data_1DUO
#
_model_server_result.job_id            Y_AS1MEOR_i0zTVBHRP7PQ 
_model_server_result.datetime_utc      '2024-11-22 09:51:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1duo 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":154}' 
#
_entry.id    1DUO 
#
_exptl.entry_id    1DUO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1DUO 
_cell.length_a            40.161 
_cell.length_b            49.033 
_cell.length_c            79.24 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1DUO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B FE HEM . A HEM 154 1_555 C N3 1MZ . A 1MZ 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? 
metalc ? metalc2 B FE HEM . A HEM 154 1_555 D O HOH . A HOH 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 129 n n 
CHA C4D HEM doub 130 n n 
CHA HHA HEM sing 131 n n 
CHB C4A HEM sing 132 n n 
CHB C1B HEM doub 133 n n 
CHB HHB HEM sing 134 n n 
CHC C4B HEM sing 135 n n 
CHC C1C HEM doub 136 n n 
CHC HHC HEM sing 137 n n 
CHD C4C HEM doub 138 n n 
CHD C1D HEM sing 139 n n 
CHD HHD HEM sing 140 n n 
C1A C2A HEM doub 141 n y 
C1A NA HEM sing 142 n y 
C2A C3A HEM sing 143 n y 
C2A CAA HEM sing 144 n n 
C3A C4A HEM doub 145 n y 
C3A CMA HEM sing 146 n n 
C4A NA HEM sing 147 n y 
CMA HMA HEM sing 148 n n 
CMA HMAA HEM sing 149 n n 
CMA HMAB HEM sing 150 n n 
CAA CBA HEM sing 151 n n 
CAA HAA HEM sing 152 n n 
CAA HAAA HEM sing 153 n n 
CBA CGA HEM sing 154 n n 
CBA HBA HEM sing 155 n n 
CBA HBAA HEM sing 156 n n 
CGA O1A HEM doub 157 n n 
CGA O2A HEM sing 158 n n 
C1B C2B HEM sing 159 n n 
C1B NB HEM sing 160 n n 
C2B C3B HEM doub 161 n n 
C2B CMB HEM sing 162 n n 
C3B C4B HEM sing 163 n n 
C3B CAB HEM sing 164 n n 
C4B NB HEM doub 165 n n 
CMB HMB HEM sing 166 n n 
CMB HMBA HEM sing 167 n n 
CMB HMBB HEM sing 168 n n 
CAB CBB HEM doub 169 n n 
CAB HAB HEM sing 170 n n 
CBB HBB HEM sing 171 n n 
CBB HBBA HEM sing 172 n n 
C1C C2C HEM sing 173 n y 
C1C NC HEM sing 174 n y 
C2C C3C HEM doub 175 n y 
C2C CMC HEM sing 176 n n 
C3C C4C HEM sing 177 n y 
C3C CAC HEM sing 178 n n 
C4C NC HEM sing 179 n y 
CMC HMC HEM sing 180 n n 
CMC HMCA HEM sing 181 n n 
CMC HMCB HEM sing 182 n n 
CAC CBC HEM doub 183 n n 
CAC HAC HEM sing 184 n n 
CBC HBC HEM sing 185 n n 
CBC HBCA HEM sing 186 n n 
C1D C2D HEM sing 187 n n 
C1D ND HEM doub 188 n n 
C2D C3D HEM doub 189 n n 
C2D CMD HEM sing 190 n n 
C3D C4D HEM sing 191 n n 
C3D CAD HEM sing 192 n n 
C4D ND HEM sing 193 n n 
CMD HMD HEM sing 194 n n 
CMD HMDA HEM sing 195 n n 
CMD HMDB HEM sing 196 n n 
CAD CBD HEM sing 197 n n 
CAD HAD HEM sing 198 n n 
CAD HADA HEM sing 199 n n 
CBD CGD HEM sing 200 n n 
CBD HBD HEM sing 201 n n 
CBD HBDA HEM sing 202 n n 
CGD O1D HEM doub 203 n n 
CGD O2D HEM sing 204 n n 
O2A H2A HEM sing 205 n n 
O2D H2D HEM sing 206 n n 
FE NA HEM sing 207 n n 
FE NB HEM sing 208 n n 
FE NC HEM sing 209 n n 
FE ND HEM sing 210 n n 
#
_atom_sites.entry_id                     1DUO 
_atom_sites.fract_transf_matrix[1][1]    0.0249 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020394 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01262 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 154 0 HEM HEM . 
C 3 1MZ A 1 155 0 1MZ 1IM . 
D 4 HOH A 1 156 0 HOH WAT . 
D 4 HOH A 2 157 0 HOH WAT . 
D 4 HOH A 3 158 0 HOH WAT . 
D 4 HOH A 4 159 0 HOH WAT . 
D 4 HOH A 5 160 0 HOH WAT . 
D 4 HOH A 6 161 0 HOH WAT . 
D 4 HOH A 7 162 0 HOH WAT . 
D 4 HOH A 8 163 0 HOH WAT . 
D 4 HOH A 9 164 0 HOH WAT . 
D 4 HOH A 10 165 0 HOH WAT . 
D 4 HOH A 11 166 0 HOH WAT . 
D 4 HOH A 12 167 0 HOH WAT . 
D 4 HOH A 13 168 0 HOH WAT . 
D 4 HOH A 14 169 0 HOH WAT . 
D 4 HOH A 15 170 0 HOH WAT . 
D 4 HOH A 16 171 0 HOH WAT . 
D 4 HOH A 17 172 0 HOH WAT . 
D 4 HOH A 18 173 0 HOH WAT . 
D 4 HOH A 19 174 0 HOH WAT . 
D 4 HOH A 20 175 0 HOH WAT . 
D 4 HOH A 21 176 0 HOH WAT . 
D 4 HOH A 22 177 0 HOH WAT . 
D 4 HOH A 23 178 0 HOH WAT . 
D 4 HOH A 24 179 0 HOH WAT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . B 2 -5.873 33.574 -9.322 1 7.85 ? CHA HEM 154 A 1 
HETATM 2 C CHB HEM . . . B 2 -4.366 31.376 -5.215 1 2.2 ? CHB HEM 154 A 1 
HETATM 3 C CHC HEM . . . B 2 -4.195 27.24 -7.626 1 7.27 ? CHC HEM 154 A 1 
HETATM 4 C CHD HEM . . . B 2 -6.001 29.309 -11.575 1 8.18 ? CHD HEM 154 A 1 
HETATM 5 C C1A HEM . . . B 2 -5.46 33.229 -8.048 1 4.91 ? C1A HEM 154 A 1 
HETATM 6 C C2A HEM . . . B 2 -5.262 34.216 -6.989 1 22.57 ? C2A HEM 154 A 1 
HETATM 7 C C3A HEM . . . B 2 -4.845 33.607 -5.89 1 7.08 ? C3A HEM 154 A 1 
HETATM 8 C C4A HEM . . . B 2 -4.745 32.244 -6.179 1 5.5 ? C4A HEM 154 A 1 
HETATM 9 C CMA HEM . . . B 2 -4.615 34.132 -4.441 1 13.55 ? CMA HEM 154 A 1 
HETATM 10 C CAA HEM . . . B 2 -5.64 35.691 -7.135 1 28.73 ? CAA HEM 154 A 1 
HETATM 11 C CBA HEM . . . B 2 -7.119 36.098 -6.858 1 74.54 ? CBA HEM 154 A 1 
HETATM 12 C CGA HEM . . . B 2 -8.187 35.281 -7.534 1 35.95 ? CGA HEM 154 A 1 
HETATM 13 O O1A HEM . . . B 2 -8.217 35.338 -8.798 1 37.92 ? O1A HEM 154 A 1 
HETATM 14 O O2A HEM . . . B 2 -8.919 34.596 -6.769 1 32.75 ? O2A HEM 154 A 1 
HETATM 15 C C1B HEM . . . B 2 -4.251 30.103 -5.551 1 6.31 ? C1B HEM 154 A 1 
HETATM 16 C C2B HEM . . . B 2 -3.859 29.099 -4.592 1 9.66 ? C2B HEM 154 A 1 
HETATM 17 C C3B HEM . . . B 2 -3.809 27.963 -5.248 1 4.78 ? C3B HEM 154 A 1 
HETATM 18 C C4B HEM . . . B 2 -4.171 28.226 -6.656 1 2.57 ? C4B HEM 154 A 1 
HETATM 19 C CMB HEM . . . B 2 -3.692 29.441 -3.114 1 17.44 ? CMB HEM 154 A 1 
HETATM 20 C CAB HEM . . . B 2 -3.489 26.549 -4.733 1 44.67 ? CAB HEM 154 A 1 
HETATM 21 C CBB HEM . . . B 2 -2.61 26.349 -3.751 1 19.79 ? CBB HEM 154 A 1 
HETATM 22 C C1C HEM . . . B 2 -4.676 27.461 -8.86 1 28.05 ? C1C HEM 154 A 1 
HETATM 23 C C2C HEM . . . B 2 -4.782 26.416 -9.809 1 8.53 ? C2C HEM 154 A 1 
HETATM 24 C C3C HEM . . . B 2 -5.311 26.954 -10.959 1 13.01 ? C3C HEM 154 A 1 
HETATM 25 C C4C HEM . . . B 2 -5.524 28.366 -10.691 1 20.17 ? C4C HEM 154 A 1 
HETATM 26 C CMC HEM . . . B 2 -4.371 24.971 -9.44 1 14.22 ? CMC HEM 154 A 1 
HETATM 27 C CAC HEM . . . B 2 -5.807 26.218 -12.242 1 24.41 ? CAC HEM 154 A 1 
HETATM 28 C CBC HEM . . . B 2 -5.139 25.974 -13.35 1 21.79 ? CBC HEM 154 A 1 
HETATM 29 C C1D HEM . . . B 2 -6.006 30.645 -11.282 1 15.68 ? C1D HEM 154 A 1 
HETATM 30 C C2D HEM . . . B 2 -6.301 31.652 -12.268 1 38.12 ? C2D HEM 154 A 1 
HETATM 31 C C3D HEM . . . B 2 -6.355 32.803 -11.63 1 27.35 ? C3D HEM 154 A 1 
HETATM 32 C C4D HEM . . . B 2 -5.996 32.598 -10.265 1 15.94 ? C4D HEM 154 A 1 
HETATM 33 C CMD HEM . . . B 2 -6.579 31.338 -13.748 1 19.64 ? CMD HEM 154 A 1 
HETATM 34 C CAD HEM . . . B 2 -6.46 34.205 -12.191 1 21.56 ? CAD HEM 154 A 1 
HETATM 35 C CBD HEM . . . B 2 -5.19 35.007 -11.868 1 73.4 ? CBD HEM 154 A 1 
HETATM 36 C CGD HEM . . . B 2 -4.945 36.167 -12.796 1 39.92 ? CGD HEM 154 A 1 
HETATM 37 O O1D HEM . . . B 2 -5.438 36.013 -13.953 1 37.38 ? O1D HEM 154 A 1 
HETATM 38 O O2D HEM . . . B 2 -4.455 37.237 -12.301 1 77.11 ? O2D HEM 154 A 1 
HETATM 39 N NA HEM . . . B 2 -5.051 31.986 -7.552 1 10.02 ? NA HEM 154 A 1 
HETATM 40 N NB HEM . . . B 2 -4.431 29.565 -6.834 1 8.66 ? NB HEM 154 A 1 
HETATM 41 N NC HEM . . . B 2 -5.073 28.68 -9.407 1 10.82 ? NC HEM 154 A 1 
HETATM 42 N ND HEM . . . B 2 -5.802 31.264 -10.038 1 12.32 ? ND HEM 154 A 1 
HETATM 43 FE FE HEM . . . B 2 -5.075 30.423 -8.499 1 16.61 ? FE HEM 154 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           294 
_model_server_stats.encode_time_ms          13 
_model_server_stats.element_count           43 
#