data_1DVH # _model_server_result.job_id lqO_ZoC7yCc5NBpf2M7HKQ _model_server_result.datetime_utc '2024-10-18 11:28:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1dvh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":80}' # _entry.id 1DVH # _exptl.entry_id 1DVH _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 618.503 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1DVH _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DVH _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 10 A CYS 10 1_555 B CAB HEC . A HEC 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.813 ? covale ? covale2 A SG CYS 13 A CYS 13 1_555 B CAC HEC . A HEC 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.829 ? metalc ? metalc1 A NE2 HIS 14 A HIS 14 1_555 B FE HEC . A HEC 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc2 A SD MET 57 A MET 57 1_555 B FE HEC . A HEC 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1DVH _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id HEC _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 80 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id HEC _pdbx_nonpoly_scheme.auth_mon_id HEM _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . B 2 0.625 3.904 -2.234 1 6.41 ? FE HEC 80 A 1 HETATM 2 C CHA HEC . . . B 2 0.396 5.061 0.931 1 5.52 ? CHA HEC 80 A 1 HETATM 3 C CHB HEC . . . B 2 -0.217 0.761 -1.107 1 7.91 ? CHB HEC 80 A 1 HETATM 4 C CHC HEC . . . B 2 0.415 2.798 -5.466 1 6.02 ? CHC HEC 80 A 1 HETATM 5 C CHD HEC . . . B 2 1.197 7.113 -3.372 1 10.53 ? CHD HEC 80 A 1 HETATM 6 N NA HEC . . . B 2 0.317 3.048 -0.435 1 6.22 ? NA HEC 80 A 1 HETATM 7 C C1A HEC . . . B 2 0.284 3.696 0.775 1 6.23 ? C1A HEC 80 A 1 HETATM 8 C C2A HEC . . . B 2 0.089 2.763 1.856 1 8.27 ? C2A HEC 80 A 1 HETATM 9 C C3A HEC . . . B 2 -0.142 1.557 1.291 1 7.07 ? C3A HEC 80 A 1 HETATM 10 C C4A HEC . . . B 2 -0.005 1.737 -0.144 1 9.92 ? C4A HEC 80 A 1 HETATM 11 C CMA HEC . . . B 2 -0.46 0.281 2.018 1 7 ? CMA HEC 80 A 1 HETATM 12 C CAA HEC . . . B 2 0.173 3.099 3.322 1 7.29 ? CAA HEC 80 A 1 HETATM 13 C CBA HEC . . . B 2 -0.828 4.145 3.839 1 11.15 ? CBA HEC 80 A 1 HETATM 14 C CGA HEC . . . B 2 -0.181 5.287 4.621 1 22.27 ? CGA HEC 80 A 1 HETATM 15 O O1A HEC . . . B 2 0.973 5.618 4.355 1 18.65 ? O1A HEC 80 A 1 HETATM 16 O O2A HEC . . . B 2 -0.853 5.845 5.484 1 17.21 ? O2A HEC 80 A 1 HETATM 17 N NB HEC . . . B 2 0.16 2.159 -3.105 1 4.54 ? NB HEC 80 A 1 HETATM 18 C C1B HEC . . . B 2 -0.214 0.982 -2.483 1 10.91 ? C1B HEC 80 A 1 HETATM 19 C C2B HEC . . . B 2 -0.578 -0.002 -3.471 1 5.88 ? C2B HEC 80 A 1 HETATM 20 C C3B HEC . . . B 2 -0.185 0.494 -4.675 1 -0.05 ? C3B HEC 80 A 1 HETATM 21 C C4B HEC . . . B 2 0.151 1.88 -4.458 1 4.49 ? C4B HEC 80 A 1 HETATM 22 C CMB HEC . . . B 2 -1.179 -1.346 -3.159 1 4.31 ? CMB HEC 80 A 1 HETATM 23 C CAB HEC . . . B 2 -0.06 -0.233 -5.994 1 6.35 ? CAB HEC 80 A 1 HETATM 24 C CBB HEC . . . B 2 -1.341 -0.806 -6.592 1 6.48 ? CBB HEC 80 A 1 HETATM 25 N NC HEC . . . B 2 0.854 4.763 -4.043 1 3.58 ? NC HEC 80 A 1 HETATM 26 C C1C HEC . . . B 2 0.725 4.137 -5.27 1 4.45 ? C1C HEC 80 A 1 HETATM 27 C C2C HEC . . . B 2 1.002 5.058 -6.339 1 5.77 ? C2C HEC 80 A 1 HETATM 28 C C3C HEC . . . B 2 1.367 6.234 -5.763 1 8.44 ? C3C HEC 80 A 1 HETATM 29 C C4C HEC . . . B 2 1.148 6.088 -4.327 1 11.13 ? C4C HEC 80 A 1 HETATM 30 C CMC HEC . . . B 2 0.959 4.686 -7.801 1 8.62 ? CMC HEC 80 A 1 HETATM 31 C CAC HEC . . . B 2 1.911 7.456 -6.462 1 3.39 ? CAC HEC 80 A 1 HETATM 32 C CBC HEC . . . B 2 0.822 8.261 -7.185 1 10.94 ? CBC HEC 80 A 1 HETATM 33 N ND HEC . . . B 2 0.761 5.719 -1.398 1 4.28 ? ND HEC 80 A 1 HETATM 34 C C1D HEC . . . B 2 0.99 6.944 -1.999 1 5.02 ? C1D HEC 80 A 1 HETATM 35 C C2D HEC . . . B 2 1.005 7.995 -0.979 1 3.97 ? C2D HEC 80 A 1 HETATM 36 C C3D HEC . . . B 2 0.851 7.375 0.228 1 5.11 ? C3D HEC 80 A 1 HETATM 37 C C4D HEC . . . B 2 0.65 5.987 -0.056 1 9.05 ? C4D HEC 80 A 1 HETATM 38 C CMD HEC . . . B 2 1.18 9.468 -1.244 1 5.28 ? CMD HEC 80 A 1 HETATM 39 C CAD HEC . . . B 2 0.85 7.916 1.648 1 9.04 ? CAD HEC 80 A 1 HETATM 40 C CBD HEC . . . B 2 -0.521 8.378 2.138 1 6.36 ? CBD HEC 80 A 1 HETATM 41 C CGD HEC . . . B 2 -0.866 9.747 1.587 1 6.46 ? CGD HEC 80 A 1 HETATM 42 O O1D HEC . . . B 2 -1.547 9.826 0.567 1 8.25 ? O1D HEC 80 A 1 HETATM 43 O O2D HEC . . . B 2 -0.477 10.726 2.217 1 15.15 ? O2D HEC 80 A 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 51 _model_server_stats.query_time_ms 9601 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #