data_1DTM
#
_model_server_result.job_id            WCtc9GoC2yseRAmN28JA1w 
_model_server_result.datetime_utc      '2024-10-10 17:10:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1dtm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":154}' 
#
_entry.id    1DTM 
#
_exptl.entry_id    1DTM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1DTM 
_cell.length_a            40.276 
_cell.length_b            48.892 
_cell.length_c            78.935 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1DTM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B FE HEM . A HEM 154 1_555 C NE2 4MZ . A 4MZ 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? 
metalc ? metalc2 B FE HEM . A HEM 154 1_555 D O HOH . A HOH 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.72 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 128 n n 
CHA C4D HEM doub 129 n n 
CHA HHA HEM sing 130 n n 
CHB C4A HEM sing 131 n n 
CHB C1B HEM doub 132 n n 
CHB HHB HEM sing 133 n n 
CHC C4B HEM sing 134 n n 
CHC C1C HEM doub 135 n n 
CHC HHC HEM sing 136 n n 
CHD C4C HEM doub 137 n n 
CHD C1D HEM sing 138 n n 
CHD HHD HEM sing 139 n n 
C1A C2A HEM doub 140 n y 
C1A NA HEM sing 141 n y 
C2A C3A HEM sing 142 n y 
C2A CAA HEM sing 143 n n 
C3A C4A HEM doub 144 n y 
C3A CMA HEM sing 145 n n 
C4A NA HEM sing 146 n y 
CMA HMA HEM sing 147 n n 
CMA HMAA HEM sing 148 n n 
CMA HMAB HEM sing 149 n n 
CAA CBA HEM sing 150 n n 
CAA HAA HEM sing 151 n n 
CAA HAAA HEM sing 152 n n 
CBA CGA HEM sing 153 n n 
CBA HBA HEM sing 154 n n 
CBA HBAA HEM sing 155 n n 
CGA O1A HEM doub 156 n n 
CGA O2A HEM sing 157 n n 
C1B C2B HEM sing 158 n n 
C1B NB HEM sing 159 n n 
C2B C3B HEM doub 160 n n 
C2B CMB HEM sing 161 n n 
C3B C4B HEM sing 162 n n 
C3B CAB HEM sing 163 n n 
C4B NB HEM doub 164 n n 
CMB HMB HEM sing 165 n n 
CMB HMBA HEM sing 166 n n 
CMB HMBB HEM sing 167 n n 
CAB CBB HEM doub 168 n n 
CAB HAB HEM sing 169 n n 
CBB HBB HEM sing 170 n n 
CBB HBBA HEM sing 171 n n 
C1C C2C HEM sing 172 n y 
C1C NC HEM sing 173 n y 
C2C C3C HEM doub 174 n y 
C2C CMC HEM sing 175 n n 
C3C C4C HEM sing 176 n y 
C3C CAC HEM sing 177 n n 
C4C NC HEM sing 178 n y 
CMC HMC HEM sing 179 n n 
CMC HMCA HEM sing 180 n n 
CMC HMCB HEM sing 181 n n 
CAC CBC HEM doub 182 n n 
CAC HAC HEM sing 183 n n 
CBC HBC HEM sing 184 n n 
CBC HBCA HEM sing 185 n n 
C1D C2D HEM sing 186 n n 
C1D ND HEM doub 187 n n 
C2D C3D HEM doub 188 n n 
C2D CMD HEM sing 189 n n 
C3D C4D HEM sing 190 n n 
C3D CAD HEM sing 191 n n 
C4D ND HEM sing 192 n n 
CMD HMD HEM sing 193 n n 
CMD HMDA HEM sing 194 n n 
CMD HMDB HEM sing 195 n n 
CAD CBD HEM sing 196 n n 
CAD HAD HEM sing 197 n n 
CAD HADA HEM sing 198 n n 
CBD CGD HEM sing 199 n n 
CBD HBD HEM sing 200 n n 
CBD HBDA HEM sing 201 n n 
CGD O1D HEM doub 202 n n 
CGD O2D HEM sing 203 n n 
O2A H2A HEM sing 204 n n 
O2D H2D HEM sing 205 n n 
FE NA HEM sing 206 n n 
FE NB HEM sing 207 n n 
FE NC HEM sing 208 n n 
FE ND HEM sing 209 n n 
#
_atom_sites.entry_id                     1DTM 
_atom_sites.fract_transf_matrix[1][1]    0.024829 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020453 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012669 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 154 0 HEM HEM . 
C 3 4MZ A 1 155 0 4MZ 4IM . 
D 4 HOH A 1 156 0 HOH WAT . 
D 4 HOH A 2 157 0 HOH WAT . 
D 4 HOH A 3 158 0 HOH WAT . 
D 4 HOH A 4 159 0 HOH WAT . 
D 4 HOH A 5 160 0 HOH WAT . 
D 4 HOH A 6 161 0 HOH WAT . 
D 4 HOH A 7 162 0 HOH WAT . 
D 4 HOH A 8 163 0 HOH WAT . 
D 4 HOH A 9 164 0 HOH WAT . 
D 4 HOH A 10 165 0 HOH WAT . 
D 4 HOH A 11 166 0 HOH WAT . 
D 4 HOH A 12 167 0 HOH WAT . 
D 4 HOH A 13 168 0 HOH WAT . 
D 4 HOH A 14 169 0 HOH WAT . 
D 4 HOH A 15 170 0 HOH WAT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . B 2 -6.407 33.822 -8.909 1 19.98 ? CHA HEM 154 A 1 
HETATM 2 C CHB HEM . . . B 2 -4.735 31.58 -4.959 1 13.08 ? CHB HEM 154 A 1 
HETATM 3 C CHC HEM . . . B 2 -4.381 27.506 -7.324 1 15.49 ? CHC HEM 154 A 1 
HETATM 4 C CHD HEM . . . B 2 -6.289 29.76 -11.103 1 2.34 ? CHD HEM 154 A 1 
HETATM 5 C C1A HEM . . . B 2 -5.905 33.479 -7.718 1 22.96 ? C1A HEM 154 A 1 
HETATM 6 C C2A HEM . . . B 2 -5.746 34.463 -6.679 1 24.22 ? C2A HEM 154 A 1 
HETATM 7 C C3A HEM . . . B 2 -5.291 33.831 -5.615 1 36.08 ? C3A HEM 154 A 1 
HETATM 8 C C4A HEM . . . B 2 -5.175 32.446 -5.927 1 1.16 ? C4A HEM 154 A 1 
HETATM 9 C CMA HEM . . . B 2 -4.962 34.344 -4.204 1 43.38 ? CMA HEM 154 A 1 
HETATM 10 C CAA HEM . . . B 2 -6.174 35.942 -6.782 1 42.45 ? CAA HEM 154 A 1 
HETATM 11 C CBA HEM . . . B 2 -7.646 36.266 -6.322 1 30.84 ? CBA HEM 154 A 1 
HETATM 12 C CGA HEM . . . B 2 -8.675 35.329 -6.947 1 35.43 ? CGA HEM 154 A 1 
HETATM 13 O O1A HEM . . . B 2 -8.986 35.519 -8.176 1 35.05 ? O1A HEM 154 A 1 
HETATM 14 O O2A HEM . . . B 2 -9.014 34.347 -6.231 1 26.26 ? O2A HEM 154 A 1 
HETATM 15 C C1B HEM . . . B 2 -4.546 30.314 -5.27 1 1 ? C1B HEM 154 A 1 
HETATM 16 C C2B HEM . . . B 2 -4.112 29.404 -4.311 1 13.35 ? C2B HEM 154 A 1 
HETATM 17 C C3B HEM . . . B 2 -3.962 28.22 -4.969 1 5.36 ? C3B HEM 154 A 1 
HETATM 18 C C4B HEM . . . B 2 -4.313 28.468 -6.365 1 2.95 ? C4B HEM 154 A 1 
HETATM 19 C CMB HEM . . . B 2 -3.849 29.938 -2.859 1 10.12 ? CMB HEM 154 A 1 
HETATM 20 C CAB HEM . . . B 2 -3.583 26.787 -4.483 1 22.45 ? CAB HEM 154 A 1 
HETATM 21 C CBB HEM . . . B 2 -2.54 26.421 -3.721 1 14.7 ? CBB HEM 154 A 1 
HETATM 22 C C1C HEM . . . B 2 -4.849 27.854 -8.518 1 14.18 ? C1C HEM 154 A 1 
HETATM 23 C C2C HEM . . . B 2 -4.93 26.916 -9.624 1 12.43 ? C2C HEM 154 A 1 
HETATM 24 C C3C HEM . . . B 2 -5.368 27.597 -10.704 1 8.32 ? C3C HEM 154 A 1 
HETATM 25 C C4C HEM . . . B 2 -5.658 28.917 -10.243 1 37.48 ? C4C HEM 154 A 1 
HETATM 26 C CMC HEM . . . B 2 -4.511 25.459 -9.478 1 8.81 ? CMC HEM 154 A 1 
HETATM 27 C CAC HEM . . . B 2 -5.765 27.216 -12.153 1 31.19 ? CAC HEM 154 A 1 
HETATM 28 C CBC HEM . . . B 2 -5.355 26.074 -12.721 1 42.73 ? CBC HEM 154 A 1 
HETATM 29 C C1D HEM . . . B 2 -6.518 31.054 -10.858 1 26.49 ? C1D HEM 154 A 1 
HETATM 30 C C2D HEM . . . B 2 -6.859 32.056 -11.854 1 25.42 ? C2D HEM 154 A 1 
HETATM 31 C C3D HEM . . . B 2 -6.908 33.205 -11.204 1 23.14 ? C3D HEM 154 A 1 
HETATM 32 C C4D HEM . . . B 2 -6.544 32.909 -9.846 1 25.11 ? C4D HEM 154 A 1 
HETATM 33 C CMD HEM . . . B 2 -7.129 31.755 -13.349 1 15.17 ? CMD HEM 154 A 1 
HETATM 34 C CAD HEM . . . B 2 -7.073 34.64 -11.714 1 44.77 ? CAD HEM 154 A 1 
HETATM 35 C CBD HEM . . . B 2 -5.77 35.519 -11.681 1 70.07 ? CBD HEM 154 A 1 
HETATM 36 C CGD HEM . . . B 2 -5.618 36.708 -12.632 1 41.25 ? CGD HEM 154 A 1 
HETATM 37 O O1D HEM . . . B 2 -5.27 36.427 -13.801 1 57.1 ? O1D HEM 154 A 1 
HETATM 38 O O2D HEM . . . B 2 -5.951 37.887 -12.247 1 51.4 ? O2D HEM 154 A 1 
HETATM 39 N NA HEM . . . B 2 -5.526 32.196 -7.272 1 9.4 ? NA HEM 154 A 1 
HETATM 40 N NB HEM . . . B 2 -4.639 29.775 -6.558 1 11.78 ? NB HEM 154 A 1 
HETATM 41 N NC HEM . . . B 2 -5.317 29.128 -8.897 1 11.66 ? NC HEM 154 A 1 
HETATM 42 N ND HEM . . . B 2 -6.249 31.603 -9.608 1 19.86 ? ND HEM 154 A 1 
HETATM 43 FE FE HEM . . . B 2 -5.458 30.677 -8.192 1 25.97 ? FE HEM 154 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           272 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           43 
#