data_1DVY # _model_server_result.job_id d_lpbDxUuX27hX7E1EwClw _model_server_result.datetime_utc '2025-01-09 12:16:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1dvy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":125}' # _entry.id 1DVY # _exptl.entry_id 1DVY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 415.319 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'N-(M-TRIFLUOROMETHYLPHENYL) PHENOXAZINE-4,6-DICARBOXYLIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1DVY _cell.length_a 43.29 _cell.length_b 86.03 _cell.length_c 65.23 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DVY _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 43.29 86.03 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H12 F3 N O5' _chem_comp.formula_weight 415.319 _chem_comp.id BPD _chem_comp.mon_nstd_flag . _chem_comp.name 'N-(M-TRIFLUOROMETHYLPHENYL) PHENOXAZINE-4,6-DICARBOXYLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F1 C1 BPD sing 70 n n F2 C1 BPD sing 71 n n F3 C1 BPD sing 72 n n O1 C13 BPD sing 73 n n O1 C21 BPD sing 74 n n O2 C14 BPD doub 75 n n O3 C14 BPD sing 76 n n O3 HO3 BPD sing 77 n n O4 C22 BPD doub 78 n n O5 C22 BPD sing 79 n n O5 HO5 BPD sing 80 n n N1 C6 BPD sing 81 n n N1 C8 BPD sing 82 n n N1 C16 BPD sing 83 n n C1 C2 BPD sing 84 n n C2 C3 BPD doub 85 n y C2 C7 BPD sing 86 n y C3 C4 BPD sing 87 n y C3 H3 BPD sing 88 n n C4 C5 BPD doub 89 n y C4 H4 BPD sing 90 n n C5 C6 BPD sing 91 n y C5 H5 BPD sing 92 n n C6 C7 BPD doub 93 n y C7 H7 BPD sing 94 n n C8 C9 BPD sing 95 n y C8 C13 BPD doub 96 n y C9 C10 BPD doub 97 n y C9 H9 BPD sing 98 n n C10 C11 BPD sing 99 n y C10 H10 BPD sing 100 n n C11 C12 BPD doub 101 n y C11 H11 BPD sing 102 n n C12 C13 BPD sing 103 n y C12 C14 BPD sing 104 n n C16 C17 BPD sing 105 n y C16 C21 BPD doub 106 n y C17 C18 BPD doub 107 n y C17 H17 BPD sing 108 n n C18 C19 BPD sing 109 n y C18 H18 BPD sing 110 n n C19 C20 BPD doub 111 n y C19 H19 BPD sing 112 n n C20 C21 BPD sing 113 n y C20 C22 BPD sing 114 n n # _atom_sites.entry_id 1DVY _atom_sites.fract_transf_matrix[1][1] 0.0231 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011624 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01533 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BPD A 1 125 1 BPD BPP . D 3 HOH A 1 126 100 HOH WAT . D 3 HOH A 2 127 105 HOH WAT . D 3 HOH A 3 128 106 HOH WAT . D 3 HOH A 4 129 107 HOH WAT . D 3 HOH A 5 130 109 HOH WAT . D 3 HOH A 6 131 110 HOH WAT . D 3 HOH A 7 132 115 HOH WAT . D 3 HOH A 8 133 117 HOH WAT . D 3 HOH A 9 134 119 HOH WAT . D 3 HOH A 10 135 120 HOH WAT . D 3 HOH A 11 136 121 HOH WAT . D 3 HOH A 12 137 122 HOH WAT . D 3 HOH A 13 138 123 HOH WAT . D 3 HOH A 14 139 125 HOH WAT . D 3 HOH A 15 140 126 HOH WAT . D 3 HOH A 16 141 128 HOH WAT . D 3 HOH A 17 142 130 HOH WAT . D 3 HOH A 18 143 132 HOH WAT . D 3 HOH A 19 144 135 HOH WAT . D 3 HOH A 20 145 139 HOH WAT . D 3 HOH A 21 146 140 HOH WAT . D 3 HOH A 22 147 147 HOH WAT . D 3 HOH A 23 148 148 HOH WAT . D 3 HOH A 24 149 150 HOH WAT . D 3 HOH A 25 150 153 HOH WAT . D 3 HOH A 26 151 156 HOH WAT . E 3 HOH B 1 125 101 HOH WAT . E 3 HOH B 2 126 102 HOH WAT . E 3 HOH B 3 127 103 HOH WAT . E 3 HOH B 4 128 104 HOH WAT . E 3 HOH B 5 129 108 HOH WAT . E 3 HOH B 6 130 111 HOH WAT . E 3 HOH B 7 131 112 HOH WAT . E 3 HOH B 8 132 113 HOH WAT . E 3 HOH B 9 133 114 HOH WAT . E 3 HOH B 10 134 116 HOH WAT . E 3 HOH B 11 135 124 HOH WAT . E 3 HOH B 12 136 127 HOH WAT . E 3 HOH B 13 137 131 HOH WAT . E 3 HOH B 14 138 133 HOH WAT . E 3 HOH B 15 139 136 HOH WAT . E 3 HOH B 16 140 137 HOH WAT . E 3 HOH B 17 141 138 HOH WAT . E 3 HOH B 18 142 142 HOH WAT . E 3 HOH B 19 143 144 HOH WAT . E 3 HOH B 20 144 145 HOH WAT . E 3 HOH B 21 145 151 HOH WAT . E 3 HOH B 22 146 152 HOH WAT . E 3 HOH B 23 147 154 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 F F1 BPD . A . C 2 21.763 40.8 8.237 0.28 33.3 ? F1 BPD 125 A 1 HETATM 2 F F1 BPD . B . C 2 21.211 40.857 24.214 0.28 33.32 ? F1 BPD 125 A 1 HETATM 3 F F2 BPD . A . C 2 22.059 42.341 9.629 0.28 32.19 ? F2 BPD 125 A 1 HETATM 4 F F2 BPD . B . C 2 21.141 42.424 22.82 0.28 33.04 ? F2 BPD 125 A 1 HETATM 5 F F3 BPD . A . C 2 23.584 41.887 8.222 0.28 33.76 ? F3 BPD 125 A 1 HETATM 6 F F3 BPD . B . C 2 19.584 42.22 24.25 0.28 33.63 ? F3 BPD 125 A 1 HETATM 7 O O1 BPD . A . C 2 22.279 43.005 0.908 0.28 35.73 ? O1 BPD 125 A 1 HETATM 8 O O1 BPD . B . C 2 21.174 43.106 31.538 0.28 36.38 ? O1 BPD 125 A 1 HETATM 9 O O2 BPD . A . C 2 19.953 40.311 -1.376 0.28 34.84 ? O2 BPD 125 A 1 HETATM 10 O O2 BPD . B . C 2 23.08 40.075 33.788 0.28 35.38 ? O2 BPD 125 A 1 HETATM 11 O O3 BPD . A . C 2 21.72 41.607 -1.314 0.28 35.02 ? O3 BPD 125 A 1 HETATM 12 O O3 BPD . B . C 2 21.544 41.64 33.755 0.28 34.5 ? O3 BPD 125 A 1 HETATM 13 O O4 BPD . A . C 2 25.824 44.233 -0.891 0.28 35.12 ? O4 BPD 125 A 1 HETATM 14 O O4 BPD . B . C 2 17.903 44.884 33.398 0.28 35.75 ? O4 BPD 125 A 1 HETATM 15 O O5 BPD . A . C 2 23.845 43.253 -1.023 0.28 37.11 ? O5 BPD 125 A 1 HETATM 16 O O5 BPD . B . C 2 19.7 43.596 33.496 0.28 37.05 ? O5 BPD 125 A 1 HETATM 17 N N1 BPD . A . C 2 21.606 43.599 3.619 0.28 34.35 ? N1 BPD 125 A 1 HETATM 18 N N1 BPD . B . C 2 21.888 43.588 28.817 0.28 34.22 ? N1 BPD 125 A 1 HETATM 19 C C1 BPD . A . C 2 22.29 41.999 8.373 0.28 33.58 ? C1 BPD 125 A 1 HETATM 20 C C1 BPD . B . C 2 20.878 42.124 24.081 0.28 33.98 ? C1 BPD 125 A 1 HETATM 21 C C2 BPD . A . C 2 21.703 42.976 7.4 0.28 33.64 ? C2 BPD 125 A 1 HETATM 22 C C2 BPD . B . C 2 21.628 42.993 25.041 0.28 33.54 ? C2 BPD 125 A 1 HETATM 23 C C3 BPD . A . C 2 20.919 44.064 7.855 0.28 34.06 ? C3 BPD 125 A 1 HETATM 24 C C3 BPD . B . C 2 22.568 43.942 24.571 0.28 34.6 ? C3 BPD 125 A 1 HETATM 25 C C4 BPD . A . C 2 20.379 44.969 6.937 0.28 33.62 ? C4 BPD 125 A 1 HETATM 26 C C4 BPD . B . C 2 23.262 44.748 25.479 0.28 33.74 ? C4 BPD 125 A 1 HETATM 27 C C5 BPD . A . C 2 20.604 44.817 5.554 0.28 34.3 ? C5 BPD 125 A 1 HETATM 28 C C5 BPD . B . C 2 23.039 44.631 26.866 0.28 34.49 ? C5 BPD 125 A 1 HETATM 29 C C6 BPD . A . C 2 21.384 43.738 5.08 0.28 34.12 ? C6 BPD 125 A 1 HETATM 30 C C6 BPD . B . C 2 22.105 43.691 27.354 0.28 34.16 ? C6 BPD 125 A 1 HETATM 31 C C7 BPD . A . C 2 21.943 42.803 6.005 0.28 33.92 ? C7 BPD 125 A 1 HETATM 32 C C7 BPD . B . C 2 21.388 42.859 26.44 0.28 33.89 ? C7 BPD 125 A 1 HETATM 33 C C8 BPD . A . C 2 20.801 42.654 2.847 0.28 34.41 ? C8 BPD 125 A 1 HETATM 34 C C8 BPD . B . C 2 22.545 42.527 29.578 0.28 34.75 ? C8 BPD 125 A 1 HETATM 35 C C9 BPD . A . C 2 19.666 41.988 3.384 0.28 34.7 ? C9 BPD 125 A 1 HETATM 36 C C9 BPD . B . C 2 23.552 41.69 29.024 0.28 34.7 ? C9 BPD 125 A 1 HETATM 37 C C10 BPD . A . C 2 18.915 41.082 2.602 0.28 34.43 ? C10 BPD 125 A 1 HETATM 38 C C10 BPD . B . C 2 24.163 40.678 29.795 0.28 34.89 ? C10 BPD 125 A 1 HETATM 39 C C11 BPD . A . C 2 19.279 40.83 1.294 0.28 35.23 ? C11 BPD 125 A 1 HETATM 40 C C11 BPD . B . C 2 23.785 40.488 31.109 0.28 34.98 ? C11 BPD 125 A 1 HETATM 41 C C12 BPD . A . C 2 20.402 41.454 0.686 0.28 34.87 ? C12 BPD 125 A 1 HETATM 42 C C12 BPD . B . C 2 22.786 41.279 31.734 0.28 35.25 ? C12 BPD 125 A 1 HETATM 43 C C13 BPD . A . C 2 21.168 42.377 1.482 0.28 34.98 ? C13 BPD 125 A 1 HETATM 44 C C13 BPD . B . C 2 22.163 42.311 30.949 0.28 35.22 ? C13 BPD 125 A 1 HETATM 45 C C14 BPD . A . C 2 20.659 41.062 -0.76 0.28 35.09 ? C14 BPD 125 A 1 HETATM 46 C C14 BPD . B . C 2 22.494 40.931 33.184 0.28 35.12 ? C14 BPD 125 A 1 HETATM 47 C C16 BPD . A . C 2 22.866 44.078 3.053 0.28 34.25 ? C16 BPD 125 A 1 HETATM 48 C C16 BPD . B . C 2 20.73 44.26 29.404 0.28 34.69 ? C16 BPD 125 A 1 HETATM 49 C C17 BPD . A . C 2 23.815 44.85 3.781 0.28 34.26 ? C17 BPD 125 A 1 HETATM 50 C C17 BPD . B . C 2 19.904 45.172 28.691 0.28 33.76 ? C17 BPD 125 A 1 HETATM 51 C C18 BPD . A . C 2 25.009 45.284 3.182 0.28 34.23 ? C18 BPD 125 A 1 HETATM 52 C C18 BPD . B . C 2 18.806 45.789 29.31 0.28 34.78 ? C18 BPD 125 A 1 HETATM 53 C C19 BPD . A . C 2 25.3 44.976 1.862 0.28 34.84 ? C19 BPD 125 A 1 HETATM 54 C C19 BPD . B . C 2 18.49 45.531 30.635 0.28 34.5 ? C19 BPD 125 A 1 HETATM 55 C C20 BPD . A . C 2 24.403 44.211 1.068 0.28 35.41 ? C20 BPD 125 A 1 HETATM 56 C C20 BPD . B . C 2 19.267 44.633 31.415 0.28 35.29 ? C20 BPD 125 A 1 HETATM 57 C C21 BPD . A . C 2 23.168 43.756 1.675 0.28 34.86 ? C21 BPD 125 A 1 HETATM 58 C C21 BPD . B . C 2 20.403 43.988 30.786 0.28 35.04 ? C21 BPD 125 A 1 HETATM 59 C C22 BPD . A . C 2 24.806 43.925 -0.366 0.28 35.88 ? C22 BPD 125 A 1 HETATM 60 C C22 BPD . B . C 2 18.848 44.415 32.855 0.28 35.54 ? C22 BPD 125 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 60 #