data_1DVS # _model_server_result.job_id L9IVGifZJ1EbwKMUArYBNw _model_server_result.datetime_utc '2024-11-09 02:02:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1dvs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":125}' # _entry.id 1DVS # _exptl.entry_id 1DVS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 228.243 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RESVERATROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1DVS _cell.length_a 43.02 _cell.length_b 85.66 _cell.length_c 65.08 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DVS _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 43.02 85.66 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H12 O3' _chem_comp.formula_weight 228.243 _chem_comp.id STL _chem_comp.mon_nstd_flag . _chem_comp.name RESVERATROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 STL doub 290 n y C1 C6 STL sing 291 n y C1 O3 STL sing 292 n n C2 C3 STL sing 293 n y C2 H2 STL sing 294 n n C3 C4 STL doub 295 n y C3 O2 STL sing 296 n n C4 C5 STL sing 297 n y C4 H4 STL sing 298 n n C5 C6 STL doub 299 n y C5 C7 STL sing 300 n n C6 H6 STL sing 301 n n C7 C8 STL doub 302 e n C7 H7 STL sing 303 n n C8 C9 STL sing 304 n n C8 H8 STL sing 305 n n C9 C10 STL doub 306 n y C9 C14 STL sing 307 n y C10 C11 STL sing 308 n y C10 H10 STL sing 309 n n C11 C12 STL doub 310 n y C11 H11 STL sing 311 n n C12 C13 STL sing 312 n y C12 O1 STL sing 313 n n C13 C14 STL doub 314 n y C13 H13 STL sing 315 n n C14 H14 STL sing 316 n n O1 HO1 STL sing 317 n n O2 HO2 STL sing 318 n n O3 HO3 STL sing 319 n n # _atom_sites.entry_id 1DVS _atom_sites.fract_transf_matrix[1][1] 0.023245 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011674 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015366 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 STL A 1 125 1 STL RES . D 3 HOH A 1 126 100 HOH WAT . D 3 HOH A 2 127 101 HOH WAT . D 3 HOH A 3 128 105 HOH WAT . D 3 HOH A 4 129 107 HOH WAT . D 3 HOH A 5 130 109 HOH WAT . D 3 HOH A 6 131 111 HOH WAT . D 3 HOH A 7 132 112 HOH WAT . D 3 HOH A 8 133 113 HOH WAT . D 3 HOH A 9 134 114 HOH WAT . D 3 HOH A 10 135 117 HOH WAT . D 3 HOH A 11 136 118 HOH WAT . D 3 HOH A 12 137 120 HOH WAT . D 3 HOH A 13 138 121 HOH WAT . D 3 HOH A 14 139 122 HOH WAT . D 3 HOH A 15 140 124 HOH WAT . D 3 HOH A 16 141 127 HOH WAT . D 3 HOH A 17 142 128 HOH WAT . D 3 HOH A 18 143 129 HOH WAT . D 3 HOH A 19 144 130 HOH WAT . D 3 HOH A 20 145 131 HOH WAT . D 3 HOH A 21 146 132 HOH WAT . D 3 HOH A 22 147 133 HOH WAT . D 3 HOH A 23 148 140 HOH WAT . D 3 HOH A 24 149 141 HOH WAT . D 3 HOH A 25 150 142 HOH WAT . D 3 HOH A 26 151 143 HOH WAT . D 3 HOH A 27 152 144 HOH WAT . D 3 HOH A 28 153 147 HOH WAT . D 3 HOH A 29 154 148 HOH WAT . D 3 HOH A 30 155 150 HOH WAT . D 3 HOH A 31 156 151 HOH WAT . D 3 HOH A 32 157 154 HOH WAT . D 3 HOH A 33 158 155 HOH WAT . E 3 HOH B 1 125 102 HOH WAT . E 3 HOH B 2 126 103 HOH WAT . E 3 HOH B 3 127 104 HOH WAT . E 3 HOH B 4 128 106 HOH WAT . E 3 HOH B 5 129 108 HOH WAT . E 3 HOH B 6 130 110 HOH WAT . E 3 HOH B 7 131 115 HOH WAT . E 3 HOH B 8 132 116 HOH WAT . E 3 HOH B 9 133 119 HOH WAT . E 3 HOH B 10 134 123 HOH WAT . E 3 HOH B 11 135 125 HOH WAT . E 3 HOH B 12 136 126 HOH WAT . E 3 HOH B 13 137 134 HOH WAT . E 3 HOH B 14 138 135 HOH WAT . E 3 HOH B 15 139 136 HOH WAT . E 3 HOH B 16 140 137 HOH WAT . E 3 HOH B 17 141 138 HOH WAT . E 3 HOH B 18 142 139 HOH WAT . E 3 HOH B 19 143 145 HOH WAT . E 3 HOH B 20 144 146 HOH WAT . E 3 HOH B 21 145 149 HOH WAT . E 3 HOH B 22 146 152 HOH WAT . E 3 HOH B 23 147 153 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 STL . A . C 2 21.452 43.654 2.119 0.5 29.38 ? C1 STL 125 A 1 HETATM 2 C C1 STL . B . C 2 20.504 44.428 29.863 0.5 20.91 ? C1 STL 125 A 1 HETATM 3 C C2 STL . A . C 2 20.82 42.487 1.621 0.5 29.17 ? C2 STL 125 A 1 HETATM 4 C C2 STL . B . C 2 20.913 43.266 30.566 0.5 19.88 ? C2 STL 125 A 1 HETATM 5 C C3 STL . A . C 2 20.369 41.485 2.515 0.5 25.57 ? C3 STL 125 A 1 HETATM 6 C C3 STL . B . C 2 21.38 42.132 29.856 0.5 20.9 ? C3 STL 125 A 1 HETATM 7 C C4 STL . A . C 2 20.549 41.649 3.912 0.5 26.26 ? C4 STL 125 A 1 HETATM 8 C C4 STL . B . C 2 21.437 42.157 28.44 0.5 17.91 ? C4 STL 125 A 1 HETATM 9 C C5 STL . A . C 2 21.186 42.825 4.436 0.5 26.07 ? C5 STL 125 A 1 HETATM 10 C C5 STL . B . C 2 21.03 43.32 27.717 0.5 15.11 ? C5 STL 125 A 1 HETATM 11 C C6 STL . A . C 2 21.634 43.824 3.519 0.5 27.78 ? C6 STL 125 A 1 HETATM 12 C C6 STL . B . C 2 20.564 44.457 28.446 0.5 17.53 ? C6 STL 125 A 1 HETATM 13 C C7 STL . A . C 2 21.412 43.066 5.94 0.5 23.27 ? C7 STL 125 A 1 HETATM 14 C C7 STL . B . C 2 21.065 43.412 26.189 0.5 17.28 ? C7 STL 125 A 1 HETATM 15 C C8 STL . A . C 2 21.086 42.267 6.979 0.5 21.2 ? C8 STL 125 A 1 HETATM 16 C C8 STL . B . C 2 21.436 42.482 25.288 0.5 18.09 ? C8 STL 125 A 1 HETATM 17 C C9 STL . A . C 2 21.279 42.487 8.488 0.5 24.02 ? C9 STL 125 A 1 HETATM 18 C C9 STL . B . C 2 21.493 42.596 23.758 0.5 19.03 ? C9 STL 125 A 1 HETATM 19 C C10 STL . A . C 2 20.846 41.449 9.371 0.5 23.12 ? C10 STL 125 A 1 HETATM 20 C C10 STL . B . C 2 21.901 41.448 23.013 0.5 20.94 ? C10 STL 125 A 1 HETATM 21 C C11 STL . A . C 2 20.992 41.583 10.776 0.5 23.4 ? C11 STL 125 A 1 HETATM 22 C C11 STL . B . C 2 21.969 41.496 21.595 0.5 21.51 ? C11 STL 125 A 1 HETATM 23 C C12 STL . A . C 2 21.573 42.758 11.318 0.5 22.23 ? C12 STL 125 A 1 HETATM 24 C C12 STL . B . C 2 21.633 42.694 20.909 0.5 20.05 ? C12 STL 125 A 1 HETATM 25 C C13 STL . A . C 2 22.008 43.8 10.461 0.5 24.67 ? C13 STL 125 A 1 HETATM 26 C C13 STL . B . C 2 21.228 43.84 21.632 0.5 19.46 ? C13 STL 125 A 1 HETATM 27 C C14 STL . A . C 2 21.866 43.669 9.054 0.5 23.66 ? C14 STL 125 A 1 HETATM 28 C C14 STL . B . C 2 21.155 43.796 23.046 0.5 19.74 ? C14 STL 125 A 1 HETATM 29 O O1 STL . A . C 2 21.712 42.886 12.676 0.5 25.15 ? O1 STL 125 A 1 HETATM 30 O O1 STL . B . C 2 21.701 42.742 19.541 0.5 24.17 ? O1 STL 125 A 1 HETATM 31 O O2 STL . A . C 2 19.757 40.359 2.029 0.5 28.47 ? O2 STL 125 A 1 HETATM 32 O O2 STL . B . C 2 21.776 41.01 30.536 0.5 26.03 ? O2 STL 125 A 1 HETATM 33 O O3 STL . A . C 2 21.886 44.616 1.25 0.5 34.62 ? O3 STL 125 A 1 HETATM 34 O O3 STL . B . C 2 20.051 45.525 30.554 0.5 25.25 ? O3 STL 125 A 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 34 #