data_1DVB # _model_server_result.job_id AsfurSY-DeeEKFW9v5LblA _model_server_result.datetime_utc '2025-03-06 08:34:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1dvb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":194}' # _entry.id 1DVB # _exptl.entry_id 1DVB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1DVB _cell.length_a 50.63 _cell.length_b 81.55 _cell.length_c 100.26 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DVB _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA,PQS tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1,2 A,B,C,D,E 2 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 20 A GLU 20 1_555 D ZN ZN . A ZN 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc2 A OE2 GLU 53 A GLU 53 1_555 C FE FE . A FE 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? metalc ? metalc3 A OE1 GLU 53 A GLU 53 1_555 D ZN ZN . A ZN 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc4 A ND1 HIS 56 A HIS 56 1_555 D ZN ZN . A ZN 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc5 A OE1 GLU 94 A GLU 94 1_555 C FE FE . A FE 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc6 A OE2 GLU 94 A GLU 94 1_555 C FE FE . A FE 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc7 A OE1 GLU 128 A GLU 128 1_555 C FE FE . A FE 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc8 A OE2 GLU 128 A GLU 128 1_555 D ZN ZN . A ZN 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc9 A OE1 GLU 128 A GLU 128 1_555 D ZN ZN . A ZN 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.763 ? metalc ? metalc10 A ND1 HIS 131 A HIS 131 1_555 C FE FE . A FE 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc11 A SG CYS 158 A CYS 158 1_555 B FE FE . A FE 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc12 A SG CYS 161 A CYS 161 1_555 B FE FE . A FE 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc13 A SG CYS 174 A CYS 174 1_555 B FE FE . A FE 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc14 A SG CYS 177 A CYS 177 1_555 B FE FE . A FE 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc15 C FE FE . A FE 193 1_555 E O HOH . A HOH 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1DVB _atom_sites.fract_transf_matrix[1][1] 0.019751 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012262 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009974 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FE A 1 192 192 FE FE . C 2 FE A 1 193 193 FE FE . D 3 ZN A 1 194 194 ZN ZN . E 4 HOH A 1 195 195 HOH HOH . E 4 HOH A 2 196 196 HOH HOH . E 4 HOH A 3 197 197 HOH HOH . E 4 HOH A 4 198 198 HOH HOH . E 4 HOH A 5 199 199 HOH HOH . E 4 HOH A 6 200 200 HOH HOH . E 4 HOH A 7 201 201 HOH HOH . E 4 HOH A 8 202 202 HOH HOH . E 4 HOH A 9 203 203 HOH HOH . E 4 HOH A 10 204 204 HOH HOH . E 4 HOH A 11 205 205 HOH HOH . E 4 HOH A 12 206 206 HOH HOH . E 4 HOH A 13 207 207 HOH HOH . E 4 HOH A 14 208 208 HOH HOH . E 4 HOH A 15 209 209 HOH HOH . E 4 HOH A 16 210 210 HOH HOH . E 4 HOH A 17 211 211 HOH HOH . E 4 HOH A 18 212 212 HOH HOH . E 4 HOH A 19 213 213 HOH HOH . E 4 HOH A 20 214 214 HOH HOH . E 4 HOH A 21 215 215 HOH HOH . E 4 HOH A 22 216 216 HOH HOH . E 4 HOH A 23 217 217 HOH HOH . E 4 HOH A 24 218 218 HOH HOH . E 4 HOH A 25 219 219 HOH HOH . E 4 HOH A 26 220 220 HOH HOH . E 4 HOH A 27 221 221 HOH HOH . E 4 HOH A 28 222 222 HOH HOH . E 4 HOH A 29 223 223 HOH HOH . E 4 HOH A 30 224 224 HOH HOH . E 4 HOH A 31 225 225 HOH HOH . E 4 HOH A 32 226 226 HOH HOH . E 4 HOH A 33 227 227 HOH HOH . E 4 HOH A 34 228 228 HOH HOH . E 4 HOH A 35 229 229 HOH HOH . E 4 HOH A 36 230 230 HOH HOH . E 4 HOH A 37 231 231 HOH HOH . E 4 HOH A 38 232 232 HOH HOH . E 4 HOH A 39 233 233 HOH HOH . E 4 HOH A 40 234 234 HOH HOH . E 4 HOH A 41 235 235 HOH HOH . E 4 HOH A 42 236 236 HOH HOH . E 4 HOH A 43 237 237 HOH HOH . E 4 HOH A 44 238 238 HOH HOH . E 4 HOH A 45 239 239 HOH HOH . E 4 HOH A 46 240 240 HOH HOH . E 4 HOH A 47 241 241 HOH HOH . E 4 HOH A 48 242 242 HOH HOH . E 4 HOH A 49 243 243 HOH HOH . E 4 HOH A 50 