data_1DWB
#
_model_server_result.job_id            N9hMY77dl_F5EIy33ikPwg 
_model_server_result.datetime_utc      '2024-10-24 04:32:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1dwb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1}' 
#
_entry.id    1DWB 
#
_exptl.entry_id    1DWB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              120.152 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            BENZAMIDINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1DWB 
_cell.length_a            90.8 
_cell.length_b            90.8 
_cell.length_c            132.5 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1DWB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 9 L CYS 1 1_555 B SG CYS 119 H CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? 
disulf ? disulf2 B SG CYS 28 H CYS 42 1_555 B SG CYS 44 H CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? 
disulf ? disulf3 B SG CYS 173 H CYS 168 1_555 B SG CYS 187 H CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf4 B SG CYS 201 H CYS 191 1_555 B SG CYS 231 H CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
#
_chem_comp.formula           'C7 H8 N2' 
_chem_comp.formula_weight    120.152 
_chem_comp.id                BEN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              BENZAMIDINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 BEN doub 70 n y 
C1 C6 BEN sing 71 n y 
C1 C BEN sing 72 n n 
C2 C3 BEN sing 73 n y 
C2 H2 BEN sing 74 n n 
C3 C4 BEN doub 75 n y 
C3 H3 BEN sing 76 n n 
C4 C5 BEN sing 77 n y 
C4 H4 BEN sing 78 n n 
C5 C6 BEN doub 79 n y 
C5 H5 BEN sing 80 n n 
C6 H6 BEN sing 81 n n 
C N1 BEN doub 82 e n 
C N2 BEN sing 83 n n 
N1 HN1 BEN sing 84 n n 
N2 HN21 BEN sing 85 n n 
N2 HN22 BEN sing 86 n n 
#
_atom_sites.entry_id                     1DWB 
_atom_sites.fract_transf_matrix[1][1]    0.011013 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011013 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007547 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 BEN H 1 1 1 BEN BEN . 
E 5 HOH L 1 312 312 HOH HOH . 
E 5 HOH L 2 327 327 HOH HOH . 
E 5 HOH L 3 330 330 HOH HOH . 
E 5 HOH L 4 345 345 HOH HOH . 
F 5 HOH H 1 300 300 HOH HOH . 
F 5 HOH H 2 302 302 HOH HOH . 
F 5 HOH H 3 305 305 HOH HOH . 
F 5 HOH H 4 306 306 HOH HOH . 
F 5 HOH H 5 307 307 HOH HOH . 
F 5 HOH H 6 308 308 HOH HOH . 
F 5 HOH H 7 309 309 HOH HOH . 
F 5 HOH H 8 310 310 HOH HOH . 
F 5 HOH H 9 311 311 HOH HOH . 
F 5 HOH H 10 313 313 HOH HOH . 
F 5 HOH H 11 314 314 HOH HOH . 
F 5 HOH H 12 315 315 HOH HOH . 
F 5 HOH H 13 316 316 HOH HOH . 
F 5 HOH H 14 317 317 HOH HOH . 
F 5 HOH H 15 318 318 HOH HOH . 
F 5 HOH H 16 319 319 HOH HOH . 
F 5 HOH H 17 320 320 HOH HOH . 
F 5 HOH H 18 321 321 HOH HOH . 
F 5 HOH H 19 322 322 HOH HOH . 
F 5 HOH H 20 323 323 HOH HOH . 
F 5 HOH H 21 324 324 HOH HOH . 
F 5 HOH H 22 325 325 HOH HOH . 
F 5 HOH H 23 326 326 HOH HOH . 
F 5 HOH H 24 328 328 HOH HOH . 
F 5 HOH H 25 329 329 HOH HOH . 
F 5 HOH H 26 331 331 HOH HOH . 
F 5 HOH H 27 332 332 HOH HOH . 
F 5 HOH H 28 333 333 HOH HOH . 
F 5 HOH H 29 334 334 HOH HOH . 
F 5 HOH H 30 335 335 HOH HOH . 
F 5 HOH H 31 336 336 HOH HOH . 
F 5 HOH H 32 337 337 HOH HOH . 
F 5 HOH H 33 338 338 HOH HOH . 
F 5 HOH H 34 339 339 HOH HOH . 
F 5 HOH H 35 340 340 HOH HOH . 
F 5 HOH H 36 341 341 HOH HOH . 
F 5 HOH H 37 342 342 HOH HOH . 
F 5 HOH H 38 343 343 HOH HOH . 
F 5 HOH H 39 344 344 HOH HOH . 
F 5 HOH H 40 346 346 HOH HOH . 
F 5 HOH H 41 347 347 HOH HOH . 
G 5 HOH I 1 298 298 HOH HOH . 
G 5 HOH I 2 299 299 HOH HOH . 
G 5 HOH I 3 301 301 HOH HOH . 
G 5 HOH I 4 303 303 HOH HOH . 
G 5 HOH I 5 304 304 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BEN . . . D 4 32.567 19.043 24.775 1 8.97 ? C1 BEN 1 H 1 
HETATM 2 C C2 BEN . . . D 4 31.4 18.382 24.393 1 9.72 ? C2 BEN 1 H 1 
HETATM 3 C C3 BEN . . . D 4 31.452 17.425 23.367 1 7.63 ? C3 BEN 1 H 1 
HETATM 4 C C4 BEN . . . D 4 32.676 17.15 22.727 1 6 ? C4 BEN 1 H 1 
HETATM 5 C C5 BEN . . . D 4 33.844 17.807 23.13 1 7.87 ? C5 BEN 1 H 1 
HETATM 6 C C6 BEN . . . D 4 33.804 18.768 24.148 1 9.1 ? C6 BEN 1 H 1 
HETATM 7 C C BEN . . . D 4 32.526 20.043 25.854 1 8.79 ? C BEN 1 H 1 
HETATM 8 N N1 BEN . . . D 4 31.362 20.358 26.513 1 6.31 ? N1 BEN 1 H 1 
HETATM 9 N N2 BEN . . . D 4 33.636 20.725 26.246 1 11.59 ? N2 BEN 1 H 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           271 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           9 
#