data_1DVE # _model_server_result.job_id p9R-nRzMSvvNhFXJuxYfeg _model_server_result.datetime_utc '2024-11-13 14:04:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1dve # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":300}' # _entry.id 1DVE # _exptl.entry_id 1DVE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1DVE _cell.length_a 56.139 _cell.length_b 56.139 _cell.length_c 183.984 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DVE _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 25 A HIS 25 1_555 B FE HEM . A HEM 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc2 B FE HEM . A HEM 300 1_555 C O HOH . A HOH 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 116 n n CHA C4D HEM doub 117 n n CHA HHA HEM sing 118 n n CHB C4A HEM sing 119 n n CHB C1B HEM doub 120 n n CHB HHB HEM sing 121 n n CHC C4B HEM sing 122 n n CHC C1C HEM doub 123 n n CHC HHC HEM sing 124 n n CHD C4C HEM doub 125 n n CHD C1D HEM sing 126 n n CHD HHD HEM sing 127 n n C1A C2A HEM doub 128 n y C1A NA HEM sing 129 n y C2A C3A HEM sing 130 n y C2A CAA HEM sing 131 n n C3A C4A HEM doub 132 n y C3A CMA HEM sing 133 n n C4A NA HEM sing 134 n y CMA HMA HEM sing 135 n n CMA HMAA HEM sing 136 n n CMA HMAB HEM sing 137 n n CAA CBA HEM sing 138 n n CAA HAA HEM sing 139 n n CAA HAAA HEM sing 140 n n CBA CGA HEM sing 141 n n CBA HBA HEM sing 142 n n CBA HBAA HEM sing 143 n n CGA O1A HEM doub 144 n n CGA O2A HEM sing 145 n n C1B C2B HEM sing 146 n n C1B NB HEM sing 147 n n C2B C3B HEM doub 148 n n C2B CMB HEM sing 149 n n C3B C4B HEM sing 150 n n C3B CAB HEM sing 151 n n C4B NB HEM doub 152 n n CMB HMB HEM sing 153 n n CMB HMBA HEM sing 154 n n CMB HMBB HEM sing 155 n n CAB CBB HEM doub 156 n n CAB HAB HEM sing 157 n n CBB HBB HEM sing 158 n n CBB HBBA HEM sing 159 n n C1C C2C HEM sing 160 n y C1C NC HEM sing 161 n y C2C C3C HEM doub 162 n y C2C CMC HEM sing 163 n n C3C C4C HEM sing 164 n y C3C CAC HEM sing 165 n n C4C NC HEM sing 166 n y CMC HMC HEM sing 167 n n CMC HMCA HEM sing 168 n n CMC HMCB HEM sing 169 n n CAC CBC HEM doub 170 n n CAC HAC HEM sing 171 n n CBC HBC HEM sing 172 n n CBC HBCA HEM sing 173 n n C1D C2D HEM sing 174 n n C1D ND HEM doub 175 n n C2D C3D HEM doub 176 n n C2D CMD HEM sing 177 n n C3D C4D HEM sing 178 n n C3D CAD HEM sing 179 n n C4D ND HEM sing 180 n n CMD HMD HEM sing 181 n n CMD HMDA HEM sing 182 n n CMD HMDB HEM sing 183 n n CAD CBD HEM sing 184 n n CAD HAD HEM sing 185 n n CAD HADA HEM sing 186 n n CBD CGD HEM sing 187 n n CBD HBD HEM sing 188 n n CBD HBDA HEM sing 189 n n CGD O1D HEM doub 190 n n CGD O2D HEM sing 191 n n O2A H2A HEM sing 192 n n O2D H2D HEM sing 193 n n FE NA HEM sing 194 n n FE NB HEM sing 195 n n FE NC HEM sing 196 n n FE ND HEM sing 197 n n # _atom_sites.entry_id 1DVE _atom_sites.fract_transf_matrix[1][1] 0.017813 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017813 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005435 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 300 300 HEM HEM . C 3 HOH A 1 301 1 HOH TIP . C 3 HOH A 2 302 2 HOH TIP . C 3 HOH A 3 303 3 HOH TIP . C 3 HOH A 4 304 4 HOH TIP . C 3 HOH A 5 305 5 HOH TIP . C 3 HOH A 6 306 6 HOH TIP . C 3 HOH A 7 307 7 HOH TIP . C 3 HOH A 8 308 8 HOH TIP . C 3 HOH A 9 309 9 HOH TIP . C 3 HOH A 10 310 10 HOH TIP . C 3 HOH A 11 311 11 HOH TIP . C 3 HOH A 12 312 12 HOH TIP . C 3 HOH A 13 313 13 HOH TIP . C 3 HOH A 14 314 14 HOH TIP . C 3 HOH A 15 315 15 HOH TIP . C 3 HOH A 16 316 16 HOH TIP . C 3 HOH A 17 317 17 HOH TIP . C 3 HOH A 18 318 18 HOH TIP . C 3 HOH A 19 319 19 HOH TIP . C 3 HOH A 20 320 20 HOH TIP . C 3 HOH A 21 321 21 HOH TIP . C 3 HOH A 22 322 23 HOH TIP . C 3 HOH A 23 323 24 HOH TIP . C 3 HOH A 24 324 25 HOH TIP . C 3 HOH A 25 325 26 HOH TIP . C 3 HOH A 26 326 27 HOH TIP . C 3 HOH A 27 327 28 HOH TIP . C 3 HOH A 28 328 29 HOH TIP . C 3 HOH A 29 329 30 HOH TIP . C 3 HOH A 30 330 31 HOH TIP . C 3 HOH A 31 331 32 HOH TIP . C 3 HOH A 32 332 33 HOH TIP . C 3 HOH A 33 333 34 HOH TIP . C 3 HOH A 34 334 35 HOH TIP . C 3 HOH A 35 335 36 HOH TIP . C 3 HOH A 36 336 37 HOH TIP . C 3 HOH A 37 337 38 HOH TIP . C 3 HOH A 38 338 39 HOH TIP . C 3 HOH A 39 339 40 HOH TIP . C 3 HOH A 40 340 41 HOH TIP . C 3 HOH A 41 341 42 HOH TIP . C 3 HOH A 42 342 43 HOH TIP . C 3 HOH A 43 343 44 HOH TIP . C 3 HOH A 44 344 45 HOH TIP . C 3 HOH A 45 345 46 HOH TIP . C 3 HOH A 46 346 47 HOH TIP . C 3 HOH A 47 347 48 HOH TIP . C 3 HOH A 48 348 49 HOH TIP . C 3 HOH A 49 349 50 HOH TIP . C 3 HOH A 50 350 51 HOH TIP . C 3 HOH A 51 351 52 HOH TIP . C 3 HOH A 52 352 53 HOH TIP . C 3 HOH A 53 353 54 HOH TIP . C 3 HOH A 54 354 55 HOH TIP . C 3 HOH A 55 355 56 HOH TIP . C 3 HOH A 56 356 57 HOH TIP . C 3 HOH A 57 357 58 HOH TIP . C 3 HOH A 58 358 59 HOH TIP . C 3 HOH A 59 359 60 HOH TIP . C 3 HOH A 60 360 22 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 42.97 21.736 -124.203 1 31.51 ? CHA HEM 300 A 1 HETATM 2 C CHB HEM . . . B 2 42.628 24.457 -128.166 1 35.58 ? CHB HEM 300 A 1 HETATM 3 C CHC HEM . . . B 2 47.134 26.103 -127.388 1 31.88 ? CHC HEM 300 A 1 HETATM 4 C CHD HEM . . . B 2 47.449 23.291 -123.503 1 29.47 ? CHD HEM 300 A 1 HETATM 5 C C1A HEM . . . B 2 42.46 22.337 -125.34 1 33.89 ? C1A HEM 300 A 1 HETATM 6 C C2A HEM . . . B 2 41.099 22.118 -125.89 1 35.06 ? C2A HEM 300 A 1 HETATM 7 C C3A HEM . . . B 2 41.037 22.897 -127.021 1 34.56 ? C3A HEM 300 A 1 HETATM 8 C C4A HEM . . . B 2 42.302 23.569 -127.153 1 34.84 ? C4A HEM 300 A 1 HETATM 9 C CMA HEM . . . B 2 39.859 23.05 -127.974 1 35.13 ? CMA HEM 300 A 1 HETATM 10 C CAA HEM . . . B 2 40.047 21.227 -125.291 1 36.31 ? CAA HEM 300 A 1 HETATM 11 C CBA HEM . . . B 2 40.172 19.704 -125.676 1 41.11 ? CBA HEM 300 A 1 HETATM 12 C CGA HEM . . . B 2 39.425 18.791 -124.703 1 42.62 ? CGA HEM 300 A 1 HETATM 13 O O1A HEM . . . B 2 38.414 19.188 -124.088 1 42.42 ? O1A HEM 300 A 1 HETATM 14 O O2A HEM . . . B 2 39.87 17.588 -124.546 1 41.49 ? O2A HEM 300 A 1 HETATM 15 C C1B HEM . . . B 2 43.839 25.146 -128.307 1 35.08 ? C1B HEM 300 A 1 HETATM 16 C C2B HEM . . . B 2 44.164 26.101 -129.396 1 35.59 ? C2B HEM 300 A 1 HETATM 17 C C3B HEM . . . B 2 45.408 26.559 -129.17 1 35.26 ? C3B HEM 300 A 1 HETATM 18 C C4B HEM . . . B 2 45.868 25.898 -127.957 1 33.69 ? C4B HEM 300 A 1 HETATM 19 C CMB HEM . . . B 2 43.21 26.445 -130.515 1 36.93 ? CMB HEM 300 A 1 HETATM 20 C CAB HEM . . . B 2 46.214 27.56 -129.981 1 35.37 ? CAB HEM 300 A 1 HETATM 21 C CBB HEM . . . B 2 47.15 27.224 -130.844 1 38.02 ? CBB HEM 300 A 1 HETATM 22 C C1C HEM . . . B 2 47.653 25.5 -126.25 1 30.81 ? C1C HEM 300 A 1 HETATM 23 C C2C HEM . . . B 2 48.979 25.721 -125.703 1 30.2 ? C2C HEM 300 A 1 HETATM 24 C C3C HEM . . . B 2 49.058 24.911 -124.613 1 29.71 ? C3C HEM 300 A 1 HETATM 25 C C4C HEM . . . B 2 47.783 24.216 -124.499 1 30.07 ? C4C HEM 300 A 1 HETATM 26 C CMC HEM . . . B 2 50 26.667 -126.293 1 31.46 ? CMC HEM 300 A 1 HETATM 27 C CAC HEM . . . B 2 50.168 24.652 -123.612 1 30.78 ? CAC HEM 300 A 1 HETATM 28 C CBC HEM . . . B 2 51.372 25.169 -123.561 1 30.47 ? CBC HEM 300 A 1 HETATM 29 C C1D HEM . . . B 2 46.269 22.6 -123.324 1 30.3 ? C1D HEM 300 A 1 HETATM 30 C C2D HEM . . . B 2 46.004 21.676 -122.276 1 30.93 ? C2D HEM 300 A 1 HETATM 31 C C3D HEM . . . B 2 44.716 21.236 -122.479 1 30.24 ? C3D HEM 300 A 1 HETATM 32 C C4D HEM . . . B 2 44.217 21.903 -123.658 1 30.46 ? C4D HEM 300 A 1 HETATM 33 C CMD HEM . . . B 2 46.966 21.277 -121.171 1 30.78 ? CMD HEM 300 A 1 HETATM 34 C CAD HEM . . . B 2 43.987 20.242 -121.624 1 32.66 ? CAD HEM 300 A 1 HETATM 35 C CBD HEM . . . B 2 42.922 20.951 -120.727 1 33.65 ? CBD HEM 300 A 1 HETATM 36 C CGD HEM . . . B 2 42.199 19.973 -119.888 1 33.06 ? CGD HEM 300 A 1 HETATM 37 O O1D HEM . . . B 2 42.371 19.906 -118.651 1 34.91 ? O1D HEM 300 A 1 HETATM 38 O O2D HEM . . . B 2 41.409 19.194 -120.489 1 32.1 ? O2D HEM 300 A 1 HETATM 39 N NA HEM . . . B 2 43.17 23.219 -126.118 1 33.16 ? NA HEM 300 A 1 HETATM 40 N NB HEM . . . B 2 44.935 25.052 -127.437 1 34.67 ? NB HEM 300 A 1 HETATM 41 N NC HEM . . . B 2 46.951 24.582 -125.492 1 28.84 ? NC HEM 300 A 1 HETATM 42 N ND HEM . . . B 2 45.194 22.732 -124.152 1 29.99 ? ND HEM 300 A 1 HETATM 43 FE FE HEM . . . B 2 45.05 24.022 -125.819 1 31.66 ? FE HEM 300 A 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #