data_1DUI # _model_server_result.job_id 12xBcw5TZWT-EUAeckzhAg _model_server_result.datetime_utc '2024-11-22 02:12:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1dui # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":288}' # _entry.id 1DUI # _exptl.entry_id 1DUI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 166.155 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIISOPROPYL PHOSPHONATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1DUI _cell.length_a 46.289 _cell.length_b 58.527 _cell.length_c 85.168 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DUI _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 3 A CYS 3 1_555 A SG CYS 197 A CYS 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? covale ? covale1 A OG SER 212 A SER 221 1_555 C P DFP . A DFP 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.587 ? metalc ? metalc1 A O GLY 160 A GLY 169 1_555 B NA NA . A NA 297 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.964 ? metalc ? metalc2 A O GLU 186 A GLU 195 1_555 B NA NA . A NA 297 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.983 ? metalc ? metalc3 A OD1 ASP 188 A ASP 197 1_555 B NA NA . A NA 297 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.865 ? metalc ? metalc4 B NA NA . A NA 297 1_555 D O HOH . A HOH 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? # _chem_comp.formula 'C6 H15 O3 P' _chem_comp.formula_weight 166.155 _chem_comp.id DFP _chem_comp.mon_nstd_flag . _chem_comp.name 'DIISOPROPYL PHOSPHONATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 DFP sing 83 n n C1 C3 DFP sing 84 n n C1 O1P DFP sing 85 n n C1 H1 DFP sing 86 n n C2 H21 DFP sing 87 n n C2 H22 DFP sing 88 n n C2 H23 DFP sing 89 n n C3 H31 DFP sing 90 n n C3 H32 DFP sing 91 n n C3 H33 DFP sing 92 n n C1' C2' DFP sing 93 n n C1' C3' DFP sing 94 n n C1' O2P DFP sing 95 n n C1' H1' DFP sing 96 n n C2' "H2'1" DFP sing 97 n n C2' "H2'2" DFP sing 98 n n C2' "H2'3" DFP sing 99 n n C3' "H3'1" DFP sing 100 n n C3' "H3'2" DFP sing 101 n n C3' "H3'3" DFP sing 102 n n P O1P DFP sing 103 n n P O2P DFP sing 104 n n P O3P DFP doub 105 n n HP1 P DFP sing 106 n n # _atom_sites.entry_id 1DUI _atom_sites.fract_transf_matrix[1][1] 0.021603 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017086 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011741 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 297 297 NA NA . C 3 DFP A 1 288 288 DFP DFP . D 4 HOH A 1 301 301 HOH WAT . D 4 HOH A 2 302 302 HOH WAT . D 4 HOH A 3 303 303 HOH WAT . D 4 HOH A 4 304 304 HOH WAT . D 4 HOH A 5 305 305 HOH WAT . D 4 HOH A 6 306 306 HOH WAT . D 4 HOH A 7 307 307 HOH WAT . D 4 HOH A 8 308 308 HOH WAT . D 4 HOH A 9 309 309 HOH WAT . D 4 HOH A 10 310 310 HOH WAT . D 4 HOH A 11 311 311 HOH WAT . D 4 HOH A 12 312 312 HOH WAT . D 4 HOH A 13 313 313 HOH WAT . D 4 HOH A 14 314 314 HOH WAT . D 4 HOH A 15 315 315 HOH WAT . D 4 HOH A 16 317 317 HOH WAT . D 4 HOH A 17 318 318 HOH WAT . D 4 HOH A 18 319 319 HOH WAT . D 4 HOH A 19 320 320 HOH WAT . D 4 HOH A 20 321 321 HOH WAT . D 4 HOH A 21 322 322 HOH WAT . D 4 HOH A 22 324 324 HOH WAT . D 4 HOH A 23 325 325 HOH WAT . D 4 HOH A 24 326 326 HOH WAT . D 4 HOH A 25 328 328 HOH WAT . D 4 HOH A 26 331 331 HOH WAT . D 4 HOH A 27 332 332 HOH WAT . D 4 HOH A 28 333 333 HOH WAT . D 4 HOH A 29 334 334 HOH WAT . D 4 HOH A 30 335 335 HOH WAT . D 4 HOH A 31 336 336 HOH WAT . D 4 HOH A 32 337 337 HOH WAT . D 4 HOH A 33 338 338 HOH WAT . D 4 HOH A 34 339 339 HOH WAT . D 4 HOH A 35 340 340 HOH WAT . D 4 HOH A 36 341 341 HOH WAT . D 4 HOH A 37 342 342 HOH WAT . D 4 HOH A 38 343 343 HOH WAT . D 4 HOH A 39 344 344 HOH WAT . D 4 HOH A 40 345 345 HOH WAT . D 4 HOH A 41 346 346 HOH WAT . D 4 HOH A 42 347 347 HOH WAT . D 4 HOH A 43 348 348 HOH WAT . D 4 HOH A 44 349 349 HOH WAT . D 4 HOH A 45 350 350 HOH WAT . D 4 HOH A 46 351 351 HOH WAT . D 4 HOH A 47 352 352 HOH WAT . D 4 HOH A 48 353 353 HOH WAT . D 4 HOH A 49 354 354 HOH WAT . D 4 HOH A 50 355 355 HOH WAT . D 4 HOH A 51 356 356 HOH WAT . D 4 HOH A 52 357 357 HOH WAT . D 4 HOH A 53 358 358 HOH WAT . D 4 HOH A 54 359 359 HOH WAT . D 4 HOH A 55 360 360 HOH WAT . D 4 HOH A 56 363 363 HOH WAT . D 4 HOH A 57 365 365 HOH WAT . D 4 HOH A 58 367 367 HOH WAT . D 4 HOH A 59 368 368 HOH WAT . D 4 HOH A 60 371 371 HOH WAT . D 4 HOH A 61 372 372 HOH WAT . D 4 HOH A 62 373 373 HOH WAT . D 4 HOH A 63 375 375 HOH WAT . D 4 HOH A 64 377 377 HOH WAT . D 4 HOH A 65 379 379 HOH WAT . D 4 HOH A 66 381 381 HOH WAT . D 4 HOH A 67 382 382 HOH WAT . D 4 HOH A 68 384 384 HOH WAT . D 4 HOH A 69 386 386 HOH WAT . D 4 HOH A 70 387 387 HOH WAT . D 4 HOH A 71 389 389 HOH WAT . D 4 HOH A 72 392 392 HOH WAT . D 4 HOH A 73 397 397 HOH WAT . D 4 HOH A 74 398 398 HOH WAT . D 4 HOH A 75 399 399 HOH WAT . D 4 HOH A 76 400 400 HOH WAT . D 4 HOH A 77 401 401 HOH WAT . D 4 HOH A 78 402 402 HOH WAT . D 4 HOH A 79 403 403 HOH WAT . D 4 HOH A 80 405 405 HOH WAT . D 4 HOH A 81 408 408 HOH WAT . D 4 HOH A 82 409 409 HOH WAT . D 4 HOH A 83 411 411 HOH WAT . D 4 HOH A 84 413 413 HOH WAT . D 4 HOH A 85 414 414 HOH WAT . D 4 HOH A 86 415 415 HOH WAT . D 4 HOH A 87 417 417 HOH WAT . D 4 HOH A 88 422 422 HOH WAT . D 4 HOH A 89 428 428 HOH WAT . D 4 HOH A 90 432 432 HOH WAT . D 4 HOH A 91 440 440 HOH WAT . D 4 HOH A 92 441 441 HOH WAT . D 4 HOH A 93 445 445 HOH WAT . D 4 HOH A 94 501 501 HOH WAT . D 4 HOH A 95 502 502 HOH WAT . D 4 HOH A 96 503 503 HOH WAT . D 4 HOH A 97 504 504 HOH WAT . D 4 HOH A 98 505 505 HOH WAT . D 4 HOH A 99 506 506 HOH WAT . D 4 HOH A 100 507 507 HOH WAT . D 4 HOH A 101 508 508 HOH WAT . D 4 HOH A 102 509 509 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DFP . . . C 3 20.09 12.162 23.639 1 8.01 ? C1 DFP 288 A 1 HETATM 2 C C2 DFP . . . C 3 20.534 13.48 23.994 1 9.83 ? C2 DFP 288 A 1 HETATM 3 C C3 DFP . . . C 3 21.235 11.343 23.791 1 11.85 ? C3 DFP 288 A 1 HETATM 4 P P DFP . . . C 3 18.264 11.825 21.939 1 14.49 ? P DFP 288 A 1 HETATM 5 O O1P DFP . . . C 3 19.761 12.066 22.27 1 5.79 ? O1P DFP 288 A 1 HETATM 6 O O2P DFP . . . C 3 17.565 11.032 22.708 1 7.65 ? O2P DFP 288 A 1 HETATM 7 O O3P DFP . . . C 3 18.143 11.533 20.708 1 6.9 ? O3P DFP 288 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 359 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 7 #