data_1DV8
#
_model_server_result.job_id            37_RFRvfp3Ja0p5wrQ7mJw 
_model_server_result.datetime_utc      '2024-11-16 22:33:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1dv8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1001}' 
#
_entry.id    1DV8 
#
_exptl.entry_id    1DV8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          91.29 
_cell.angle_gamma         90 
_cell.entry_id            1DV8 
_cell.length_a            113.72 
_cell.length_b            32.46 
_cell.length_c            40.82 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1DV8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 1 A CYS 153 1_555 A SG CYS 12 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 A SG CYS 29 A CYS 181 1_555 A SG CYS 124 A CYS 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf3 A SG CYS 102 A CYS 254 1_555 A SG CYS 116 A CYS 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
metalc ? metalc1 B CA CA . A CA 1001 1_555 A OD1 ASP 90 A ASP 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? 
metalc ? metalc2 B CA CA . A CA 1001 1_555 A OD1 ASP 63 A ASP 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.702 ? 
metalc ? metalc3 B CA CA . A CA 1001 1_555 A OD2 ASP 63 A ASP 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? 
metalc ? metalc4 B CA CA . A CA 1001 1_555 F O HOH . A HOH 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? 
metalc ? metalc5 B CA CA . A CA 1001 1_555 F O HOH . A HOH 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? 
metalc ? metalc6 B CA CA . A CA 1001 1_555 F O HOH . A HOH 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? 
metalc ? metalc7 B CA CA . A CA 1001 1_555 A O GLU 100 A GLU 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.528 ? 
metalc ? metalc8 B CA CA . A CA 1001 1_555 A OD1 ASP 101 A ASP 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? 
metalc ? metalc9 C CA CA . A CA 1002 1_555 A OE1 GLN 87 A GLN 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.669 ? 
metalc ? metalc10 C CA CA . A CA 1002 1_555 F O HOH . A HOH 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.791 ? 
metalc ? metalc11 C CA CA . A CA 1002 1_555 A OD1 ASP 89 A ASP 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? 
metalc ? metalc12 C CA CA . A CA 1002 1_555 A OE2 GLU 100 A GLU 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? 
metalc ? metalc13 C CA CA . A CA 1002 1_555 A OD1 ASN 112 A ASN 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? 
metalc ? metalc14 C CA CA . A CA 1002 1_555 A O ASP 113 A ASP 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? 
metalc ? metalc15 C CA CA . A CA 1002 1_555 A OD1 ASP 113 A ASP 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? 
metalc ? metalc16 C CA CA . A CA 1002 1_555 F O HOH . A HOH 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.021 ? 
metalc ? metalc17 D CA CA . A CA 1003 1_555 A O VAL 38 A VAL 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? 
metalc ? metalc18 D CA CA . A CA 1003 1_555 A OE1 GLU 44 A GLU 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? 
metalc ? metalc19 D CA CA . A CA 1003 1_555 A OE2 GLU 44 A GLU 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.737 ? 
metalc ? metalc20 D CA CA . A CA 1003 1_555 A OE1 GLU 125 A GLU 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.692 ? 
metalc ? metalc21 D CA CA . A CA 1003 1_555 F O HOH . A HOH 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? 
metalc ? metalc22 D CA CA . A CA 1003 1_555 F O HOH . A HOH 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? 
metalc ? metalc23 D CA CA . A CA 1003 1_555 A OE2 GLU 125 A GLU 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? 
metalc ? metalc24 D CA CA . A CA 1003 1_555 F O HOH . A HOH 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1DV8 
_atom_sites.fract_transf_matrix[1][1]    0.008794 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000198 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.030807 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.024504 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CA A 1 1001 1 CA CA . 
C 2 CA A 1 1002 2 CA CA . 
D 2 CA A 1 1003 3 CA CA . 
E 3 CL A 1 1004 4 CL CL . 
F 4 HOH A 1 1 1 HOH HOH . 
F 4 HOH A 2 2 2 HOH HOH . 
F 4 HOH A 3 3 3 HOH HOH . 
F 4 HOH A 4 4 4 HOH HOH . 
F 4 HOH A 5 5 5 HOH HOH . 
F 4 HOH A 6 6 6 HOH HOH . 
F 4 HOH A 7 7 7 HOH HOH . 
F 4 HOH A 8 8 8 HOH HOH . 
F 4 HOH A 9 9 9 HOH HOH . 
F 4 HOH A 10 10 10 HOH HOH . 
F 4 HOH A 11 11 11 HOH HOH . 
F 4 HOH A 12 12 12 HOH HOH . 
F 4 HOH A 13 13 13 HOH HOH . 
F 4 HOH A 14 14 14 HOH HOH . 
F 4 HOH A 15 15 15 HOH HOH . 
F 4 HOH A 16 16 16 HOH HOH . 
F 4 HOH A 17 17 17 HOH HOH . 
F 4 HOH A 18 18 18 HOH HOH . 
F 4 HOH A 19 19 19 HOH HOH . 
F 4 HOH A 20 20 20 HOH HOH . 
F 4 HOH A 21 21 21 HOH HOH . 