244 244 HOH HOH . E 4 HOH A 51 245 245 HOH HOH . E 4 HOH A 52 246 246 HOH HOH . E 4 HOH A 53 247 247 HOH HOH . E 4 HOH A 54 248 248 HOH HOH . E 4 HOH A 55 249 249 HOH HOH . E 4 HOH A 56 250 250 HOH HOH . E 4 HOH A 57 251 251 HOH HOH . E 4 HOH A 58 252 252 HOH HOH . E 4 HOH A 59 253 253 HOH HOH . E 4 HOH A 60 254 254 HOH HOH . E 4 HOH A 61 255 255 HOH HOH . E 4 HOH A 62 256 256 HOH HOH . E 4 HOH A 63 258 258 HOH HOH . E 4 HOH A 64 259 259 HOH HOH . E 4 HOH A 65 260 260 HOH HOH . E 4 HOH A 66 261 261 HOH HOH . E 4 HOH A 67 265 265 HOH HOH . E 4 HOH A 68 266 266 HOH HOH . E 4 HOH A 69 267 267 HOH HOH . E 4 HOH A 70 268 268 HOH HOH . E 4 HOH A 71 273 273 HOH HOH . E 4 HOH A 72 274 274 HOH HOH . E 4 HOH A 73 277 277 HOH HOH . E 4 HOH A 74 278 278 HOH HOH . E 4 HOH A 75 279 279 HOH HOH . E 4 HOH A 76 280 280 HOH HOH . E 4 HOH A 77 281 281 HOH HOH . E 4 HOH A 78 282 282 HOH HOH . E 4 HOH A 79 283 283 HOH HOH . E 4 HOH A 80 285 285 HOH HOH . E 4 HOH A 81 287 287 HOH HOH . E 4 HOH A 82 288 288 HOH HOH . E 4 HOH A 83 289 289 HOH HOH . E 4 HOH A 84 293 293 HOH HOH . E 4 HOH A 85 294 294 HOH HOH . E 4 HOH A 86 296 296 HOH HOH . E 4 HOH A 87 297 297 HOH HOH . E 4 HOH A 88 298 298 HOH HOH . E 4 HOH A 89 299 299 HOH HOH . E 4 HOH A 90 300 300 HOH HOH . E 4 HOH A 91 301 301 HOH HOH . E 4 HOH A 92 302 302 HOH HOH . E 4 HOH A 93 303 303 HOH HOH . E 4 HOH A 94 304 304 HOH HOH . E 4 HOH A 95 305 305 HOH HOH . E 4 HOH A 96 306 306 HOH HOH . E 4 HOH A 97 307 307 HOH HOH . E 4 HOH A 98 308 308 HOH HOH . E 4 HOH A 99 309 309 HOH HOH . E 4 HOH A 100 310 310 HOH HOH . E 4 HOH A 101 311 311 HOH HOH . E 4 HOH A 102 312 312 HOH HOH . E 4 HOH A 103 313 313 HOH HOH . E 4 HOH A 104 314 314 HOH HOH . E 4 HOH A 105 315 315 HOH HOH . E 4 HOH A 106 316 316 HOH HOH . E 4 HOH A 107 317 317 HOH HOH . E 4 HOH A 108 318 318 HOH HOH . E 4 HOH A 109 319 319 HOH HOH . E 4 HOH A 110 320 320 HOH HOH . E 4 HOH A 111 321 321 HOH HOH . E 4 HOH A 112 322 322 HOH HOH . E 4 HOH A 113 323 323 HOH HOH . E 4 HOH A 114 326 326 HOH HOH . E 4 HOH A 115 327 327 HOH HOH . E 4 HOH A 116 328 328 HOH HOH . E 4 HOH A 117 329 329 HOH HOH . E 4 HOH A 118 330 330 HOH HOH . E 4 HOH A 119 331 331 HOH HOH . E 4 HOH A 120 333 333 HOH HOH . E 4 HOH A 121 334 334 HOH HOH . E 4 HOH A 122 335 335 HOH HOH . E 4 HOH A 123 336 336 HOH HOH . E 4 HOH A 124 337 337 HOH HOH . E 4 HOH A 125 338 338 HOH HOH . E 4 HOH A 126 339 339 HOH HOH . E 4 HOH A 127 340 340 HOH HOH . E 4 HOH A 128 341 341 HOH HOH . E 4 HOH A 129 342 342 HOH HOH . E 4 HOH A 130 343 343 HOH HOH . E 4 HOH A 131 344 344 HOH HOH . E 4 HOH A 132 345 345 HOH HOH . E 4 HOH A 133 346 346 HOH HOH . E 4 HOH A 134 347 347 HOH HOH . E 4 HOH A 135 348 348 HOH HOH . E 4 HOH A 136 349 349 HOH HOH . E 4 HOH A 137 351 351 HOH HOH . E 4 HOH A 138 352 352 HOH HOH . E 4 HOH A 139 353 353 HOH HOH . E 4 HOH A 140 355 355 HOH HOH . E 4 HOH A 141 356 356 HOH HOH . E 4 HOH A 142 357 357 HOH HOH . E 4 HOH A 143 358 358 HOH HOH . E 4 HOH A 144 359 359 HOH HOH . E 4 HOH A 145 360 360 HOH HOH . E 4 HOH A 146 361 361 HOH HOH . E 4 HOH A 147 362 362 HOH HOH . E 4 HOH A 148 363 363 HOH HOH . E 4 HOH A 149 364 364 HOH HOH . E 4 HOH A 150 369 369 HOH HOH . E 4 HOH A 151 370 370 HOH HOH . E 4 HOH A 152 371 371 HOH HOH . E 4 HOH A 153 374 374 HOH HOH . E 4 HOH A 154 375 375 HOH HOH . E 4 HOH A 155 376 376 HOH HOH . E 4 HOH A 156 377 377 HOH HOH . E 4 HOH A 157 379 379 HOH HOH . E 4 HOH A 158 380 380 HOH HOH . E 4 HOH A 159 383 383 HOH HOH . E 4 HOH A 160 384 384 HOH HOH . E 4 HOH A 161 387 387 HOH HOH . E 4 HOH A 162 389 389 HOH HOH . E 4 HOH A 163 390 390 HOH HOH . E 4 HOH A 164 397 397 HOH HOH . E 4 HOH A 165 398 398 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x -3.649 _atom_site.Cartn_y 17.731 _atom_site.Cartn_z 10.678 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 20.63 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 194 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 243 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #