data_1DW6
#
_model_server_result.job_id            44Y1hZQtkzUP2nCfFgGJgw 
_model_server_result.datetime_utc      '2025-02-17 08:33:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1dw6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":401}' 
#
_entry.id    1DW6 
#
_exptl.entry_id    1DW6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              833.053 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-[(2R)-2-({N~5~-[amino(iminio)methyl]-L-ornithyl-L-valyl}amino)-4-methylpentyl]-L-phenylalanyl-L-alpha-glutamyl-L-alanyl-L-norleucinamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1DW6 
_cell.length_a            52.018 
_cell.length_b            59.566 
_cell.length_c            61.976 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1DW6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C40 H70 N11 O8 1' 
_chem_comp.formula_weight    833.053 
_chem_comp.id                0Q4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-[(2R)-2-({N~5~-[amino(iminio)methyl]-L-ornithyl-L-valyl}amino)-4-methylpentyl]-L-phenylalanyl-L-alpha-glutamyl-L-alanyl-L-norleucinamide 
_chem_comp.type              peptide-like 
_chem_comp.pdbx_synonyms     'Inhibitor analogues of CA-p2' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA 0Q4 sing 1 n n 
N H 0Q4 sing 2 n n 
N H2 0Q4 sing 3 n n 
CA C 0Q4 sing 4 n n 
CA CB 0Q4 sing 5 n n 
CA HA 0Q4 sing 6 n n 
C O 0Q4 doub 7 n n 
CB CG 0Q4 sing 8 n n 
CB HB2 0Q4 sing 9 n n 
CB HB3 0Q4 sing 10 n n 
CG CD 0Q4 sing 11 n n 
CG HG2 0Q4 sing 12 n n 
CG HG3 0Q4 sing 13 n n 
CD NE 0Q4 sing 14 n n 
CD HD2 0Q4 sing 15 n n 
CD HD3 0Q4 sing 16 n n 
NE CZ 0Q4 sing 17 n n 
NE HE 0Q4 sing 18 n n 
CZ NH1 0Q4 sing 19 n n 
CZ NH2 0Q4 doub 20 n n 
NH1 HH11 0Q4 sing 21 n n 
NH1 HH12 0Q4 sing 22 n n 
NH2 HH21 0Q4 sing 23 n n 
NH2 HH22 0Q4 sing 24 n n 
N1 CA1 0Q4 sing 25 n n 
N1 H1 0Q4 sing 26 n n 
CA1 C1 0Q4 sing 27 n n 
CA1 CB1 0Q4 sing 28 n n 
CA1 HA1 0Q4 sing 29 n n 
C1 O1 0Q4 doub 30 n n 
CB1 CG1 0Q4 sing 31 n n 
CB1 CG2 0Q4 sing 32 n n 
CB1 HB 0Q4 sing 33 n n 
CG1 HG11 0Q4 sing 34 n n 
CG1 HG12 0Q4 sing 35 n n 
CG1 HG13 0Q4 sing 36 n n 
CG2 HG21 0Q4 sing 37 n n 
CG2 HG22 0Q4 sing 38 n n 
CG2 HG23 0Q4 sing 39 n n 
N2 CA2 0Q4 sing 40 n n 
N2 HN2 0Q4 sing 41 n n 
CA2 C2 0Q4 sing 42 n n 
CA2 CB2 0Q4 sing 43 n n 
CA2 HA2 0Q4 sing 44 n n 
C2 HC1 0Q4 sing 45 n n 
C2 HC2 0Q4 sing 46 n n 
CB2 CG3 0Q4 sing 47 n n 
CB2 HB1 0Q4 sing 48 n n 
CB2 HB21 0Q4 sing 49 n n 
CG3 CD1 0Q4 sing 50 n n 
CG3 CD2 0Q4 sing 51 n n 
CG3 HG 0Q4 sing 52 n n 
CD1 HD11 0Q4 sing 53 n n 
CD1 HD12 0Q4 sing 54 n n 
CD1 HD13 0Q4 sing 55 n n 
CD2 HD21 0Q4 sing 56 n n 
CD2 HD22 0Q4 sing 57 n n 
CD2 HD23 0Q4 sing 58 n n 
N3 CA3 0Q4 sing 59 n n 
N3 H3 0Q4 sing 60 n n 
CA3 C3 0Q4 sing 61 n n 
CA3 CB3 0Q4 sing 62 n n 
CA3 HA3 0Q4 sing 63 n n 
C3 O2 0Q4 doub 64 n n 
CB3 CG4 0Q4 sing 65 n n 
CB3 HB22 0Q4 sing 66 n n 
CB3 HB31 0Q4 sing 67 n n 
CG4 CD11 0Q4 doub 68 n y 
CG4 CD21 0Q4 sing 69 n y 
CD11 CE1 0Q4 sing 70 n y 
CD11 HD1 0Q4 sing 71 n n 
CD21 CE2 0Q4 doub 72 n y 
CD21 HD24 0Q4 sing 73 n n 
CE1 CZ1 0Q4 doub 74 n y 
CE1 HE1 0Q4 sing 75 n n 
CE2 CZ1 0Q4 sing 76 n y 
CE2 HE2 0Q4 sing 77 n n 
CZ1 HZ 0Q4 sing 78 n n 
N4 CA4 0Q4 sing 79 n n 
N4 H4 0Q4 sing 80 n n 
CA4 C4 0Q4 sing 81 n n 
CA4 CB4 0Q4 sing 82 n n 
CA4 HA4 0Q4 sing 83 n n 
C4 O3 0Q4 doub 84 n n 
CB4 CG5 0Q4 sing 85 n n 
CB4 HB23 0Q4 sing 86 n n 
CB4 HB32 0Q4 sing 87 n n 
CG5 CD3 0Q4 sing 88 n n 
CG5 HG24 0Q4 sing 89 n n 
CG5 HG31 0Q4 sing 90 n n 
CD3 OE1 0Q4 doub 91 n n 
CD3 OE2 0Q4 sing 92 n n 
OE2 HE21 0Q4 sing 93 n n 
N5 CA5 0Q4 sing 94 n n 
N5 H5 0Q4 sing 95 n n 
CA5 C5 0Q4 sing 96 n n 
CA5 CB5 0Q4 sing 97 n n 
CA5 HA5 0Q4 sing 98 n n 
C5 O4 0Q4 doub 99 n n 
CB5 HB11 0Q4 sing 100 n n 
CB5 HB24 0Q4 sing 101 n n 
CB5 HB33 0Q4 sing 102 n n 
N6 CA6 0Q4 sing 103 n n 
N6 H6 0Q4 sing 104 n n 
CA6 C6 0Q4 sing 105 n n 
CA6 CB6 0Q4 sing 106 n n 
CA6 HA6 0Q4 sing 107 n n 
C6 O5 0Q4 doub 108 n n 
CB6 CG6 0Q4 sing 109 n n 
CB6 HB25 0Q4 sing 110 n n 
CB6 HB34 0Q4 sing 111 n n 
CG6 CD4 0Q4 sing 112 n n 
CG6 HG25 0Q4 sing 113 n n 
CG6 HG32 0Q4 sing 114 n n 
CD4 CE 0Q4 sing 115 n n 
CD4 HD25 0Q4 sing 116 n n 
CD4 HD31 0Q4 sing 117 n n 
CE HE11 0Q4 sing 118 n n 
CE HE22 0Q4 sing 119 n n 
CE HE3 0Q4 sing 120 n n 
N7 HN1 0Q4 sing 121 n n 
N7 HN21 0Q4 sing 122 n n 
C N1 0Q4 sing 123 n n 
C1 N2 0Q4 sing 124 n n 
C2 N3 0Q4 sing 125 n n 
C3 N4 0Q4 sing 126 n n 
C4 N5 0Q4 sing 127 n n 
C5 N6 0Q4 sing 128 n n 
C6 N7 0Q4 sing 129 n n 
#
_atom_sites.entry_id                     1DW6 
_atom_sites.fract_transf_matrix[1][1]    0.019224 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016788 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016135 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 0Q4 D 1 401 401 0Q4 ARG . 
D 3 HOH C 1 100 3 HOH HOH . 
D 3 HOH C 2 101 18 HOH HOH . 
D 3 HOH C 3 102 21 HOH HOH . 
D 3 HOH C 4 103 30 HOH HOH . 
D 3 HOH C 5 104 42 HOH HOH . 
D 3 HOH C 6 105 43 HOH HOH . 
D 3 HOH C 7 106 48 HOH HOH . 
D 3 HOH C 8 107 70 HOH HOH . 
D 3 HOH C 9 108 87 HOH HOH . 
D 3 HOH C 10 109 90 HOH HOH . 
D 3 HOH C 11 110 122 HOH HOH . 
D 3 HOH C 12 111 134 HOH HOH . 
D 3 HOH C 13 112 176 HOH HOH . 
D 3 HOH C 14 113 189 HOH HOH . 
D 3 HOH C 15 114 191 HOH HOH . 
D 3 HOH C 16 115 198 HOH HOH . 
D 3 HOH C 17 116 221 HOH HOH . 
D 3 HOH C 18 117 287 HOH HOH . 
D 3 HOH C 19 118 390 HOH HOH . 
E 3 HOH D 1 26 26 HOH HOH . 
E 3 HOH D 2 200 1 HOH HOH . 
E 3 HOH D 3 201 2 HOH HOH . 
E 3 HOH D 4 202 22 HOH HOH . 
E 3 HOH D 5 203 24 HOH HOH . 
E 3 HOH D 6 204 33 HOH HOH . 
E 3 HOH D 7 205 46 HOH HOH . 
E 3 HOH D 8 206 59 HOH HOH . 
E 3 HOH D 9 207 88 HOH HOH . 
E 3 HOH D 10 208 92 HOH HOH . 
E 3 HOH D 11 209 114 HOH HOH . 
E 3 HOH D 12 210 119 HOH HOH . 
E 3 HOH D 13 211 149 HOH HOH . 
E 3 HOH D 14 212 194 HOH HOH . 
E 3 HOH D 15 213 239 HOH HOH . 
E 3 HOH D 16 214 257 HOH HOH . 
E 3 HOH D 17 215 385 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N 0Q4 . . . C 2 17.943 38.433 19.019 1 24.96 ? N 0Q4 401 D 1 
HETATM 2 C CA 0Q4 . . . C 2 18.86 37.794 18.034 1 22.72 ? CA 0Q4 401 D 1 
HETATM 3 C C 0Q4 . . . C 2 18.637 36.29 17.956 1 19.13 ? C 0Q4 401 D 1 
HETATM 4 O O 0Q4 . . . C 2 18.575 35.61 18.97 1 19.02 ? O 0Q4 401 D 1 
HETATM 5 C CB 0Q4 . . . C 2 20.311 38.097 18.402 1 26.37 ? CB 0Q4 401 D 1 
HETATM 6 C CG 0Q4 . . . C 2 20.992 39.052 17.421 1 31.06 ? CG 0Q4 401 D 1 
HETATM 7 C CD 0Q4 . . . C 2 22.246 39.693 18.014 1 33.27 ? CD 0Q4 401 D 1 
HETATM 8 N NE 0Q4 . . . C 2 22.071 41.142 18.214 1 38.05 ? NE 0Q4 401 D 1 
HETATM 9 C CZ 0Q4 . . . C 2 22.499 42.07 17.36 1 41.03 ? CZ 0Q4 401 D 1 
HETATM 10 N NH1 0Q4 . . . C 2 23.141 41.723 16.25 1 45.62 ? NH1 0Q4 401 D 1 
HETATM 11 N NH2 0Q4 . . . C 2 22.206 43.353 17.573 1 42.84 ? NH2 0Q4 401 D 1 
HETATM 12 N N1 0Q4 . . . C 2 18.518 35.774 16.744 1 16.95 ? N1 0Q4 401 D 1 
HETATM 13 C CA1 0Q4 . . . C 2 18.315 34.351 16.526 1 16.96 ? CA1 0Q4 401 D 1 
HETATM 14 C C1 0Q4 . . . C 2 19.497 33.787 15.718 1 17.36 ? C1 0Q4 401 D 1 
HETATM 15 O O1 0Q4 . . . C 2 19.642 34.036 14.517 1 16.79 ? O1 0Q4 401 D 1 
HETATM 16 C CB1 0Q4 . . . C 2 16.943 34.1 15.821 1 18.43 ? CB1 0Q4 401 D 1 
HETATM 17 C CG1 0Q4 . . . C 2 16.752 32.616 15.529 1 17.27 ? CG1 0Q4 401 D 1 
HETATM 18 C CG2 0Q4 . . . C 2 15.789 34.645 16.694 1 17.17 ? CG2 0Q4 401 D 1 
HETATM 19 N N2 0Q4 . . . C 2 20.313 32.979 16.376 1 17.35 ? N2 0Q4 401 D 1 
HETATM 20 C CA2 0Q4 . . . C 2 21.496 32.424 15.727 1 19.44 ? CA2 0Q4 401 D 1 
HETATM 21 C C2 0Q4 . . . C 2 21.433 30.995 15.21 1 20.61 ? C2 0Q4 401 D 1 
HETATM 22 C CB2 0Q4 . . . C 2 22.723 32.641 16.598 1 17.53 ? CB2 0Q4 401 D 1 
HETATM 23 C CG3 0Q4 . . . C 2 22.916 34.127 16.9 1 17.93 ? CG3 0Q4 401 D 1 
HETATM 24 C CD1 0Q4 . . . C 2 23.733 34.298 18.146 1 20.55 ? CD1 0Q4 401 D 1 
HETATM 25 C CD2 0Q4 . . . C 2 23.523 34.839 15.709 1 18.73 ? CD2 0Q4 401 D 1 
HETATM 26 N N3 0Q4 . . . C 2 20.351 30.701 14.505 1 20.48 ? N3 0Q4 401 D 1 
HETATM 27 C CA3 0Q4 . . . C 2 20.191 29.415 13.87 1 18.69 ? CA3 0Q4 401 D 1 
HETATM 28 C C3 0Q4 . . . C 2 21.259 29.392 12.765 1 17.91 ? C3 0Q4 401 D 1 
HETATM 29 O O2 0Q4 . . . C 2 21.541 30.426 12.145 1 16.81 ? O2 0Q4 401 D 1 
HETATM 30 C CB3 0Q4 . . . C 2 18.783 29.297 13.28 1 19.97 ? CB3 0Q4 401 D 1 
HETATM 31 C CG4 0Q4 . . . C 2 18.685 28.318 12.156 1 18.13 ? CG4 0Q4 401 D 1 
HETATM 32 C CD11 0Q4 . . . C 2 18.924 26.973 12.369 1 20.48 ? CD11 0Q4 401 D 1 
HETATM 33 C CD21 0Q4 . . . C 2 18.409 28.752 10.877 1 20.3 ? CD21 0Q4 401 D 1 
HETATM 34 C CE1 0Q4 . . . C 2 18.893 26.066 11.322 1 23.04 ? CE1 0Q4 401 D 1 
HETATM 35 C CE2 0Q4 . . . C 2 18.372 27.865 9.815 1 21.86 ? CE2 0Q4 401 D 1 
HETATM 36 C CZ1 0Q4 . . . C 2 18.616 26.509 10.035 1 22.44 ? CZ1 0Q4 401 D 1 
HETATM 37 N N4 0Q4 . . . C 2 21.859 28.234 12.527 1 17.16 ? N4 0Q4 401 D 1 
HETATM 38 C CA4 0Q4 . . . C 2 22.886 28.129 11.503 1 16.6 ? CA4 0Q4 401 D 1 
HETATM 39 C C4 0Q4 . . . C 2 23.01 26.712 10.932 1 16.91 ? C4 0Q4 401 D 1 
HETATM 40 O O3 0Q4 . . . C 2 22.972 25.728 11.652 1 15.84 ? O3 0Q4 401 D 1 
HETATM 41 C CB4 0Q4 . . . C 2 24.219 28.631 12.078 1 15.67 ? CB4 0Q4 401 D 1 
HETATM 42 C CG5 0Q4 . . . C 2 25.408 28.576 11.132 1 17.27 ? CG5 0Q4 401 D 1 
HETATM 43 C CD3 0Q4 . . . C 2 25.98 27.169 10.979 1 20.73 ? CD3 0Q4 401 D 1 
HETATM 44 O OE1 0Q4 . . . C 2 25.87 26.373 11.942 1 20.64 ? OE1 0Q4 401 D 1 
HETATM 45 O OE2 0Q4 . . . C 2 26.521 26.854 9.889 1 18.91 ? OE2 0Q4 401 D 1 
HETATM 46 N N5 0Q4 . . . C 2 23.166 26.628 9.619 1 18.91 ? N5 0Q4 401 D 1 
HETATM 47 C CA5 0Q4 . . . C 2 23.32 25.362 8.917 1 21.71 ? CA5 0Q4 401 D 1 
HETATM 48 C C5 0Q4 . . . C 2 24.156 25.631 7.658 1 25.66 ? C5 0Q4 401 D 1 
HETATM 49 O O4 0Q4 . . . C 2 23.984 26.662 6.99 1 24.25 ? O4 0Q4 401 D 1 
HETATM 50 C CB5 0Q4 . . . C 2 21.96 24.805 8.553 1 20.66 ? CB5 0Q4 401 D 1 
HETATM 51 N N6 0Q4 . . . C 2 25.088 24.731 7.361 1 29.29 ? N6 0Q4 401 D 1 
HETATM 52 C CA6 0Q4 . . . C 2 25.954 24.881 6.192 1 31.91 ? CA6 0Q4 401 D 1 
HETATM 53 C C6 0Q4 . . . C 2 25.132 24.963 4.903 1 33.71 ? C6 0Q4 401 D 1 
HETATM 54 O O5 0Q4 . . . C 2 25.54 25.71 3.983 1 35.47 ? O5 0Q4 401 D 1 
HETATM 55 C CB6 0Q4 . . . C 2 26.952 23.721 6.123 1 33.73 ? CB6 0Q4 401 D 1 
HETATM 56 C CG6 0Q4 . . . C 2 27.926 23.778 4.941 1 36.73 ? CG6 0Q4 401 D 1 
HETATM 57 C CD4 0Q4 . . . C 2 28.955 24.896 5.074 1 37.56 ? CD4 0Q4 401 D 1 
HETATM 58 C CE 0Q4 . . . C 2 30.01 24.55 6.106 1 38.22 ? CE 0Q4 401 D 1 
HETATM 59 N N7 0Q4 . . . C 2 24.061 24.317 4.849 1 35.24 ? N7 0Q4 401 D 1 
#
_model_server_stats.io_time_ms              49 
_model_server_stats.parse_time_ms           27 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           962 
_model_server_stats.encode_time_ms          14 
_model_server_stats.element_count           59 
#