data_1DTP
#
_model_server_result.job_id            m6XlO-Bx5XEQhELt25CHBA 
_model_server_result.datetime_utc      '2025-01-01 10:28:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1dtp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":200}' 
#
_entry.id    1DTP 
#
_exptl.entry_id    1DTP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              653.387 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENYLYL-3'-5'-PHOSPHO-URIDINE-3'-MONOPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          101.5 
_cell.angle_gamma         90 
_cell.entry_id            1DTP 
_cell.length_a            55.7 
_cell.length_b            43.9 
_cell.length_c            73.9 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1DTP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C19 H25 N7 O15 P2' 
_chem_comp.formula_weight    653.387 
_chem_comp.id                APU 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENYLYL-3'-5'-PHOSPHO-URIDINE-3'-MONOPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A APU doub 13 n n 
PA O2A APU sing 14 n n 
PA O3B APU sing 15 n n 
PA O5D APU sing 16 n n 
O2A HOA2 APU sing 17 n n 
O5B C5B APU sing 18 n n 
O5B HO5A APU sing 19 n n 
C5B C4B APU sing 20 n n 
C5B H51A APU sing 21 n n 
C5B H52A APU sing 22 n n 
C4B O4B APU sing 23 n n 
C4B C3B APU sing 24 n n 
C4B H4B APU sing 25 n n 
O4B C1B APU sing 26 n n 
C3B O3B APU sing 27 n n 
C3B C2B APU sing 28 n n 
C3B H3B APU sing 29 n n 
C2B O2B APU sing 30 n n 
C2B C1B APU sing 31 n n 
C2B H2B APU sing 32 n n 
O2B HO2A APU sing 33 n n 
C1B N9A APU sing 34 n n 
C1B H1B APU sing 35 n n 
N9A C8A APU sing 36 n y 
N9A C4A APU sing 37 n y 
C8A N7A APU doub 38 n y 
C8A H8A APU sing 39 n n 
N7A C5A APU sing 40 n y 
C5A C6A APU sing 41 n y 
C5A C4A APU doub 42 n y 
C6A N6A APU sing 43 n n 
C6A N1A APU doub 44 n y 
N6A H61A APU sing 45 n n 
N6A H62A APU sing 46 n n 
N1A C2A APU sing 47 n y 
C2A N3A APU doub 48 n y 
C2A H2A APU sing 49 n n 
N3A C4A APU sing 50 n y 
N1U C2U APU sing 51 n n 
N1U C6U APU sing 52 n n 
N1U C1D APU sing 53 n n 
C2U O2U APU doub 54 n n 
C2U N3U APU sing 55 n n 
N3U C4U APU sing 56 n n 
N3U H3U APU sing 57 n n 
C4U O4U APU doub 58 n n 
C4U C5U APU sing 59 n n 
C5U C6U APU doub 60 n n 
C5U H5U APU sing 61 n n 
C6U H6U APU sing 62 n n 
C1D C2D APU sing 63 n n 
C1D O4D APU sing 64 n n 
C1D H1D APU sing 65 n n 
C2D O2D APU sing 66 n n 
C2D C3D APU sing 67 n n 
C2D H2D APU sing 68 n n 
O2D HO2' APU sing 69 n n 
C3D O3D APU sing 70 n n 
C3D C4D APU sing 71 n n 
C3D H3D APU sing 72 n n 
O3D PU APU sing 73 n n 
C4D O4D APU sing 74 n n 
C4D C5D APU sing 75 n n 
C4D H4D APU sing 76 n n 
O5D C5D APU sing 77 n n 
C5D H51U APU sing 78 n n 
C5D H52U APU sing 79 n n 
PU O1X APU doub 80 n n 
PU O2X APU sing 81 n n 
PU O3X APU sing 82 n n 
O2X HO2U APU sing 83 n n 
O3X HO3U APU sing 84 n n 
#
_atom_sites.entry_id                     1DTP 
_atom_sites.fract_transf_matrix[1][1]    0.017953 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003653 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.022779 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013809 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 APU A 1 200 200 APU APU . 
C 3 HOH A 1 201 201 HOH HOH . 
C 3 HOH A 2 202 202 HOH HOH . 
C 3 HOH A 3 203 203 HOH HOH . 
C 3 HOH A 4 204 204 HOH HOH . 
C 3 HOH A 5 205 205 HOH HOH . 
C 3 HOH A 6 206 206 HOH HOH . 
C 3 HOH A 7 207 207 HOH HOH . 
