data_1DVL
#
_model_server_result.job_id            xiO_q4poVLjXm6IabuB4hg 
_model_server_result.datetime_utc      '2024-10-18 17:18:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1dvl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":25}' 
#
_entry.id    1DVL 
#
_exptl.entry_id    1DVL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              430.464 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            NETROPSIN 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          110.09 
_cell.angle_gamma         90 
_cell.entry_id            1DVL 
_cell.length_a            62.4 
_cell.length_b            24.47 
_cell.length_c            36.31 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1DVL 
_symmetry.cell_setting             monoclinic 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C18 H26 N10 O3' 
_chem_comp.formula_weight    430.464 
_chem_comp.id                NT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              NETROPSIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 N1 NT doub 75 n n 
C1 N2 NT sing 76 n n 
C1 N3 NT sing 77 n n 
N1 HN1 NT sing 78 n n 
N2 HN21 NT sing 79 n n 
N2 HN22 NT sing 80 n n 
N3 C2 NT sing 81 n n 
N3 HN3 NT sing 82 n n 
C2 C3 NT sing 83 n n 
C2 H21 NT sing 84 n n 
C2 H22 NT sing 85 n n 
C3 O1 NT doub 86 n n 
C3 N4 NT sing 87 n n 
N4 C4 NT sing 88 n n 
N4 HN4 NT sing 89 n n 
C4 C5 NT sing 90 n y 
C4 C7 NT doub 91 n y 
C5 C6 NT doub 92 n y 
C5 H5 NT sing 93 n n 
C6 N5 NT sing 94 n y 
C6 C9 NT sing 95 n n 
N5 C8 NT sing 96 n n 
N5 C7 NT sing 97 n y 
C8 H81 NT sing 98 n n 
C8 H82 NT sing 99 n n 
C8 H83 NT sing 100 n n 
C7 H7 NT sing 101 n n 
C9 O2 NT doub 102 n n 
C9 N6 NT sing 103 n n 
N6 C10 NT sing 104 n n 
N6 HN6 NT sing 105 n n 
C10 C11 NT sing 106 n y 
C10 C13 NT doub 107 n y 
C11 C12 NT doub 108 n y 
C11 H11 NT sing 109 n n 
C12 N7 NT sing 110 n y 
C12 C15 NT sing 111 n n 
N7 C14 NT sing 112 n n 
N7 C13 NT sing 113 n y 
C14 H141 NT sing 114 n n 
C14 H142 NT sing 115 n n 
C14 H143 NT sing 116 n n 
C13 H13 NT sing 117 n n 
C15 O3 NT doub 118 n n 
C15 N8 NT sing 119 n n 
N8 C16 NT sing 120 n n 
N8 HN8 NT sing 121 n n 
C16 C17 NT sing 122 n n 
C16 H161 NT sing 123 n n 
C16 H162 NT sing 124 n n 
C17 C18 NT sing 125 n n 
C17 H171 NT sing 126 n n 
C17 H172 NT sing 127 n n 
C18 N9 NT doub 128 n n 
C18 N10 NT sing 129 n n 
N9 HN9 NT sing 130 n n 
N10 HN01 NT sing 131 n n 
N10 HN02 NT sing 132 n n 
#
_atom_sites.entry_id                     1DVL 
_atom_sites.fract_transf_matrix[1][1]    0.016026 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005861 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.040866 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.029325 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NT A 1 25 25 NT NT . 
D 3 HOH A 1 103 103 HOH HOH . 
D 3 HOH A 2 106 106 HOH HOH . 
D 3 HOH A 3 107 107 HOH HOH . 
D 3 HOH A 4 113 113 HOH HOH . 
D 3 HOH A 5 115 115 HOH HOH . 
D 3 HOH A 6 121 121 HOH HOH . 
D 3 HOH A 7 125 125 HOH HOH . 
D 3 HOH A 8 128 128 HOH HOH . 
D 3 HOH A 9 129 129 HOH HOH . 
D 3 HOH A 10 130 130 HOH HOH . 
E 3 HOH B 1 101 101 HOH HOH . 
E 3 HOH B 2 102 102 HOH HOH . 
E 3 HOH B 3 105 105 HOH HOH . 
E 3 HOH B 4 108 108 HOH HOH . 
E 3 HOH B 5 109 109 HOH HOH . 
E 3 HOH B 6 110 110 HOH HOH . 
E 3 HOH B 7 111 111 HOH HOH . 
E 3 HOH B 8 112 112 HOH HOH . 
E 3 HOH B 9 114 114 HOH HOH . 
E 3 HOH B 10 116 116 HOH HOH . 
E 3 HOH B 11 117 117 HOH HOH . 
E 3 HOH B 12 118 118 HOH HOH . 
E 3 HOH B 13 119 119 HOH HOH . 
E 3 HOH B 14 120 120 HOH HOH . 
E 3 HOH B 15 122 122 HOH HOH . 
E 3 HOH B 16 123 123 HOH HOH . 
E 3 HOH B 17 124 124 HOH HOH . 
E 3 HOH B 18 126 126 HOH HOH . 
E 3 HOH B 19 127 127 HOH HOH . 
E 3 HOH B 20 131 131 HOH HOH . 
E 3 HOH B 21 132 132 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NT . . . C 2 36.758 -10.113 9.232 1 42.61 ? C1 NT 25 A 1 
HETATM 2 N N1 NT . . . C 2 37.282 -9.508 8.167 1 35.88 ? N1 NT 25 A 1 
HETATM 3 N N2 NT . . . C 2 36.831 -11.448 9.42 1 45.45 ? N2 NT 25 A 1 
HETATM 4 N N3 NT . . . C 2 36.183 -9.399 10.199 1 39.83 ? N3 NT 25 A 1 
HETATM 5 C C2 NT . . . C 2 37.027 -8.551 11.01 1 37.76 ? C2 NT 25 A 1 
HETATM 6 C C3 NT . . . C 2 36.275 -8.162 12.277 1 37.01 ? C3 NT 25 A 1 
HETATM 7 O O1 NT . . . C 2 35.919 -8.838 13.251 1 33.35 ? O1 NT 25 A 1 
HETATM 8 N N4 NT . . . C 2 36.017 -6.852 12.215 1 34.87 ? N4 NT 25 A 1 
HETATM 9 C C4 NT . . . C 2 35.351 -6.344 13.319 1 29.88 ? C4 NT 25 A 1 
HETATM 10 C C5 NT . . . C 2 35.007 -5.039 13.569 1 28.4 ? C5 NT 25 A 1 
HETATM 11 C C6 NT . . . C 2 34.407 -5.003 14.793 1 29.12 ? C6 NT 25 A 1 
HETATM 12 N N5 NT . . . C 2 34.356 -6.258 15.307 1 31.53 ? N5 NT 25 A 1 
HETATM 13 C C8 NT . . . C 2 33.813 -6.856 16.599 1 33.81 ? C8 NT 25 A 1 
HETATM 14 C C7 NT . . . C 2 34.923 -7.098 14.443 1 29.8 ? C7 NT 25 A 1 
HETATM 15 C C9 NT . . . C 2 33.978 -3.775 15.417 1 32.61 ? C9 NT 25 A 1 
HETATM 16 O O2 NT . . . C 2 33.941 -3.674 16.638 1 37.26 ? O2 NT 25 A 1 
HETATM 17 N N6 NT . . . C 2 33.673 -2.8 14.526 1 31.63 ? N6 NT 25 A 1 
HETATM 18 C C10 NT . . . C 2 33.251 -1.513 14.893 1 22.73 ? C10 NT 25 A 1 
HETATM 19 C C11 NT . . . C 2 32.585 -0.612 14.084 1 19.87 ? C11 NT 25 A 1 
HETATM 20 C C12 NT . . . C 2 32.383 0.58 14.734 1 16.57 ? C12 NT 25 A 1 
HETATM 21 N N7 NT . . . C 2 32.916 0.401 15.985 1 18.41 ? N7 NT 25 A 1 
HETATM 22 C C14 NT . . . C 2 33.034 1.343 17.183 1 20.65 ? C14 NT 25 A 1 
HETATM 23 C C13 NT . . . C 2 33.445 -0.826 16.123 1 18.82 ? C13 NT 25 A 1 
HETATM 24 C C15 NT . . . C 2 31.829 1.776 14.071 1 18.19 ? C15 NT 25 A 1 
HETATM 25 O O3 NT . . . C 2 31.88 2.988 14.322 1 23.62 ? O3 NT 25 A 1 
HETATM 26 N N8 NT . . . C 2 31.252 1.499 12.926 1 18.19 ? N8 NT 25 A 1 
HETATM 27 C C16 NT . . . C 2 30.842 2.753 12.313 1 18.02 ? C16 NT 25 A 1 
HETATM 28 C C17 NT . . . C 2 30.337 4.031 12.967 1 21.06 ? C17 NT 25 A 1 
HETATM 29 C C18 NT . . . C 2 29.828 5.103 11.973 1 19.66 ? C18 NT 25 A 1 
HETATM 30 N N9 NT . . . C 2 29.465 6.293 12.412 1 21.75 ? N9 NT 25 A 1 
HETATM 31 N N10 NT . . . C 2 29.483 4.856 10.716 1 18.89 ? N10 NT 25 A 1 
#
_model_server_stats.io_time_ms              54 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          18 
_model_server_stats.element_count           31 
#