F 4 HOH A 22 22 22 HOH HOH . 
F 4 HOH A 23 23 23 HOH HOH . 
F 4 HOH A 24 24 24 HOH HOH . 
F 4 HOH A 25 25 25 HOH HOH . 
F 4 HOH A 26 26 26 HOH HOH . 
F 4 HOH A 27 27 27 HOH HOH . 
F 4 HOH A 28 28 28 HOH HOH . 
F 4 HOH A 29 29 29 HOH HOH . 
F 4 HOH A 30 30 30 HOH HOH . 
F 4 HOH A 31 31 31 HOH HOH . 
F 4 HOH A 32 32 32 HOH HOH . 
F 4 HOH A 33 33 33 HOH HOH . 
F 4 HOH A 34 34 34 HOH HOH . 
F 4 HOH A 35 35 35 HOH HOH . 
F 4 HOH A 36 36 36 HOH HOH . 
F 4 HOH A 37 37 37 HOH HOH . 
F 4 HOH A 38 38 38 HOH HOH . 
F 4 HOH A 39 39 39 HOH HOH . 
F 4 HOH A 40 40 40 HOH HOH . 
F 4 HOH A 41 41 41 HOH HOH . 
F 4 HOH A 42 42 42 HOH HOH . 
F 4 HOH A 43 43 43 HOH HOH . 
F 4 HOH A 44 44 44 HOH HOH . 
F 4 HOH A 45 45 45 HOH HOH . 
F 4 HOH A 46 46 46 HOH HOH . 
F 4 HOH A 47 47 47 HOH HOH . 
F 4 HOH A 48 48 48 HOH HOH . 
F 4 HOH A 49 49 49 HOH HOH . 
F 4 HOH A 50 50 50 HOH HOH . 
F 4 HOH A 51 51 51 HOH HOH . 
F 4 HOH A 52 52 52 HOH HOH . 
F 4 HOH A 53 53 53 HOH HOH . 
F 4 HOH A 54 54 54 HOH HOH . 
F 4 HOH A 55 55 55 HOH HOH . 
F 4 HOH A 56 56 56 HOH HOH . 
F 4 HOH A 57 57 57 HOH HOH . 
F 4 HOH A 58 58 58 HOH HOH . 
F 4 HOH A 59 59 59 HOH HOH . 
F 4 HOH A 60 60 60 HOH HOH . 
F 4 HOH A 61 61 61 HOH HOH . 
F 4 HOH A 62 62 62 HOH HOH . 
F 4 HOH A 63 63 63 HOH HOH . 
F 4 HOH A 64 64 64 HOH HOH . 
F 4 HOH A 65 65 65 HOH HOH . 
F 4 HOH A 66 66 66 HOH HOH . 
F 4 HOH A 67 67 67 HOH HOH . 
F 4 HOH A 68 68 68 HOH HOH . 
F 4 HOH A 69 69 69 HOH HOH . 
F 4 HOH A 70 70 70 HOH HOH . 
F 4 HOH A 71 71 71 HOH HOH . 
F 4 HOH A 72 72 72 HOH HOH . 
F 4 HOH A 73 73 73 HOH HOH . 
F 4 HOH A 74 74 74 HOH HOH . 
F 4 HOH A 75 75 75 HOH HOH . 
F 4 HOH A 76 76 76 HOH HOH . 
F 4 HOH A 77 77 77 HOH HOH . 
F 4 HOH A 78 78 78 HOH HOH . 
F 4 HOH A 79 79 79 HOH HOH . 
F 4 HOH A 80 80 80 HOH HOH . 
F 4 HOH A 81 81 81 HOH HOH . 
F 4 HOH A 82 82 82 HOH HOH . 
F 4 HOH A 83 83 83 HOH HOH . 
F 4 HOH A 84 84 84 HOH HOH . 
F 4 HOH A 85 85 85 HOH HOH . 
F 4 HOH A 86 86 86 HOH HOH . 
F 4 HOH A 87 87 87 HOH HOH . 
F 4 HOH A 88 88 88 HOH HOH . 
F 4 HOH A 89 89 89 HOH HOH . 
F 4 HOH A 90 90 90 HOH HOH . 
F 4 HOH A 91 91 91 HOH HOH . 
F 4 HOH A 92 92 92 HOH HOH . 
F 4 HOH A 93 93 93 HOH HOH . 
F 4 HOH A 94 94 94 HOH HOH . 
F 4 HOH A 95 95 95 HOH HOH . 
F 4 HOH A 96 96 96 HOH HOH . 
F 4 HOH A 97 97 97 HOH HOH . 
F 4 HOH A 98 98 98 HOH HOH . 
F 4 HOH A 99 99 99 HOH HOH . 
F 4 HOH A 100 100 100 HOH HOH . 
F 4 HOH A 101 101 101 HOH HOH . 
F 4 HOH A 102 102 102 HOH HOH . 
F 4 HOH A 103 103 103 HOH HOH . 
F 4 HOH A 104 104 104 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         B 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               -0.049 
_atom_site.Cartn_y               -0.102 
_atom_site.Cartn_z               3.813 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        14.75 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           1001 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              5 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           1 
#