data_1DTI # _model_server_result.job_id 6rvgHZPJHMSJmicjCPhIqg _model_server_result.datetime_utc '2024-11-22 09:30:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1dti # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":154}' # _entry.id 1DTI # _exptl.entry_id 1DTI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1DTI _cell.length_a 49.163 _cell.length_b 40.002 _cell.length_c 80.011 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DTI _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 94 A HIS 93 1_555 B FE HEM . A HEM 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc2 B FE HEM . A HEM 154 1_555 C O HOH . A HOH 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 116 n n CHA C4D HEM doub 117 n n CHA HHA HEM sing 118 n n CHB C4A HEM sing 119 n n CHB C1B HEM doub 120 n n CHB HHB HEM sing 121 n n CHC C4B HEM sing 122 n n CHC C1C HEM doub 123 n n CHC HHC HEM sing 124 n n CHD C4C HEM doub 125 n n CHD C1D HEM sing 126 n n CHD HHD HEM sing 127 n n C1A C2A HEM doub 128 n y C1A NA HEM sing 129 n y C2A C3A HEM sing 130 n y C2A CAA HEM sing 131 n n C3A C4A HEM doub 132 n y C3A CMA HEM sing 133 n n C4A NA HEM sing 134 n y CMA HMA HEM sing 135 n n CMA HMAA HEM sing 136 n n CMA HMAB HEM sing 137 n n CAA CBA HEM sing 138 n n CAA HAA HEM sing 139 n n CAA HAAA HEM sing 140 n n CBA CGA HEM sing 141 n n CBA HBA HEM sing 142 n n CBA HBAA HEM sing 143 n n CGA O1A HEM doub 144 n n CGA O2A HEM sing 145 n n C1B C2B HEM sing 146 n n C1B NB HEM sing 147 n n C2B C3B HEM doub 148 n n C2B CMB HEM sing 149 n n C3B C4B HEM sing 150 n n C3B CAB HEM sing 151 n n C4B NB HEM doub 152 n n CMB HMB HEM sing 153 n n CMB HMBA HEM sing 154 n n CMB HMBB HEM sing 155 n n CAB CBB HEM doub 156 n n CAB HAB HEM sing 157 n n CBB HBB HEM sing 158 n n CBB HBBA HEM sing 159 n n C1C C2C HEM sing 160 n y C1C NC HEM sing 161 n y C2C C3C HEM doub 162 n y C2C CMC HEM sing 163 n n C3C C4C HEM sing 164 n y C3C CAC HEM sing 165 n n C4C NC HEM sing 166 n y CMC HMC HEM sing 167 n n CMC HMCA HEM sing 168 n n CMC HMCB HEM sing 169 n n CAC CBC HEM doub 170 n n CAC HAC HEM sing 171 n n CBC HBC HEM sing 172 n n CBC HBCA HEM sing 173 n n C1D C2D HEM sing 174 n n C1D ND HEM doub 175 n n C2D C3D HEM doub 176 n n C2D CMD HEM sing 177 n n C3D C4D HEM sing 178 n n C3D CAD HEM sing 179 n n C4D ND HEM sing 180 n n CMD HMD HEM sing 181 n n CMD HMDA HEM sing 182 n n CMD HMDB HEM sing 183 n n CAD CBD HEM sing 184 n n CAD HAD HEM sing 185 n n CAD HADA HEM sing 186 n n CBD CGD HEM sing 187 n n CBD HBD HEM sing 188 n n CBD HBDA HEM sing 189 n n CGD O1D HEM doub 190 n n CGD O2D HEM sing 191 n n O2A H2A HEM sing 192 n n O2D H2D HEM sing 193 n n FE NA HEM sing 194 n n FE NB HEM sing 195 n n FE NC HEM sing 196 n n FE ND HEM sing 197 n n # _atom_sites.entry_id 1DTI _atom_sites.fract_transf_matrix[1][1] 0.020341 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024999 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012498 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 154 154 HEM HEM . C 3 HOH A 1 155 155 HOH MTO . C 3 HOH A 2 200 200 HOH HOH . C 3 HOH A 3 201 201 HOH HOH . C 3 HOH A 4 202 202 HOH HOH . C 3 HOH A 5 203 203 HOH HOH . C 3 HOH A 6 204 204 HOH HOH . C 3 HOH A 7 205 205 HOH HOH . C 3 HOH A 8 206 206 HOH HOH . C 3 HOH A 9 207 207 HOH HOH . C 3 HOH A 10 208 208 HOH HOH . C 3 HOH A 11 209 209 HOH HOH . C 3 HOH A 12 210 210 HOH HOH . C 3 HOH A 13 211 211 HOH HOH . C 3 HOH A 14 212 212 HOH HOH . C 3 HOH A 15 213 213 HOH HOH . C 3 HOH A 16 214 214 HOH HOH . C 3 HOH A 17 215 215 HOH HOH . C 3 HOH A 18 216 216 HOH HOH . C 3 HOH A 19 217 217 HOH HOH . C 3 HOH A 20 218 218 HOH HOH . C 3 HOH A 21 219 219 HOH HOH . C 3 HOH A 22 220 220 HOH HOH . C 3 HOH A 23 221 221 HOH HOH . C 3 HOH A 24 222 222 HOH HOH . C 3 HOH A 25 223 223 HOH HOH . C 3 HOH A 26 224 224 HOH HOH . C 3 HOH A 27 225 225 HOH HOH . C 3 HOH A 28 226 226 HOH HOH . C 3 HOH A 29 227 227 HOH HOH . C 3 HOH A 30 228 228 HOH HOH . C 3 HOH A 31 229 229 HOH HOH . C 3 HOH A 32 230 230 HOH HOH . C 3 HOH A 33 231 231 HOH HOH . C 3 HOH A 34 232 232 HOH HOH . C 3 HOH A 35 233 233 HOH HOH . C 3 HOH A 36 234 234 HOH HOH . C 3 HOH A 37 235 235 HOH HOH . C 3 HOH A 38 236 236 HOH HOH . C 3 HOH A 39 237 237 HOH HOH . C 3 HOH A 40 238 238 HOH HOH . C 3 HOH A 41 239 239 HOH HOH . C 3 HOH A 42 240 240 HOH HOH . C 3 HOH A 43 241 241 HOH HOH . C 3 HOH A 44 242 242 HOH HOH . C 3 HOH A 45 243 243 HOH HOH . C 3 HOH A 46 244 244 HOH HOH . C 3 HOH A 47 245 245 HOH HOH . C 3 HOH A 48 246 246 HOH HOH . C 3 HOH A 49 247 247 HOH HOH . C 3 HOH A 50 248 248 HOH HOH . C 3 HOH A 51 249 249 HOH HOH . C 3 HOH A 52 250 250 HOH HOH . C 3 HOH A 53 251 251 HOH HOH . C 3 HOH A 54 252 252 HOH HOH . C 3 HOH A 55 253 253 HOH HOH . C 3 HOH A 56 254 254 HOH HOH . C 3 HOH A 57 255 255 HOH HOH . C 3 HOH A 58 256 256 HOH HOH . C 3 HOH A 59 257 257 HOH HOH . C 3 HOH A 60 258 258 HOH HOH . C 3 HOH A 61 259 259 HOH HOH . C 3 HOH A 62 260 260 HOH HOH . C 3 HOH A 63 261 261 HOH HOH . C 3 HOH A 64 262 262 HOH HOH . C 3 HOH A 65 263 263 HOH HOH . C 3 HOH A 66 264 264 HOH HOH . C 3 HOH A 67 265 265 HOH HOH . C 3 HOH A 68 266 266 HOH HOH . C 3 HOH A 69 267 267 HOH HOH . C 3 HOH A 70 268 268 HOH HOH . C 3 HOH A 71 269 269 HOH HOH . C 3 HOH A 72 270 270 HOH HOH . C 3 HOH A 73 271 271 HOH HOH . C 3 HOH A 74 272 272 HOH HOH . C 3 HOH A 75 273 273 HOH HOH . C 3 HOH A 76 274 274 HOH HOH . C 3 HOH A 77 275 275 HOH HOH . C 3 HOH A 78 276 276 HOH HOH . C 3 HOH A 79 277 277 HOH HOH . C 3 HOH A 80 278 278 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 21.137 24.08 29.128 1 14.49 ? CHA HEM 154 A 1 HETATM 2 C CHB HEM . . . B 2 19.032 25.49 25.174 1 10.05 ? CHB HEM 154 A 1 HETATM 3 C CHC HEM . . . B 2 14.881 25.503 27.392 1 10.95 ? CHC HEM 154 A 1 HETATM 4 C CHD HEM . . . B 2 16.996 24.094 31.34 1 16.33 ? CHD HEM 154 A 1 HETATM 5 C C1A HEM . . . B 2 20.997 24.519 27.808 1 12.05 ? C1A HEM 154 A 1 HETATM 6 C C2A HEM . . . B 2 22.067 24.652 26.845 1 17.33 ? C2A HEM 154 A 1 HETATM 7 C C3A HEM . . . B 2 21.467 25.068 25.713 1 18 ? C3A HEM 154 A 1 HETATM 8 C C4A HEM . . . B 2 20.057 25.134 26.052 1 11.29 ? C4A HEM 154 A 1 HETATM 9 C CMA HEM . . . B 2 22.056 25.418 24.364 1 16.7 ? CMA HEM 154 A 1 HETATM 10 C CAA HEM . . . B 2 23.538 24.354 27.106 1 24.3 ? CAA HEM 154 A 1 HETATM 11 C CBA HEM . . . B 2 24.014 22.909 26.922 1 34.55 ? CBA HEM 154 A 1 HETATM 12 C CGA HEM . . . B 2 22.879 21.938 26.615 1 45.57 ? CGA HEM 154 A 1 HETATM 13 O O1A HEM . . . B 2 22.569 21.822 25.409 1 67.9 ? O1A HEM 154 A 1 HETATM 14 O O2A HEM . . . B 2 22.363 21.375 27.601 1 62.55 ? O2A HEM 154 A 1 HETATM 15 C C1B HEM . . . B 2 17.662 25.677 25.389 1 13.61 ? C1B HEM 154 A 1 HETATM 16 C C2B HEM . . . B 2 16.721 26.152 24.399 1 18.29 ? C2B HEM 154 A 1 HETATM 17 C C3B HEM . . . B 2 15.517 26.132 25.022 1 15.21 ? C3B HEM 154 A 1 HETATM 18 C C4B HEM . . . B 2 15.823 25.67 26.37 1 12.54 ? C4B HEM 154 A 1 HETATM 19 C CMB HEM . . . B 2 17.066 26.536 22.973 1 13.99 ? CMB HEM 154 A 1 HETATM 20 C CAB HEM . . . B 2 14.174 26.404 24.664 1 17.76 ? CAB HEM 154 A 1 HETATM 21 C CBB HEM . . . B 2 13.816 27.386 23.665 1 16.34 ? CBB HEM 154 A 1 HETATM 22 C C1C HEM . . . B 2 15.04 25.153 28.737 1 15.54 ? C1C HEM 154 A 1 HETATM 23 C C2C HEM . . . B 2 13.997 25.18 29.747 1 16.64 ? C2C HEM 154 A 1 HETATM 24 C C3C HEM . . . B 2 14.607 24.803 30.893 1 16.03 ? C3C HEM 154 A 1 HETATM 25 C C4C HEM . . . B 2 15.982 24.542 30.493 1 16.36 ? C4C HEM 154 A 1 HETATM 26 C CMC HEM . . . B 2 12.565 25.617 29.503 1 14.45 ? CMC HEM 154 A 1 HETATM 27 C CAC HEM . . . B 2 14.274 24.637 32.269 1 18.4 ? CAC HEM 154 A 1 HETATM 28 C CBC HEM . . . B 2 13.069 25.127 32.864 1 22.21 ? CBC HEM 154 A 1 HETATM 29 C C1D HEM . . . B 2 18.363 23.917 31.135 1 16.22 ? C1D HEM 154 A 1 HETATM 30 C C2D HEM . . . B 2 19.317 23.482 32.139 1 23.38 ? C2D HEM 154 A 1 HETATM 31 C C3D HEM . . . B 2 20.508 23.516 31.516 1 21.65 ? C3D HEM 154 A 1 HETATM 32 C C4D HEM . . . B 2 20.207 23.9 30.151 1 15.57 ? C4D HEM 154 A 1 HETATM 33 C CMD HEM . . . B 2 18.964 23.107 33.571 1 29.04 ? CMD HEM 154 A 1 HETATM 34 C CAD HEM . . . B 2 21.915 23.333 32.089 1 26.19 ? CAD HEM 154 A 1 HETATM 35 C CBD HEM . . . B 2 22.66 24.615 32.473 1 29.61 ? CBD HEM 154 A 1 HETATM 36 C CGD HEM . . . B 2 23.882 24.465 33.342 1 43.76 ? CGD HEM 154 A 1 HETATM 37 O O1D HEM . . . B 2 23.694 24.184 34.547 1 51.65 ? O1D HEM 154 A 1 HETATM 38 O O2D HEM . . . B 2 24.994 24.668 32.788 1 54.7 ? O2D HEM 154 A 1 HETATM 39 N NA HEM . . . B 2 19.726 24.846 27.364 1 15.78 ? NA HEM 154 A 1 HETATM 40 N NB HEM . . . B 2 17.148 25.414 26.646 1 14.06 ? NB HEM 154 A 1 HETATM 41 N NC HEM . . . B 2 16.296 24.757 29.162 1 17.97 ? NC HEM 154 A 1 HETATM 42 N ND HEM . . . B 2 18.875 24.153 29.873 1 16.42 ? ND HEM 154 A 1 HETATM 43 FE FE HEM . . . B 2 18.014 24.719 28.252 1 17.44 ? FE HEM 154 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 238 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 43 #