data_1DV2 # _model_server_result.job_id W_1vni_AmupX3fByzmyN-A _model_server_result.datetime_utc '2024-11-15 00:56:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1dv2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1001}' # _entry.id 1DV2 # _exptl.entry_id 1DV2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1DV2 _cell.length_a 81.3 _cell.length_b 115.5 _cell.length_c 122.4 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DV2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 1DV2 _atom_sites.fract_transf_matrix[1][1] 0.0123 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008658 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00817 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ATP A 1 1000 1000 ATP ATP . D 2 ATP B 1 1001 1001 ATP ATP . E 3 HOH A 1 1206 1206 HOH HOH . E 3 HOH A 2 1207 1207 HOH HOH . E 3 HOH A 3 1210 1210 HOH HOH . E 3 HOH A 4 1211 1211 HOH HOH . E 3 HOH A 5 1213 1213 HOH HOH . E 3 HOH A 6 1217 1217 HOH HOH . E 3 HOH A 7 1219 1219 HOH HOH . E 3 HOH A 8 1221 1221 HOH HOH . E 3 HOH A 9 1224 1224 HOH HOH . E 3 HOH A 10 1227 1227 HOH HOH . E 3 HOH A 11 1228 1228 HOH HOH . E 3 HOH A 12 1229 1229 HOH HOH . E 3 HOH A 13 1230 1230 HOH HOH . E 3 HOH A 14 1231 1231 HOH HOH . E 3 HOH A 15 1233 1233 HOH HOH . E 3 HOH A 16 1235 1235 HOH HOH . E 3 HOH A 17 1236 1236 HOH HOH . E 3 HOH A 18 1237 1237 HOH HOH . E 3 HOH A 19 1239 1239 HOH HOH . E 3 HOH A 20 1240 1240 HOH HOH . E 3 HOH A 21 1241 1241 HOH HOH . E 3 HOH A 22 1242 1242 HOH HOH . E 3 HOH A 23 1243 1243 HOH HOH . E 3 HOH A 24 1244 1244 HOH HOH . E 3 HOH A 25 1245 1245 HOH HOH . E 3 HOH A 26 1246 1246 HOH HOH . E 3 HOH A 27 1247 1247 HOH HOH . E 3 HOH A 28 1248 1248 HOH HOH . E 3 HOH A 29 1249 1249 HOH HOH . E 3 HOH A 30 1250 1250 HOH HOH . E 3 HOH A 31 1251 1251 HOH HOH . E 3 HOH A 32 1252 1252 HOH HOH . E 3 HOH A 33 1253 1253 HOH HOH . E 3 HOH A 34 1254 1254 HOH HOH . E 3 HOH A 35 1255 1255 HOH HOH . E 3 HOH A 36 1266 1266 HOH HOH . E 3 HOH A 37 1270 1270 HOH HOH . E 3 HOH A 38 1271 1271 HOH HOH . E 3 HOH A 39 1272 1272 HOH HOH . E 3 HOH A 40 1273 1273 HOH HOH . E 3 HOH A 41 1274 1274 HOH HOH . E 3 HOH A 42 1275 1275 HOH HOH . E 3 HOH A 43 1276 1276 HOH HOH . E 3 HOH A 44 1277 1277 HOH HOH . E 3 HOH A 45 1278 1278 HOH HOH . E 3 HOH A 46 1279 1279 HOH HOH . E 3 HOH A 47 1280 1280 HOH HOH . E 3 HOH A 48 1281 1281 HOH HOH . E 3 HOH A 49 1282 1282 HOH HOH . E 3 HOH A 50 1283 1283 HOH HOH . E 3 HOH A 51 1284 1284 HOH HOH . E 3 HOH A 52 1285 1285 HOH HOH . E 3 HOH A 53 1286 1286 HOH HOH . E 3 HOH A 54 1287 1287 HOH HOH . E 3 HOH A 55 1288 1288 HOH HOH . E 3 HOH A 56 1289 1289 HOH HOH . E 3 HOH A 57 1290 1290 HOH HOH . E 3 HOH A 58 1291 1291 HOH HOH . E 3 HOH A 59 1292 1292 HOH HOH . E 3 HOH A 60 1293 1293 HOH HOH . E 3 HOH A 61 1294 1294 HOH HOH . E 3 HOH A 62 1295 1295 HOH HOH . E 3 HOH A 63 1296 1296 HOH HOH . E 3 HOH A 64 1297 1297 HOH HOH . E 3 HOH A 65 1298 1298 HOH HOH . E 3 HOH A 66 1299 1299 HOH HOH . E 3 HOH A 67 1300 1300 HOH HOH . E 3 HOH A 68 1301 1301 HOH HOH . E 3 HOH A 69 1302 1302 HOH HOH . E 3 HOH A 70 1305 1305 HOH HOH . E 3 HOH A 71 1309 1309 HOH HOH . E 3 HOH A 72 1312 1312 HOH HOH . E 3 HOH A 73 1313 1313 HOH HOH . E 3 HOH A 74 1314 1314 HOH HOH . E 3 HOH A 75 1320 1320 HOH HOH . E 3 HOH A 76 1321 1321 HOH HOH . E 3 HOH A 77 1322 1322 HOH HOH . E 3 HOH A 78 1323 1323 HOH HOH . E 3 HOH A 79 1324 1324 HOH HOH . E 3 HOH A 80 1327 1327 HOH HOH . E 3 HOH A 81 1328 1328 HOH HOH . E 3 HOH A 82 1329 1329 HOH HOH . F 3 HOH B 1 1200 1200 HOH HOH . F 3 HOH B 2 1201 1201 HOH HOH . F 3 HOH B 3 1202 1202 HOH HOH . F 3 HOH B 4 1203 1203 HOH HOH . F 3 HOH B 5 1204 1204 HOH HOH . F 3 HOH B 6 1205 1205 HOH HOH . F 3 HOH B 7 1208 1208 HOH HOH . F 3 HOH B 8 1209 1209 HOH HOH . F 3 HOH B 9 1212 1212 HOH HOH . F 3 HOH B 10 1214 1214 HOH HOH . F 3 HOH B 11 1215 1215 HOH HOH . F 3 HOH B 12 1216 1216 HOH HOH . F 3 HOH B 13 1218 1218 HOH HOH . F 3 HOH B 14 1220 1220 HOH HOH . F 3 HOH B 15 1222 1222 HOH HOH . F 3 HOH B 16 1223 1223 HOH HOH . F 3 HOH B 17 1225 1225 HOH HOH . F 3 HOH B 18 1226 1226 HOH HOH . F 3 HOH B 19 1232 1232 HOH HOH . F 3 HOH B 20 1234 1234 HOH HOH . F 3 HOH B 21 1238 1238 HOH HOH . F 3 HOH B 22 1256 1256 HOH HOH . F 3 HOH B 23 1257 1257 HOH HOH . F 3 HOH B 24 1258 1258 HOH HOH . F 3 HOH B 25 1259 1259 HOH HOH . F 3 HOH B 26 1260 1260 HOH HOH . F 3 HOH B 27 1261 1261 HOH HOH . F 3 HOH B 28 1262 1262 HOH HOH . F 3 HOH B 29 1263 1263 HOH HOH . F 3 HOH B 30 1264 1264 HOH HOH . F 3 HOH B 31 1265 1265 HOH HOH . F 3 HOH B 32 1267 1267 HOH HOH . F 3 HOH B 33 1268 1268 HOH HOH . F 3 HOH B 34 1269 1269 HOH HOH . F 3 HOH B 35 1303 1303 HOH HOH . F 3 HOH B 36 1304 1304 HOH HOH . F 3 HOH B 37 1306 1306 HOH HOH . F 3 HOH B 38 1307 1307 HOH HOH . F 3 HOH B 39 1308 1308 HOH HOH . F 3 HOH B 40 1310 1310 HOH HOH . F 3 HOH B 41 1311 1311 HOH HOH . F 3 HOH B 42 1315 1315 HOH HOH . F 3 HOH B 43 1316 1316 HOH HOH . F 3 HOH B 44 1317 1317 HOH HOH . F 3 HOH B 45 1318 1318 HOH HOH . F 3 HOH B 46 1319 1319 HOH HOH . F 3 HOH B 47 1325 1325 HOH HOH . F 3 HOH B 48 1326 1326 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . D 2 -7.772 63.068 4.222 1 80 ? PG ATP 1001 B 1 HETATM 2 O O1G ATP . . . D 2 -6.77 63.835 3.385 1 100 ? O1G ATP 1001 B 1 HETATM 3 O O2G ATP . . . D 2 -7.889 63.729 5.555 1 70.88 ? O2G ATP 1001 B 1 HETATM 4 O O3G ATP . . . D 2 -7.345 61.625 4.404 1 96.48 ? O3G ATP 1001 B 1 HETATM 5 P PB ATP . . . D 2 -9.644 63.264 2.068 1 100 ? PB ATP 1001 B 1 HETATM 6 O O1B ATP . . . D 2 -10.381 64.506 1.766 1 41.2 ? O1B ATP 1001 B 1 HETATM 7 O O2B ATP . . . D 2 -8.566 63.047 1.072 1 76.07 ? O2B ATP 1001 B 1 HETATM 8 O O3B ATP . . . D 2 -9.162 63.142 3.551 1 100 ? O3B ATP 1001 B 1 HETATM 9 P PA ATP . . . D 2 -10.71 60.579 1.434 1 100 ? PA ATP 1001 B 1 HETATM 10 O O1A ATP . . . D 2 -10.893 60.643 -0.04 1 52.5 ? O1A ATP 1001 B 1 HETATM 11 O O2A ATP . . . D 2 -9.574 59.689 1.795 1 100 ? O2A ATP 1001 B 1 HETATM 12 O O3A ATP . . . D 2 -10.675 61.97 2.131 1 65.09 ? O3A ATP 1001 B 1 HETATM 13 O O5' ATP . . . D 2 -12.067 60.09 2.132 1 100 ? O5' ATP 1001 B 1 HETATM 14 C C5' ATP . . . D 2 -12.484 60.637 3.402 1 39.8 ? C5' ATP 1001 B 1 HETATM 15 C C4' ATP . . . D 2 -13.321 59.618 4.145 1 100 ? C4' ATP 1001 B 1 HETATM 16 O O4' ATP . . . D 2 -14.548 59.489 3.437 1 56.2 ? O4' ATP 1001 B 1 HETATM 17 C C3' ATP . . . D 2 -12.787 58.215 4.17 1 100 ? C3' ATP 1001 B 1 HETATM 18 O O3' ATP . . . D 2 -11.937 57.939 5.282 1 100 ? O3' ATP 1001 B 1 HETATM 19 C C2' ATP . . . D 2 -13.779 57.381 3.977 1 81.97 ? C2' ATP 1001 B 1 HETATM 20 O O2' ATP . . . D 2 -14.274 56.935 5.243 1 100 ? O2' ATP 1001 B 1 HETATM 21 C C1' ATP . . . D 2 -14.871 58.107 3.267 1 100 ? C1' ATP 1001 B 1 HETATM 22 N N9 ATP . . . D 2 -15.049 57.734 1.85 1 67.29 ? N9 ATP 1001 B 1 HETATM 23 C C8 ATP . . . D 2 -14.389 58.156 0.728 1 3.36 ? C8 ATP 1001 B 1 HETATM 24 N N7 ATP . . . D 2 -14.714 57.446 -0.37 1 31.32 ? N7 ATP 1001 B 1 HETATM 25 C C5 ATP . . . D 2 -15.698 56.559 0.073 1 61.66 ? C5 ATP 1001 B 1 HETATM 26 C C6 ATP . . . D 2 -16.479 55.565 -0.601 1 79.3 ? C6 ATP 1001 B 1 HETATM 27 N N6 ATP . . . D 2 -16.385 55.293 -1.91 1 49.39 ? N6 ATP 1001 B 1 HETATM 28 N N1 ATP . . . D 2 -17.346 54.875 0.199 1 39.3 ? N1 ATP 1001 B 1 HETATM 29 C C2 ATP . . . D 2 -17.443 55.166 1.53 1 61.82 ? C2 ATP 1001 B 1 HETATM 30 N N3 ATP . . . D 2 -16.771 56.035 2.22 1 45.87 ? N3 ATP 1001 B 1 HETATM 31 C C4 ATP . . . D 2 -15.901 56.716 1.435 1 19.23 ? C4 ATP 1001 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #