data_1DTM # _model_server_result.job_id FYaT8p2ygnQIXndWREXzNg _model_server_result.datetime_utc '2024-11-30 07:41:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1dtm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":154}' # _entry.id 1DTM # _exptl.entry_id 1DTM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1DTM _cell.length_a 40.276 _cell.length_b 48.892 _cell.length_c 78.935 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DTM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B FE HEM . A HEM 154 1_555 C NE2 4MZ . A 4MZ 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? metalc ? metalc2 B FE HEM . A HEM 154 1_555 D O HOH . A HOH 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.72 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 128 n n CHA C4D HEM doub 129 n n CHA HHA HEM sing 130 n n CHB C4A HEM sing 131 n n CHB C1B HEM doub 132 n n CHB HHB HEM sing 133 n n CHC C4B HEM sing 134 n n CHC C1C HEM doub 135 n n CHC HHC HEM sing 136 n n CHD C4C HEM doub 137 n n CHD C1D HEM sing 138 n n CHD HHD HEM sing 139 n n C1A C2A HEM doub 140 n y C1A NA HEM sing 141 n y C2A C3A HEM sing 142 n y C2A CAA HEM sing 143 n n C3A C4A HEM doub 144 n y C3A CMA HEM sing 145 n n C4A NA HEM sing 146 n y CMA HMA HEM sing 147 n n CMA HMAA HEM sing 148 n n CMA HMAB HEM sing 149 n n CAA CBA HEM sing 150 n n CAA HAA HEM sing 151 n n CAA HAAA HEM sing 152 n n CBA CGA HEM sing 153 n n CBA HBA HEM sing 154 n n CBA HBAA HEM sing 155 n n CGA O1A HEM doub 156 n n CGA O2A HEM sing 157 n n C1B C2B HEM sing 158 n n C1B NB HEM sing 159 n n C2B C3B HEM doub 160 n n C2B CMB HEM sing 161 n n C3B C4B HEM sing 162 n n C3B CAB HEM sing 163 n n C4B NB HEM doub 164 n n CMB HMB HEM sing 165 n n CMB HMBA HEM sing 166 n n CMB HMBB HEM sing 167 n n CAB CBB HEM doub 168 n n CAB HAB HEM sing 169 n n CBB HBB HEM sing 170 n n CBB HBBA HEM sing 171 n n C1C C2C HEM sing 172 n y C1C NC HEM sing 173 n y C2C C3C HEM doub 174 n y C2C CMC HEM sing 175 n n C3C C4C HEM sing 176 n y C3C CAC HEM sing 177 n n C4C NC HEM sing 178 n y CMC HMC HEM sing 179 n n CMC HMCA HEM sing 180 n n CMC HMCB HEM sing 181 n n CAC CBC HEM doub 182 n n CAC HAC HEM sing 183 n n CBC HBC HEM sing 184 n n CBC HBCA HEM sing 185 n n C1D C2D HEM sing 186 n n C1D ND HEM doub 187 n n C2D C3D HEM doub 188 n n C2D CMD HEM sing 189 n n C3D C4D HEM sing 190 n n C3D CAD HEM sing 191 n n C4D ND HEM sing 192 n n CMD HMD HEM sing 193 n n CMD HMDA HEM sing 194 n n CMD HMDB HEM sing 195 n n CAD CBD HEM sing 196 n n CAD HAD HEM sing 197 n n CAD HADA HEM sing 198 n n CBD CGD HEM sing 199 n n CBD HBD HEM sing 200 n n CBD HBDA HEM sing 201 n n CGD O1D HEM doub 202 n n CGD O2D HEM sing 203 n n O2A H2A HEM sing 204 n n O2D H2D HEM sing 205 n n FE NA HEM sing 206 n n FE NB HEM sing 207 n n FE NC HEM sing 208 n n FE ND HEM sing 209 n n # _atom_sites.entry_id 1DTM _atom_sites.fract_transf_matrix[1][1] 0.024829 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020453 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012669 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 154 0 HEM HEM . C 3 4MZ A 1 155 0 4MZ 4IM . D 4 HOH A 1 156 0 HOH WAT . D 4 HOH A 2 157 0 HOH WAT . D 4 HOH A 3 158 0 HOH WAT . D 4 HOH A 4 159 0 HOH WAT . D 4 HOH A 5 160 0 HOH WAT . D 4 HOH A 6 161 0 HOH WAT . D 4 HOH A 7 162 0 HOH WAT . D 4 HOH A 8 163 0 HOH WAT . D 4 HOH A 9 164 0 HOH WAT . D 4 HOH A 10 165 0 HOH WAT . D 4 HOH A 11 166 0 HOH WAT . D 4 HOH A 12 167 0 HOH WAT . D 4 HOH A 13 168 0 HOH WAT . D 4 HOH A 14 169 0 HOH WAT . D 4 HOH A 15 170 0 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 -6.407 33.822 -8.909 1 19.98 ? CHA HEM 154 A 1 HETATM 2 C CHB HEM . . . B 2 -4.735 31.58 -4.959 1 13.08 ? CHB HEM 154 A 1 HETATM 3 C CHC HEM . . . B 2 -4.381 27.506 -7.324 1 15.49 ? CHC HEM 154 A 1 HETATM 4 C CHD HEM . . . B 2 -6.289 29.76 -11.103 1 2.34 ? CHD HEM 154 A 1 HETATM 5 C C1A HEM . . . B 2 -5.905 33.479 -7.718 1 22.96 ? C1A HEM 154 A 1 HETATM 6 C C2A HEM . . . B 2 -5.746 34.463 -6.679 1 24.22 ? C2A HEM 154 A 1 HETATM 7 C C3A HEM . . . B 2 -5.291 33.831 -5.615 1 36.08 ? C3A HEM 154 A 1 HETATM 8 C C4A HEM . . . B 2 -5.175 32.446 -5.927 1 1.16 ? C4A HEM 154 A 1 HETATM 9 C CMA HEM . . . B 2 -4.962 34.344 -4.204 1 43.38 ? CMA HEM 154 A 1 HETATM 10 C CAA HEM . . . B 2 -6.174 35.942 -6.782 1 42.45 ? CAA HEM 154 A 1 HETATM 11 C CBA HEM . . . B 2 -7.646 36.266 -6.322 1 30.84 ? CBA HEM 154 A 1 HETATM 12 C CGA HEM . . . B 2 -8.675 35.329 -6.947 1 35.43 ? CGA HEM 154 A 1 HETATM 13 O O1A HEM . . . B 2 -8.986 35.519 -8.176 1 35.05 ? O1A HEM 154 A 1 HETATM 14 O O2A HEM . . . B 2 -9.014 34.347 -6.231 1 26.26 ? O2A HEM 154 A 1 HETATM 15 C C1B HEM . . . B 2 -4.546 30.314 -5.27 1 1 ? C1B HEM 154 A 1 HETATM 16 C C2B HEM . . . B 2 -4.112 29.404 -4.311 1 13.35 ? C2B HEM 154 A 1 HETATM 17 C C3B HEM . . . B 2 -3.962 28.22 -4.969 1 5.36 ? C3B HEM 154 A 1 HETATM 18 C C4B HEM . . . B 2 -4.313 28.468 -6.365 1 2.95 ? C4B HEM 154 A 1 HETATM 19 C CMB HEM . . . B 2 -3.849 29.938 -2.859 1 10.12 ? CMB HEM 154 A 1 HETATM 20 C CAB HEM . . . B 2 -3.583 26.787 -4.483 1 22.45 ? CAB HEM 154 A 1 HETATM 21 C CBB HEM . . . B 2 -2.54 26.421 -3.721 1 14.7 ? CBB HEM 154 A 1 HETATM 22 C C1C HEM . . . B 2 -4.849 27.854 -8.518 1 14.18 ? C1C HEM 154 A 1 HETATM 23 C C2C HEM . . . B 2 -4.93 26.916 -9.624 1 12.43 ? C2C HEM 154 A 1 HETATM 24 C C3C HEM . . . B 2 -5.368 27.597 -10.704 1 8.32 ? C3C HEM 154 A 1 HETATM 25 C C4C HEM . . . B 2 -5.658 28.917 -10.243 1 37.48 ? C4C HEM 154 A 1 HETATM 26 C CMC HEM . . . B 2 -4.511 25.459 -9.478 1 8.81 ? CMC HEM 154 A 1 HETATM 27 C CAC HEM . . . B 2 -5.765 27.216 -12.153 1 31.19 ? CAC HEM 154 A 1 HETATM 28 C CBC HEM . . . B 2 -5.355 26.074 -12.721 1 42.73 ? CBC HEM 154 A 1 HETATM 29 C C1D HEM . . . B 2 -6.518 31.054 -10.858 1 26.49 ? C1D HEM 154 A 1 HETATM 30 C C2D HEM . . . B 2 -6.859 32.056 -11.854 1 25.42 ? C2D HEM 154 A 1 HETATM 31 C C3D HEM . . . B 2 -6.908 33.205 -11.204 1 23.14 ? C3D HEM 154 A 1 HETATM 32 C C4D HEM . . . B 2 -6.544 32.909 -9.846 1 25.11 ? C4D HEM 154 A 1 HETATM 33 C CMD HEM . . . B 2 -7.129 31.755 -13.349 1 15.17 ? CMD HEM 154 A 1 HETATM 34 C CAD HEM . . . B 2 -7.073 34.64 -11.714 1 44.77 ? CAD HEM 154 A 1 HETATM 35 C CBD HEM . . . B 2 -5.77 35.519 -11.681 1 70.07 ? CBD HEM 154 A 1 HETATM 36 C CGD HEM . . . B 2 -5.618 36.708 -12.632 1 41.25 ? CGD HEM 154 A 1 HETATM 37 O O1D HEM . . . B 2 -5.27 36.427 -13.801 1 57.1 ? O1D HEM 154 A 1 HETATM 38 O O2D HEM . . . B 2 -5.951 37.887 -12.247 1 51.4 ? O2D HEM 154 A 1 HETATM 39 N NA HEM . . . B 2 -5.526 32.196 -7.272 1 9.4 ? NA HEM 154 A 1 HETATM 40 N NB HEM . . . B 2 -4.639 29.775 -6.558 1 11.78 ? NB HEM 154 A 1 HETATM 41 N NC HEM . . . B 2 -5.317 29.128 -8.897 1 11.66 ? NC HEM 154 A 1 HETATM 42 N ND HEM . . . B 2 -6.249 31.603 -9.608 1 19.86 ? ND HEM 154 A 1 HETATM 43 FE FE HEM . . . B 2 -5.458 30.677 -8.192 1 25.97 ? FE HEM 154 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #