SG CYS 158 B CYS 157 1_555 B SG CYS 165 B CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc1 A OE1 GLU 10 A GLU 9 1_555 D CA CA . A CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc2 A OD1 ASP 94 A ASP 93 1_555 D CA CA . A CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.518 ? metalc ? metalc3 A OD2 ASP 94 A ASP 93 1_555 D CA CA . A CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? metalc ? metalc4 A NE2 HIS 143 A HIS 142 1_555 C ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? metalc ? metalc5 A NE2 HIS 147 A HIS 146 1_555 C ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc6 A NE2 HIS 153 A HIS 152 1_555 C ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc7 A O CYS 198 A CYS 197 1_555 D CA CA . A CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc8 A OD1 ASN 201 A ASN 200 1_555 D CA CA . A CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? metalc ? metalc9 C ZN ZN . A ZN 901 1_555 E O4 BAT . A BAT 972 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.941 ? metalc ? metalc10 B OE1 GLU 10 B GLU 9 1_555 G CA CA . B CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc11 B OD1 ASP 94 B ASP 93 1_555 G CA CA . B CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? metalc ? metalc12 B OD2 ASP 94 B ASP 93 1_555 G CA CA . B CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? metalc ? metalc13 B NE2 HIS 143 B HIS 142 1_555 F ZN ZN . B ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.969 ? metalc ? metalc14 B NE2 HIS 147 B HIS 146 1_555 F ZN ZN . B ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc15 B NE2 HIS 153 B HIS 152 1_555 F ZN ZN . B ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc16 B O CYS 198 B CYS 197 1_555 G CA CA . B CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? metalc ? metalc17 B OD1 ASN 201 B ASN 200 1_555 G CA CA . B CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? metalc ? metalc18 B ND2 ASN 201 B ASN 200 1_555 G CA CA . B CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.831 ? metalc ? metalc19 F ZN ZN . B ZN 902 1_555 H O4 BAT . B BAT 973 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1DTH _atom_sites.fract_transf_matrix[1][1] 0.010287 _atom_sites.fract_transf_matrix[1][2] 0.005939 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011878 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011375 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 901 901 ZN ZN . D 3 CA A 1 903 903 CA CA . E 4 BAT A 1 972 972 BAT DSX . F 2 ZN B 1 902 902 ZN ZN . G 3 CA B 1 904 904 CA CA . H 4 BAT B 1 973 973 BAT DSX . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 3.744 _atom_site.Cartn_y 48.912 _atom_site.Cartn_z 11.943 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 6.54 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 903 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #