data_1DUT # _model_server_result.job_id yLRBO9cjQ91dr9QXjFgabg _model_server_result.datetime_utc '2024-11-14 18:05:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1dut # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":134}' # _entry.id 1DUT # _exptl.entry_id 1DUT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1DUT _cell.length_a 79.8 _cell.length_b 79.8 _cell.length_c 86.95 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DUT _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 63' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA,PQS trimeric 3 author_and_software_defined_assembly 1 PISA,PQS trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1,2,3 B,D,F 2 1,4,5 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 4 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 39.9 69.108827 0 5 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -39.9 69.108827 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 64 A ASP 64 1_555 C MG MG . A MG 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? metalc ? metalc2 A OD2 ASP 64 A ASP 64 2_555 C MG MG . A MG 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? metalc ? metalc3 A OD2 ASP 64 A ASP 64 3_555 C MG MG . A MG 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? metalc ? metalc4 C MG MG . A MG 134 1_555 E O HOH . A HOH 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.702 ? metalc ? metalc5 C MG MG . A MG 134 1_555 E O HOH . A HOH 147 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.702 ? metalc ? metalc6 C MG MG . A MG 134 1_555 E O HOH . A HOH 147 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.702 ? metalc ? metalc7 B OD2 ASP 64 B ASP 64 1_555 D MG MG . B MG 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.775 ? metalc ? metalc8 B OD2 ASP 64 B ASP 64 3_565 D MG MG . B MG 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.703 ? metalc ? metalc9 B OD2 ASP 64 B ASP 64 2_665 D MG MG . B MG 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.725 ? metalc ? metalc10 D MG MG . B MG 134 1_555 F O HOH . B HOH 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.61 ? metalc ? metalc11 D MG MG . B MG 134 1_555 F O HOH . B HOH 143 2_665 ? ? ? ? ? ? ? ? ? ? ? ? 1.499 ? metalc ? metalc12 D MG MG . B MG 134 1_555 F O HOH . B HOH 143 3_565 ? ? ? ? ? ? ? ? ? ? ? ? 1.601 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1DUT _atom_sites.fract_transf_matrix[1][1] 0.012531 _atom_sites.fract_transf_matrix[1][2] 0.007235 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01447 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011501 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 134 1 MG MG . D 2 MG B 1 134 1 MG MG . E 3 HOH A 1 135 1 HOH HOH . E 3 HOH A 2 136 2 HOH HOH . E 3 HOH A 3 137 3 HOH HOH . E 3 HOH A 4 138 4 HOH HOH . E 3 HOH A 5 139 5 HOH HOH . E 3 HOH A 6 140 6 HOH HOH . E 3 HOH A 7 141 7 HOH HOH . E 3 HOH A 8 142 8 HOH HOH . E 3 HOH A 9 143 9 HOH HOH . E 3 HOH A 10 144 10 HOH HOH . E 3 HOH A 11 145 11 HOH HOH . E 3 HOH A 12 146 12 HOH HOH . E 3 HOH A 13 147 13 HOH HOH . E 3 HOH A 14 148 14 HOH HOH . E 3 HOH A 15 149 15 HOH HOH . E 3 HOH A 16 150 16 HOH HOH . E 3 HOH A 17 151 17 HOH HOH . E 3 HOH A 18 152 18 HOH HOH . E 3 HOH A 19 153 19 HOH HOH . E 3 HOH A 20 154 20 HOH HOH . E 3 HOH A 21 155 21 HOH HOH . E 3 HOH A 22 156 23 HOH HOH . E 3 HOH A 23 157 24 HOH HOH . E 3 HOH A 24 158 25 HOH HOH . E 3 HOH A 25 159 26 HOH HOH . E 3 HOH A 26 160 27 HOH HOH . E 3 HOH A 27 161 28 HOH HOH . E 3 HOH A 28 162 29 HOH HOH . E 3 HOH A 29 163 30 HOH HOH . E 3 HOH A 30 164 31 HOH HOH . E 3 HOH A 31 165 32 HOH HOH . E 3 HOH A 32 166 33 HOH HOH . E 3 HOH A 33 167 34 HOH HOH . E 3 HOH A 34 168 35 HOH HOH . E 3 HOH A 35 169 36 HOH HOH . E 3 HOH A 36 170 37 HOH HOH . E 3 HOH A 37 171 38 HOH HOH . E 3 HOH A 38 172 39 HOH HOH . E 3 HOH A 39 173 40 HOH HOH . E 3 HOH A 40 174 41 HOH HOH . E 3 HOH A 41 175 58 HOH HOH . E 3 HOH A 42 176 60 HOH HOH . E 3 HOH A 43 177 61 HOH HOH . E 3 HOH A 44 178 62 HOH HOH . E 3 HOH A 45 179 64 HOH HOH . E 3 HOH A 46 180 65 HOH HOH . E 3 HOH A 47 181 66 HOH HOH . E 3 HOH A 48 182 69 HOH HOH . E 3 HOH A 49 183 70 HOH HOH . F 3 HOH B 1 135 22 HOH HOH . F 3 HOH B 2 136 42 HOH HOH . F 3 HOH B 3 137 43 HOH HOH . F 3 HOH B 4 138 44 HOH HOH . F 3 HOH B 5 139 45 HOH HOH . F 3 HOH B 6 140 46 HOH HOH . F 3 HOH B 7 141 47 HOH HOH . F 3 HOH B 8 142 48 HOH HOH . F 3 HOH B 9 143 49 HOH HOH . F 3 HOH B 10 144 50 HOH HOH . F 3 HOH B 11 145 51 HOH HOH . F 3 HOH B 12 146 52 HOH HOH . F 3 HOH B 13 147 53 HOH HOH . F 3 HOH B 14 148 54 HOH HOH . F 3 HOH B 15 149 55 HOH HOH . F 3 HOH B 16 150 56 HOH HOH . F 3 HOH B 17 151 57 HOH HOH . F 3 HOH B 18 152 59 HOH HOH . F 3 HOH B 19 153 63 HOH HOH . F 3 HOH B 20 154 67 HOH HOH . F 3 HOH B 21 155 68 HOH HOH . F 3 HOH B 22 156 71 HOH HOH . F 3 HOH B 23 157 72 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 0 _atom_site.Cartn_y 0 _atom_site.Cartn_z 21.398 _atom_site.occupancy 0.33 _atom_site.B_iso_or_equiv 10.96 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 134 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #