data_1DVU # _model_server_result.job_id YccyijzcsjbsPWrStUZCzg _model_server_result.datetime_utc '2024-11-22 09:05:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1dvu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":125}' # _entry.id 1DVU # _exptl.entry_id 1DVU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 256.21 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIBENZOFURAN-4,6-DICARBOXYLIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1DVU _cell.length_a 43.14 _cell.length_b 86 _cell.length_c 65.1 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DVU _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 43.14 86 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H8 O5' _chem_comp.formula_weight 256.21 _chem_comp.id DBF _chem_comp.mon_nstd_flag . _chem_comp.name 'DIBENZOFURAN-4,6-DICARBOXYLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 DBF doub 83 n y C1 C6 DBF sing 84 n y C1 H1 DBF sing 85 n n C2 C3 DBF sing 86 n y C2 C13 DBF sing 87 n n C3 C4 DBF doub 88 n y C3 O DBF sing 89 n y C4 C5 DBF sing 90 n y C4 C9 DBF sing 91 n y C5 C6 DBF doub 92 n y C5 H5 DBF sing 93 n n C6 H6 DBF sing 94 n n O C8 DBF sing 95 n y C7 C8 DBF sing 96 n y C7 C12 DBF doub 97 n y C7 C14 DBF sing 98 n n C8 C9 DBF doub 99 n y C9 C10 DBF sing 100 n y C10 C11 DBF doub 101 n y C10 H10 DBF sing 102 n n C11 C12 DBF sing 103 n y C11 H11 DBF sing 104 n n C12 H12 DBF sing 105 n n O1 C13 DBF doub 106 n n C13 O2 DBF sing 107 n n O2 HO2 DBF sing 108 n n O3 C14 DBF sing 109 n n O3 HO3 DBF sing 110 n n C14 O4 DBF doub 111 n n # _atom_sites.entry_id 1DVU _atom_sites.fract_transf_matrix[1][1] 0.02318 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011628 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015361 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DBF B 1 125 1 DBF DBF . D 3 HOH A 1 125 100 HOH WAT . D 3 HOH A 2 126 101 HOH WAT . D 3 HOH A 3 127 105 HOH WAT . D 3 HOH A 4 128 106 HOH WAT . D 3 HOH A 5 129 107 HOH WAT . D 3 HOH A 6 130 108 HOH WAT . D 3 HOH A 7 131 110 HOH WAT . D 3 HOH A 8 132 116 HOH WAT . D 3 HOH A 9 133 118 HOH WAT . D 3 HOH A 10 134 120 HOH WAT . D 3 HOH A 11 135 122 HOH WAT . D 3 HOH A 12 136 125 HOH WAT . D 3 HOH A 13 137 127 HOH WAT . D 3 HOH A 14 138 128 HOH WAT . D 3 HOH A 15 139 129 HOH WAT . D 3 HOH A 16 140 130 HOH WAT . D 3 HOH A 17 141 131 HOH WAT . D 3 HOH A 18 142 133 HOH WAT . D 3 HOH A 19 143 134 HOH WAT . D 3 HOH A 20 144 135 HOH WAT . D 3 HOH A 21 145 136 HOH WAT . D 3 HOH A 22 146 137 HOH WAT . D 3 HOH A 23 147 139 HOH WAT . D 3 HOH A 24 148 141 HOH WAT . D 3 HOH A 25 149 144 HOH WAT . D 3 HOH A 26 150 146 HOH WAT . D 3 HOH A 27 151 147 HOH WAT . D 3 HOH A 28 152 148 HOH WAT . D 3 HOH A 29 153 149 HOH WAT . E 3 HOH B 1 126 102 HOH WAT . E 3 HOH B 2 127 103 HOH WAT . E 3 HOH B 3 128 104 HOH WAT . E 3 HOH B 4 129 109 HOH WAT . E 3 HOH B 5 130 111 HOH WAT . E 3 HOH B 6 131 112 HOH WAT . E 3 HOH B 7 132 113 HOH WAT . E 3 HOH B 8 133 114 HOH WAT . E 3 HOH B 9 134 115 HOH WAT . E 3 HOH B 10 135 117 HOH WAT . E 3 HOH B 11 136 119 HOH WAT . E 3 HOH B 12 137 121 HOH WAT . E 3 HOH B 13 138 123 HOH WAT . E 3 HOH B 14 139 124 HOH WAT . E 3 HOH B 15 140 126 HOH WAT . E 3 HOH B 16 141 132 HOH WAT . E 3 HOH B 17 142 138 HOH WAT . E 