data_1DTL # _model_server_result.job_id P664Yx1bVmm17qf5e2mf_Q _model_server_result.datetime_utc '2024-12-21 13:04:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1dtl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":204}' # _entry.id 1DTL # _exptl.entry_id 1DTL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 366.54 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1-ISOBUTOXY-2-PYRROLIDINO-3[N-BENZYLANILINO] PROPANE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1DTL _cell.length_a 36.27 _cell.length_b 62.04 _cell.length_c 62.04 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DTL _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 65 A ASP 65 1_555 B CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc2 A OD1 ASP 67 A ASP 67 1_555 B CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc3 A OG SER 69 A SER 69 1_555 B CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc4 A O THR 71 A THR 71 1_555 B CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc5 A OE1 GLU 76 A GLU 76 1_555 B CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.593 ? metalc ? metalc6 A OE2 GLU 76 A GLU 76 1_555 B CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc7 A OD1 ASP 105 A ASP 105 1_555 C CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc8 A OD1 ASN 107 A ASN 107 1_555 C CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc9 A OD1 ASP 109 A ASP 109 1_555 C CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.585 ? metalc ? metalc10 A O TYR 111 A TYR 111 1_555 C CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? metalc ? metalc11 A OE1 GLU 116 A GLU 116 1_555 C CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.695 ? metalc ? metalc12 A OE2 GLU 116 A GLU 116 1_555 C CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.558 ? metalc ? metalc13 A OD2 ASP 141 A ASP 141 1_555 D CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? metalc ? metalc14 A OD1 ASN 143 A ASN 143 1_555 D CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? metalc ? metalc15 A OD1 ASP 145 A ASP 145 1_555 D CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? metalc ? metalc16 A O ARG 147 A ARG 147 1_555 D CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc17 A OE1 GLU 152 A GLU 152 1_555 D CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? metalc ? metalc18 A OE2 GLU 152 A GLU 152 1_555 D CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.685 ? metalc ? metalc19 B CA CA . A CA 201 1_555 H O HOH . A HOH 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc20 C CA CA . A CA 202 1_555 H O HOH . A HOH 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.571 ? metalc ? metalc21 D CA CA . A CA 203 1_555 H O HOH . A HOH 