C 3 HOH A 8 208 208 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA APU . . . B 2 -1.013 4.385 44.84 1 38.14 ? PA APU 200 A 1 
HETATM 2 O O1A APU . . . B 2 -0.911 5.041 43.543 1 42.9 ? O1A APU 200 A 1 
HETATM 3 O O2A APU . . . B 2 -2.057 3.377 45.075 1 40.05 ? O2A APU 200 A 1 
HETATM 4 O O5B APU . . . B 2 -0.483 3.998 49.971 1 51.42 ? O5B APU 200 A 1 
HETATM 5 C C5B APU . . . B 2 -1.687 4.776 49.69 1 44.6 ? C5B APU 200 A 1 
HETATM 6 C C4B APU . . . B 2 -2.056 4.963 48.2 1 43.3 ? C4B APU 200 A 1 
HETATM 7 O O4B APU . . . B 2 -2.94 6.1 48.258 1 41.8 ? O4B APU 200 A 1 
HETATM 8 C C3B APU . . . B 2 -0.896 5.432 47.3 1 42.44 ? C3B APU 200 A 1 
HETATM 9 O O3B APU . . . B 2 -1.149 5.537 45.904 1 38.11 ? O3B APU 200 A 1 
HETATM 10 C C2B APU . . . B 2 -0.745 6.878 47.749 1 43.93 ? C2B APU 200 A 1 
HETATM 11 O O2B APU . . . B 2 0.109 7.621 46.806 1 47.89 ? O2B APU 200 A 1 
HETATM 12 C C1B APU . . . B 2 -2.232 7.288 47.871 1 41.42 ? C1B APU 200 A 1 
HETATM 13 N N9A APU . . . B 2 -2.56 8.552 48.635 1 43 ? N9A APU 200 A 1 
HETATM 14 C C8A APU . . . B 2 -2.947 9.746 48.04 1 43.53 ? C8A APU 200 A 1 
HETATM 15 N N7A APU . . . B 2 -3.392 10.685 48.852 1 42.58 ? N7A APU 200 A 1 
HETATM 16 C C5A APU . . . B 2 -3.102 10.137 50.106 1 44.08 ? C5A APU 200 A 1 
HETATM 17 C C6A APU . . . B 2 -3.13 10.705 51.383 1 39.1 ? C6A APU 200 A 1 
HETATM 18 N N6A APU . . . B 2 -3.219 12.012 51.515 1 35.91 ? N6A APU 200 A 1 
HETATM 19 N N1A APU . . . B 2 -2.991 9.88 52.432 1 35.54 ? N1A APU 200 A 1 
HETATM 20 C C2A APU . . . B 2 -2.63 8.613 52.234 1 34.65 ? C2A APU 200 A 1 
HETATM 21 N N3A APU . . . B 2 -2.326 8.035 51.082 1 38.18 ? N3A APU 200 A 1 
HETATM 22 C C4A APU . . . B 2 -2.644 8.828 50.015 1 43.26 ? C4A APU 200 A 1 
HETATM 23 N N1U APU . . . B 2 3.468 2.921 47.651 1 35.03 ? N1U APU 200 A 1 
HETATM 24 C C2U APU . . . B 2 4.619 2.396 48.181 1 34 ? C2U APU 200 A 1 
HETATM 25 O O2U APU . . . B 2 4.81 1.175 48.39 1 32.33 ? O2U APU 200 A 1 
HETATM 26 N N3U APU . . . B 2 5.593 3.374 48.453 1 34.47 ? N3U APU 200 A 1 
HETATM 27 C C4U APU . . . B 2 5.449 4.733 48.366 1 31.29 ? C4U APU 200 A 1 
HETATM 28 O O4U APU . . . B 2 6.294 5.419 48.907 1 31.66 ? O4U APU 200 A 1 
HETATM 29 C C5U APU . . . B 2 4.287 5.178 47.669 1 29.42 ? C5U APU 200 A 1 
HETATM 30 C C6U APU . . . B 2 3.345 4.27 47.341 1 33.19 ? C6U APU 200 A 1 
HETATM 31 C C1D APU . . . B 2 2.665 1.903 47.042 1 36.13 ? C1D APU 200 A 1 
HETATM 32 C C2D APU . . . B 2 1.344 1.768 47.685 1 37.9 ? C2D APU 200 A 1 
HETATM 33 O O2D APU . . . B 2 1.576 0.879 48.769 1 39.36 ? O2D APU 200 A 1 
HETATM 34 C C3D APU . . . B 2 0.563 1.074 46.563 1 38.39 ? C3D APU 200 A 1 
HETATM 35 O O3D APU . . . B 2 0.595 -0.359 46.714 1 41.94 ? O3D APU 200 A 1 
HETATM 36 C C4D APU . . . B 2 1.317 1.519 45.279 1 38.54 ? C4D APU 200 A 1 
HETATM 37 O O4D APU . . . B 2 2.578 2.089 45.65 1 33.38 ? O4D APU 200 A 1 
HETATM 38 O O5D APU . . . B 2 0.339 3.748 45.012 1 37.15 ? O5D APU 200 A 1 
HETATM 39 C C5D APU . . . B 2 0.578 2.538 44.364 1 35.36 ? C5D APU 200 A 1 
HETATM 40 P PU APU . . . B 2 -0.675 -1.24 46.188 1 46.74 ? PU APU 200 A 1 
HETATM 41 O O1X APU . . . B 2 -0.963 -0.792 44.702 1 49.21 ? O1X APU 200 A 1 
HETATM 42 O O2X APU . . . B 2 -1.942 -0.883 46.872 1 42.97 ? O2X APU 200 A 1 
HETATM 43 O O3X APU . . . B 2 -0.255 -2.663 46.083 1 49.64 ? O3X APU 200 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           252 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           43 
#