3 HOH B 18 143 140 HOH WAT . E 3 HOH B 19 144 142 HOH WAT . E 3 HOH B 20 145 143 HOH WAT . E 3 HOH B 21 146 145 HOH WAT . E 3 HOH B 22 147 150 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DBF . A . C 2 19.001 41.483 5.328 0.41 35.63 ? C1 DBF 125 B 1 HETATM 2 C C1 DBF . B . C 2 24.104 40.923 27.356 0.42 35.57 ? C1 DBF 125 B 1 HETATM 3 C C2 DBF . A . C 2 19.485 41.871 4.034 0.41 35.41 ? C2 DBF 125 B 1 HETATM 4 C C2 DBF . B . C 2 23.632 41.441 28.609 0.42 35.63 ? C2 DBF 125 B 1 HETATM 5 C C3 DBF . A . C 2 20.739 42.656 3.979 0.41 34.21 ? C3 DBF 125 B 1 HETATM 6 C C3 DBF . B . C 2 22.517 42.414 28.569 0.42 34.45 ? C3 DBF 125 B 1 HETATM 7 C C4 DBF . A . C 2 21.41 42.991 5.229 0.41 34.34 ? C4 DBF 125 B 1 HETATM 8 C C4 DBF . B . C 2 21.963 42.792 27.274 0.42 34.05 ? C4 DBF 125 B 1 HETATM 9 C C5 DBF . A . C 2 20.874 42.572 6.5 0.41 33.84 ? C5 DBF 125 B 1 HETATM 10 C C5 DBF . B . C 2 22.48 42.237 26.05 0.42 34.13 ? C5 DBF 125 B 1 HETATM 11 C C6 DBF . A . C 2 19.678 41.826 6.525 0.41 35.14 ? C6 DBF 125 B 1 HETATM 12 C C6 DBF . B . C 2 23.543 41.312 26.115 0.42 35.31 ? C6 DBF 125 B 1 HETATM 13 O O DBF . A . C 2 21.477 43.187 2.903 0.41 34.81 ? O DBF 125 B 1 HETATM 14 O O DBF . B . C 2 21.826 43.103 29.584 0.42 35.2 ? O DBF 125 B 1 HETATM 15 C C7 DBF . A . C 2 23.721 44.584 2.877 0.41 34.55 ? C7 DBF 125 B 1 HETATM 16 C C7 DBF . B . C 2 19.833 44.834 29.442 0.42 34.59 ? C7 DBF 125 B 1 HETATM 17 C C8 DBF . A . C 2 22.588 43.84 3.472 0.41 33.58 ? C8 DBF 125 B 1 HETATM 18 C C8 DBF . B . C 2 20.859 43.895 28.934 0.42 33.89 ? C8 DBF 125 B 1 HETATM 19 C C9 DBF . A . C 2 22.526 43.706 4.923 0.41 33.5 ? C9 DBF 125 B 1 HETATM 20 C C9 DBF . B . C 2 20.962 43.685 27.495 0.42 33.73 ? C9 DBF 125 B 1 HETATM 21 C C10 DBF . A . C 2 23.539 44.281 5.769 0.41 33.55 ? C10 DBF 125 B 1 HETATM 22 C C10 DBF . B . C 2 20.09 44.371 26.578 0.42 33.19 ? C10 DBF 125 B 1 HETATM 23 C C11 DBF . A . C 2 24.61 44.983 5.176 0.41 34.44 ? C11 DBF 125 B 1 HETATM 24 C C11 DBF . B . C 2 19.121 45.259 27.088 0.42 33.95 ? C11 DBF 125 B 1 HETATM 25 C C12 DBF . A . C 2 24.701 45.132 3.771 0.41 33.65 ? C12 DBF 125 B 1 HETATM 26 C C12 DBF . B . C 2 18.993 45.486 28.479 0.42 33.45 ? C12 DBF 125 B 1 HETATM 27 O O1 DBF . A . C 2 19.09 41.785 1.661 0.41 38.02 ? O1 DBF 125 B 1 HETATM 28 O O1 DBF . B . C 2 23.906 41.401 31.003 0.42 37.29 ? O1 DBF 125 B 1 HETATM 29 C C13 DBF . A . C 2 18.691 41.46 2.801 0.41 36.66 ? C13 DBF 125 B 1 HETATM 30 C C13 DBF . B . C 2 24.298 40.966 29.898 0.42 36.66 ? C13 DBF 125 B 1 HETATM 31 O O2 DBF . A . C 2 17.627 40.79 2.917 0.41 37.72 ? O2 DBF 125 B 1 HETATM 32 O O2 DBF . B . C 2 25.246 40.134 29.865 0.42 37.73 ? O2 DBF 125 B 1 HETATM 33 O O3 DBF . A . C 2 24.89 45.44 0.934 0.41 36.65 ? O3 DBF 125 B 1 HETATM 34 O O3 DBF . B . C 2 18.729 45.949 31.286 0.42 36.92 ? O3 DBF 125 B 1 HETATM 35 C C14 DBF . A . C 2 23.899 44.796 1.378 0.41 35.42 ? C14 DBF 125 B 1 HETATM 36 C C14 DBF . B . C 2 19.624 45.141 30.921 0.42 35.18 ? C14 DBF 125 B 1 HETATM 37 O O4 DBF . A . C 2 23.059 44.332 0.578 0.41 36.29 ? O4 DBF 125 B 1 HETATM 38 O O4 DBF . B . C 2 20.343 44.592 31.78 0.42 36.54 ? O4 DBF 125 B 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 249 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 38 #