data_1DVF # _model_server_result.job_id KypcHDPt1TNh87TtzwLDXQ _model_server_result.datetime_utc '2025-02-05 18:07:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1dvf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1160}' # _entry.id 1DVF # _exptl.entry_id 1DVF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.2 _cell.angle_gamma 90 _cell.entry_id 1DVF _cell.length_a 152.8 _cell.length_b 79.4 _cell.length_c 51.5 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DVF _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA octameric 8 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K 1 1 A,B,C,D,E,F,G,H,I,J,K 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 A CYS 23 1_555 A SG CYS 88 A CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? disulf ? disulf2 B SG CYS 22 B CYS 22 1_555 B SG CYS 95 B CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf3 C SG CYS 23 C CYS 23 1_555 C SG CYS 88 C CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 D SG CYS 22 D CYS 22 1_555 D SG CYS 96 D CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc1 B ND1 HIS 86 B HIS 86 1_555 E ZN ZN . B ZN 1160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc2 B OD2 ASP 88 B ASP 88 1_555 E ZN ZN . B ZN 1160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc3 B OD2 ASP 100 B ASP 100 1_555 G ZN ZN . D ZN 1158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.827 ? metalc ? metalc4 I O HOH . B HOH 1011 1_555 G ZN ZN . D ZN 1158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.742 ? metalc ? metalc5 C O ASP 1 C ASP 1 1_555 F ZN ZN . C ZN 1159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc6 C N ASP 1 C ASP 1 1_555 F ZN ZN . C ZN 1159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc7 C OE1 GLN 3 C GLN 3 1_555 F ZN ZN . C ZN 1159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? metalc ? metalc8 D NE2 HIS 33 D HIS 33 1_555 G ZN ZN . D ZN 1158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc9 D OD2 ASP 52 D ASP 52 1_555 G ZN ZN . D ZN 1158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1DVF _atom_sites.fract_transf_matrix[1][1] 0.006545 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001178 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012594 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019729 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 ZN B 1 1160 1160 ZN ZN . F 5 ZN C 1 1159 1159 ZN ZN . G 5 ZN D 1 1158 1158 ZN ZN . H 6 HOH A 1 1012 1012 HOH HOH . H 6 HOH A 2 1014 1014 HOH HOH . H 6 HOH A 3 1017 1017 HOH HOH . H 6 HOH A 4 1019 1019 HOH HOH . H 6 HOH A 5 1037 1037 HOH HOH . H 6 HOH A 6 1039 1039 HOH HOH . H 6 HOH A 7 1040 1040 HOH HOH . H 6 HOH A 8 1056 1056 HOH HOH . H 6 HOH A 9 1061 1061 HOH HOH . H 6 HOH A 10 1064 1064 HOH HOH . H 6 HOH A 11 1072 1072 HOH HOH . H 6 HOH A 12 1073 1073 HOH HOH . H 6 HOH A 13 1080 1080 HOH HOH . H 6 HOH A 14 1087 1087 HOH HOH . H 6 HOH A 15 1088 1088 HOH HOH . H 6 HOH A 16 1095 1095 HOH HOH . H 6 HOH A 17 1097 1097 HOH HOH . H 6 HOH A 18 1106 1106 HOH HOH . H 6 HOH A 19 1110 1110 HOH HOH . H 6 HOH A 20 1132 1132 HOH HOH . H 6 HOH A 21 1135 1135 HOH HOH . H 6 HOH A 22 1143 1143 HOH HOH . H 6 HOH A 23 1147 1147 HOH HOH . H 6 HOH A 24 1149 1149 HOH HOH . H 6 HOH A 25 1153 1153 HOH HOH . H 6 HOH A 26 1156 1156 HOH HOH . I 6 HOH B 1 1007 1007 HOH HOH . I 6 HOH B 2 1011 1011 HOH HOH . I 6 HOH B 3 1015 1015 HOH HOH . I 6 HOH B 4 1016 1016 HOH HOH . I 6 HOH B 5 1022 1022 HOH HOH . I 6 HOH B 6 1027 1027 HOH HOH . I 6 HOH B 7 1034 1034 HOH HOH . I 6 HOH B 8 1041 1041 HOH HOH . I 6 HOH B 9 1043 1043 HOH HOH . I 6 HOH B 10 1045 1045 HOH HOH . I 6 HOH B 11 1048 1048 HOH HOH . I 6 HOH B 12 1060 1060 HOH HOH . I 6 HOH B 13 1070 1070 HOH HOH . I 6 HOH B 14 1078 1078 HOH HOH . I 6 HOH B 15 1079 1079 HOH HOH . I 6 HOH B 16 1082 1082 HOH HOH . I 6 HOH B 17 1092 1092 HOH HOH . I 6 HOH B 18 1094 1094 HOH HOH . I 6 HOH B 19 1096 1096 HOH HOH . I 6 HOH B 20 1100 1100 HOH HOH . I 6 HOH B 21 1104 1104 HOH HOH . I 6 HOH B 22 1105 1105 HOH HOH . I 6 HOH B 23 1108 1108 HOH HOH . I 6 HOH B 24 1111 1111 HOH HOH . I 6 HOH B 25 1117 1117 HOH HOH . I 6 HOH B 26 1119 1119 HOH HOH . I 6 HOH B 27 1120 1120 HOH HOH . I 6 HOH B 28 1121 1121 HOH HOH . I 6 HOH B 29 1122 1122 HOH HOH . I 6 HOH B 30 1123 1123 HOH HOH . I 6 HOH B 31 1124 1124 HOH HOH . I 6 HOH B 32 1131 1131 HOH HOH . I 6 HOH B 33 1133 1133 HOH HOH . I 6 HOH B 34 1134 1134 HOH HOH . I 6 HOH B 35 1146 1146 HOH HOH . I 6 HOH B 36 1155 1155 HOH HOH . I 6 HOH B 37 1157 1157 HOH HOH . J 6 HOH C 1 1001 1001 HOH HOH . J 6 HOH C 2 1005 1005 HOH HOH . J 6 HOH C 3 1008 1008 HOH HOH . J 6 HOH C 4 1009 1009 HOH HOH . J 6 HOH C 5 1010 1010 HOH HOH . J 6 HOH C 6 1018 1018 HOH HOH . J 6 HOH C 7 1021 1021 HOH HOH . J 6 HOH C 8 1025 1025 HOH HOH . J 6 HOH C 9 1026 1026 HOH HOH . J 6 HOH C 10 1028 1028 HOH HOH . J 6 HOH C 11 1031 1031 HOH HOH . J 6 HOH C 12 1032 1032 HOH HOH . J 6 HOH C 13 1033 1033 HOH HOH . J 6 HOH C 14 1035 1035 HOH HOH . J 6 HOH C 15 1038 1038 HOH HOH . J 6 HOH C 16 1042 1042 HOH HOH . J 6 HOH C 17 1046 1046 HOH HOH . J 6 HOH C 18 1047 1047 HOH HOH . J 6 HOH C 19 1050 1050 HOH HOH . J 6 HOH C 20 1051 1051 HOH HOH . J 6 HOH C 21 1055 1055 HOH HOH . J 6 HOH C 22 1057 1057 HOH HOH . J 6 HOH C 23 1062 1062 HOH HOH . J 6 HOH C 24 1065 1065 HOH HOH . J 6 HOH C 25 1077 1077 HOH HOH . J 6 HOH C 26 1081 1081 HOH HOH . J 6 HOH C 27 1084 1084 HOH HOH . J 6 HOH C 28 1085 1085 HOH HOH . J 6 HOH C 29 1090 1090 HOH HOH . J 6 HOH C 30 1091 1091 HOH HOH . J 6 HOH C 31 1093 1093 HOH HOH . J 6 HOH C 32 1098 1098 HOH HOH . J 6 HOH C 33 1101 1101 HOH HOH . J 6 HOH C 34 1102 1102 HOH HOH . J 6 HOH C 35 1109 1109 HOH HOH . J 6 HOH C 36 1113 1113 HOH HOH . J 6 HOH C 37 1116 1116 HOH HOH . J 6 HOH C 38 1118 1118 HOH HOH . J 6 HOH C 39 1128 1128 HOH HOH . J 6 HOH C 40 1129 1129 HOH HOH . J 6 HOH C 41 1130 1130 HOH HOH . J 6 HOH C 42 1138 1138 HOH HOH . J 6 HOH C 43 1140 1140 HOH HOH . J 6 HOH C 44 1141 1141 HOH HOH . J 6 HOH C 45 1144 1144 HOH HOH . J 6 HOH C 46 1145 1145 HOH HOH . J 6 HOH C 47 1150 1150 HOH HOH . J 6 HOH C 48 1154 1154 HOH HOH . K 6 HOH D 1 1002 1002 HOH HOH . K 6 HOH D 2 1003 1003 HOH HOH . K 6 HOH D 3 1004 1004 HOH HOH . K 6 HOH D 4 1006 1006 HOH HOH . K 6 HOH D 5 1013 1013 HOH HOH . K 6 HOH D 6 1020 1020 HOH HOH . K 6 HOH D 7 1023 1023 HOH HOH . K 6 HOH D 8 1024 1024 HOH HOH . K 6 HOH D 9 1029 1029 HOH HOH . K 6 HOH D 10 1030 1030 HOH HOH . K 6 HOH D 11 1036 1036 HOH HOH . K 6 HOH D 12 1044 1044 HOH HOH . K 6 HOH D 13 1049 1049 HOH HOH . K 6 HOH D 14 1052 1052 HOH HOH . K 6 HOH D 15 1053 1053 HOH HOH . K 6 HOH D 16 1054 1054 HOH HOH . K 6 HOH D 17 1058 1058 HOH HOH . K 6 HOH D 18 1059 1059 HOH HOH . K 6 HOH D 19 1063 1063 HOH HOH . K 6 HOH D 20 1066 1066 HOH HOH . K 6 HOH D 21 1067 1067 HOH HOH . K 6 HOH D 22 1068 1068 HOH HOH . K 6 HOH D 23 1069 1069 HOH HOH . K 6 HOH D 24 1071 1071 HOH HOH . K 6 HOH D 25 1074 1074 HOH HOH . K 6 HOH D 26 1075 1075 HOH HOH . K 6 HOH D 27 1076 1076 HOH HOH . K 6 HOH D 28 1083 1083 HOH HOH . K 6 HOH D 29 1086 1086 HOH HOH . K 6 HOH D 30 1089 1089 HOH HOH . K 6 HOH D 31 1099 1099 HOH HOH . K 6 HOH D 32 1103 1103 HOH HOH . K 6 HOH D 33 1107 1107 HOH HOH . K 6 HOH D 34 1112 1112 HOH HOH . K 6 HOH D 35 1114 1114 HOH HOH . K 6 HOH D 36 1115 1115 HOH HOH . K 6 HOH D 37 1125 1125 HOH HOH . K 6 HOH D 38 1126 1126 HOH HOH . K 6 HOH D 39 1127 1127 HOH HOH . K 6 HOH D 40 1136 1136 HOH HOH . K 6 HOH D 41 1137 1137 HOH HOH . K 6 HOH D 42 1139 1139 HOH HOH . K 6 HOH D 43 1142 1142 HOH HOH . K 6 HOH D 44 1148 1148 HOH HOH . K 6 HOH D 45 1151 1151 HOH HOH . K 6 HOH D 46 1152 1152 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 5 _atom_site.Cartn_x 19.121 _atom_site.Cartn_y 16.547 _atom_site.Cartn_z -3.077 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 55.32 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 1160 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 34 _model_server_stats.parse_time_ms 33 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 1169 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 1 #