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? # _chem_comp.formula 'C24 H34 N2 O' _chem_comp.formula_weight 366.54 _chem_comp.id BEP _chem_comp.mon_nstd_flag . _chem_comp.name '1-ISOBUTOXY-2-PYRROLIDINO-3[N-BENZYLANILINO] PROPANE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms BEPRIDIL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BEP sing 70 n n C1 O1 BEP sing 71 n n C1 H11 BEP sing 72 n n C1 H12 BEP sing 73 n n C2 C3 BEP sing 74 n n C2 N2 BEP sing 75 n n C2 H21 BEP sing 76 n n C3 N3 BEP sing 77 n n C3 H31 BEP sing 78 n n C3 H32 BEP sing 79 n n O1 C4 BEP sing 80 n n N2 C8 BEP sing 81 n n N2 C11 BEP sing 82 n n N3 C12 BEP sing 83 n n N3 C19 BEP sing 84 n n C4 C5 BEP sing 85 n n C4 H41 BEP sing 86 n n C4 H42 BEP sing 87 n n C5 C6 BEP sing 88 n n C5 C7 BEP sing 89 n n C5 H51 BEP sing 90 n n C6 H61 BEP sing 91 n n C6 H62 BEP sing 92 n n C6 H63 BEP sing 93 n n C7 H71 BEP sing 94 n n C7 H72 BEP sing 95 n n C7 H73 BEP sing 96 n n C8 C9 BEP sing 97 n n C8 H81 BEP sing 98 n n C8 H82 BEP sing 99 n n C9 C10 BEP sing 100 n n C9 H91 BEP sing 101 n n C9 H92 BEP sing 102 n n C10 C11 BEP sing 103 n n C10 H101 BEP sing 104 n n C10 H102 BEP sing 105 n n C11 H111 BEP sing 106 n n C11 H112 BEP sing 107 n n C12 C13 BEP sing 108 n n C12 H121 BEP sing 109 n n C12 H122 BEP sing 110 n n C13 C14 BEP doub 111 n y C13 C18 BEP sing 112 n y C14 C15 BEP sing 113 n y C14 H141 BEP sing 114 n n C15 C16 BEP doub 115 n y C15 H151 BEP sing 116 n n C16 C17 BEP sing 117 n y C16 H161 BEP sing 118 n n C17 C18 BEP doub 119 n y C17 H171 BEP sing 120 n n C18 H181 BEP sing 121 n n C19 C20 BEP doub 122 n y C19 C24 BEP sing 123 n y C20 C21 BEP sing 124 n y C20 H201 BEP sing 125 n n C21 C22 BEP doub 126 n y C21 H211 BEP sing 127 n n C22 C23 BEP sing 128 n y C22 H221 BEP sing 129 n n C23 C24 BEP doub 130 n y C23 H231 BEP sing 131 n n C24 H241 BEP sing 132 n n # _atom_sites.entry_id 1DTL _atom_sites.fract_transf_matrix[1][1] 0.027571 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016119 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016119 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 201 201 CA CA . C 2 CA A 1 202 202 CA CA . D 2 CA A 1 203 203 CA CA . E 3 BEP A 1 204 1 BEP BEP . F 3 BEP A 1 205 2 BEP BEP . G 3 BEP A 1 206 3 BEP BEP . H 4 HOH A 1 401 401 HOH WAT . H 4 HOH A 2 402 402 HOH WAT . H 4 HOH A 3 403 403 HOH WAT . H 4 HOH A 4 404 404 HOH WAT . H 4 HOH A 5 405 405 HOH WAT . H 4 HOH A 6 406 406 HOH WAT . H 4 HOH A 7 407 407 HOH WAT . H 4 HOH A 8 408 408 HOH WAT . H 4 HOH A 9 409 409 HOH WAT . H 4 HOH A 10 410 410 HOH WAT . H 4 HOH A 11 411 411 HOH WAT . H 4 HOH A 12 412 412 HOH WAT . H 4 HOH A 13 413 413 HOH WAT . H 4 HOH A 14 414 414 HOH WAT . H 4 HOH A 15 415 415 HOH WAT . H 4 HOH A 16 416 416 HOH WAT . H 4 HOH A 17 417 417 HOH WAT . H 4 HOH A 18 418 418 HOH WAT . H 4 HOH A 19 419 419 HOH WAT . H 4 HOH A 20 420 420 HOH WAT . H 4 HOH A 21 421 421 HOH WAT . H 4 HOH A 22 422 422 HOH WAT . H 4 HOH A 23 423 423 HOH WAT . H 4 HOH A 24 424 424 HOH WAT . H 4 HOH A 25 425 425 HOH WAT . H 4 HOH A 26 426 426 HOH WAT . H 4 HOH A 27 427 427 HOH WAT . H 4 HOH A 28 428 428 HOH WAT . H 4 HOH A 29 430 430 HOH WAT . H 4 HOH A 30 431 431 HOH WAT . H 4 HOH A 31 432 432 HOH WAT . H 4 HOH A 32 433 433 HOH WAT . H 4 HOH A 33 434 434 HOH WAT . H 4 HOH A 34 436 436 HOH WAT . H 4 HOH A 35 437 437 HOH WAT . H 4 HOH A 36 438 438 HOH WAT . H 4 HOH A 37 439 439 HOH WAT . H 4 HOH A 38 440 440 HOH WAT . H 4 HOH A 39 441 441 HOH WAT . H 4 HOH A 40 442 442 HOH WAT . H 4 HOH A 41 443 443 HOH WAT . H 4 HOH A 42 444 444 HOH WAT . H 4 HOH A 43 445 445 HOH WAT . H 4 HOH A 44 446 446 HOH WAT . H 4 HOH A 45 447 447 HOH WAT . H 4 HOH A 46 448 448 HOH WAT . H 4 HOH A 47 449 449 HOH WAT . H 4 HOH A 48 450 450 HOH WAT . H 4 HOH A 49 451 451 HOH WAT . H 4 HOH A 50 452 452 HOH WAT . H 4 HOH A 51 454 454 HOH WAT . H 4 HOH A 52 455 455 HOH WAT . H 4 HOH A 53 456 456 HOH WAT . H 4 HOH A 54 457 457 HOH WAT . H 4 HOH A 55 458 458 HOH WAT . H 4 HOH A 56 459 459 HOH WAT . H 4 HOH A 57 460 460 HOH WAT . H 4 HOH A 58 462 462 HOH WAT . H 4 HOH A 59 463 463 HOH WAT . H 4 HOH A 60 464 464 HOH WAT . H 4 HOH A 61 465 465 HOH WAT . H 4 HOH A 62 466 466 HOH WAT . H 4 HOH A 63 467 467 HOH WAT . H 4 HOH A 64 468 468 HOH WAT . H 4 HOH A 65 469 469 HOH WAT . H 4 HOH A 66 470 470 HOH WAT . H 4 HOH A 67 472 472 HOH WAT . H 4 HOH A 68 474 474 HOH WAT . H 4 HOH A 69 475 475 HOH WAT . H 4 HOH A 70 476 476 HOH WAT . H 4 HOH A 71 477 477 HOH WAT . H 4 HOH A 72 478 478 HOH WAT . H 4 HOH A 73 479 479 HOH WAT . H 4 HOH A 74 480 480 HOH WAT . H 4 HOH A 75 481 481 HOH WAT . H 4 HOH A 76 482 482 HOH WAT . H 4 HOH A 77 483 483 HOH WAT . H 4 HOH A 78 484 484 HOH WAT . H 4 HOH A 79 485 485 HOH WAT . H 4 HOH A 80 486 486 HOH WAT . H 4 HOH A 81 487 487 HOH WAT . H 4 HOH A 82 488 488 HOH WAT . H 4 HOH A 83 489 489 HOH WAT . H 4 HOH A 84 490 490 HOH WAT . H 4 HOH A 85 491 491 HOH WAT . H 4 HOH A 86 492 492 HOH WAT . H 4 HOH A 87 493 493 HOH WAT . H 4 HOH A 88 494 494 HOH WAT . H 4 HOH A 89 495 495 HOH WAT . H 4 HOH A 90 496 496 HOH WAT . H 4 HOH A 91 497 497 HOH WAT . H 4 HOH A 92 498 498 HOH WAT . H 4 HOH A 93 499 499 HOH WAT . H 4 HOH A 94 500 500 HOH WAT . H 4 HOH A 95 501 501 HOH WAT . H 4 HOH A 96 504 504 HOH WAT . H 4 HOH A 97 507 507 HOH WAT . H 4 HOH A 98 509 509 HOH WAT . H 4 HOH A 99 510 510 HOH WAT . H 4 HOH A 100 511 511 HOH WAT . H 4 HOH A 101 512 512 HOH WAT . H 4 HOH A 102 513 513 HOH WAT . H 4 HOH A 103 514 514 HOH WAT . H 4 HOH A 104 515 515 HOH WAT . H 4 HOH A 105 516 516 HOH WAT . H 4 HOH A 106 517 517 HOH WAT . H 4 HOH A 107 518 518 HOH WAT . H 4 HOH A 108 519 519 HOH WAT . H 4 HOH A 109 520 520 HOH WAT . H 4 HOH A 110 521 521 HOH WAT . H 4 HOH A 111 523 523 HOH WAT . H 4 HOH A 112 524 524 HOH WAT . H 4 HOH A 113 525 525 HOH WAT . H 4 HOH A 114 526 526 HOH WAT . H 4 HOH A 115 527 527 HOH WAT . H 4 HOH A 116 528 528 HOH WAT . H 4 HOH A 117 529 529 HOH WAT . H 4 HOH A 118 530 530 HOH WAT . H 4 HOH A 119 531 531 HOH WAT . H 4 HOH A 120 532 532 HOH WAT . H 4 HOH A 121 533 533 HOH WAT . H 4 HOH A 122 534 534 HOH WAT . H 4 HOH A 123 536 536 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BEP . . . E 3 6.726 1.557 1.588 1 25.31 ? C1 BEP 204 A 1 HETATM 2 C C2 BEP . . . E 3 5.858 2.418 0.641 1 32.71 ? C2 BEP 204 A 1 HETATM 3 C C3 BEP . . . E 3 4.376 2.073 0.759 1 16.31 ? C3 BEP 204 A 1 HETATM 4 O O1 BEP . . . E 3 7.89 2.334 1.794 1 22.81 ? O1 BEP 204 A 1 HETATM 5 N N2 BEP . . . E 3 6.401 2.254 -0.689 1 31.04 ? N2 BEP 204 A 1 HETATM 6 N N3 BEP . . . E 3 4.235 1.384 2.055 1 26.7 ? N3 BEP 204 A 1 HETATM 7 C C4 BEP . . . E 3 8.023 2.606 3.173 1 30.76 ? C4 BEP 204 A 1 HETATM 8 C C5 BEP . . . E 3 8.495 4.05 3.347 1 30.06 ? C5 BEP 204 A 1 HETATM 9 C C6 BEP . . . E 3 7.535 5.009 2.643 1 34.33 ? C6 BEP 204 A 1 HETATM 10 C C7 BEP . . . E 3 8.608 4.41 4.831 1 23.71 ? C7 BEP 204 A 1 HETATM 11 C C8 BEP . . . E 3 5.488 1.636 -1.627 1 36.12 ? C8 BEP 204 A 1 HETATM 12 C C9 BEP . . . E 3 6.398 1.496 -2.856 1 32.58 ? C9 BEP 204 A 1 HETATM 13 C C10 BEP . . . E 3 7.711 1.067 -2.202 1 35.87 ? C10 BEP 204 A 1 HETATM 14 C C11 BEP . . . E 3 7.396 1.193 -0.712 1 29.11 ? C11 BEP 204 A 1 HETATM 15 C C12 BEP . . . E 3 3.911 2.288 3.127 1 28.19 ? C12 BEP 204 A 1 HETATM 16 C C13 BEP . . . E 3 2.97 3.364 3.154 1 23.77 ? C13 BEP 204 A 1 HETATM 17 C C14 BEP . . . E 3 3.214 4.414 4.049 1 17.6 ? C14 BEP 204 A 1 HETATM 18 C C15 BEP . . . E 3 2.327 5.474 4.144 1 21.31 ? C15 BEP 204 A 1 HETATM 19 C C16 BEP . . . E 3 1.201 5.541 3.334 1 21.79 ? C16 BEP 204 A 1 HETATM 20 C C17 BEP . . . E 3 0.956 4.512 2.433 1 17.77 ? C17 BEP 204 A 1 HETATM 21 C C18 BEP . . . E 3 1.835 3.436 2.358 1 20.96 ? C18 BEP 204 A 1 HETATM 22 C C19 BEP . . . E 3 3.262 0.381 1.92 1 17.32 ? C19 BEP 204 A 1 HETATM 23 C C20 BEP . . . E 3 3.224 -0.376 0.753 1 15.69 ? C20 BEP 204 A 1 HETATM 24 C C21 BEP . . . E 3 2.288 -1.396 0.599 1 14.43 ? C21 BEP 204 A 1 HETATM 25 C C22 BEP . . . E 3 1.374 -1.649 1.614 1 19.59 ? C22 BEP 204 A 1 HETATM 26 C C23 BEP . . . E 3 1.413 -0.902 2.791 1 16.49 ? C23 BEP 204 A 1 HETATM 27 C C24 BEP . . . E 3 2.322 0.14 2.918 1 10.48 ? C24 BEP 204 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #