data_1DWE
#
_model_server_result.job_id            3yBxLiNJJix7WBO6niCKmw 
_model_server_result.datetime_utc      '2024-11-21 17:47:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1dwe 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1}' 
#
_entry.id    1DWE 
#
_exptl.entry_id    1DWE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              453.986 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1DWE 
_cell.length_a            90.8 
_cell.length_b            90.8 
_cell.length_c            132.5 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1DWE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 9 L CYS 1 1_555 B SG CYS 119 H CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? 
disulf ? disulf2 B SG CYS 28 H CYS 42 1_555 B SG CYS 44 H CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf3 B SG CYS 173 H CYS 168 1_555 B SG CYS 187 H CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf4 B SG CYS 201 H CYS 191 1_555 B SG CYS 231 H CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
covale ? covale1 D C3 0G6 . H 0G6 1 1_555 B NE2 HIS 43 H HIS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.506 ? 
covale ? covale2 D C2 0G6 . H 0G6 1 1_555 B OG SER 205 H SER 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.477 ? 
#
_chem_comp.formula           'C21 H34 Cl N6 O3 1' 
_chem_comp.formula_weight    453.986 
_chem_comp.id                0G6 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide 
_chem_comp.type              peptide-like 
_chem_comp.pdbx_synonyms     PPACK 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA 0G6 sing 1 n n 
N H 0G6 sing 2 n n 
N H2 0G6 sing 3 n n 
CA C 0G6 sing 4 n n 
CA CB 0G6 sing 5 n n 
CA HA 0G6 sing 6 n n 
C O 0G6 doub 7 n n 
C N1 0G6 sing 8 n n 
CB CG 0G6 sing 9 n n 
CB HB2 0G6 sing 10 n n 
CB HB3 0G6 sing 11 n n 
CG CD1 0G6 doub 12 n y 
CG CD2 0G6 sing 13 n y 
CD1 CE1 0G6 sing 14 n y 
CD1 HD1 0G6 sing 15 n n 
CD2 CE2 0G6 doub 16 n y 
CD2 HD2 0G6 sing 17 n n 
CE1 CZ 0G6 doub 18 n y 
CE1 HE1 0G6 sing 19 n n 
CE2 CZ 0G6 sing 20 n y 
CE2 HE2 0G6 sing 21 n n 
CZ HZ 0G6 sing 22 n n 
N1 CA1 0G6 sing 23 n n 
N1 CD 0G6 sing 24 n n 
CA1 C1 0G6 sing 25 n n 
CA1 CB1 0G6 sing 26 n n 
CA1 HA1 0G6 sing 27 n n 
C1 O1 0G6 doub 28 n n 
C1 N2 0G6 sing 29 n n 
CB1 CG1 0G6 sing 30 n n 
CB1 HB21 0G6 sing 31 n n 
CB1 HB31 0G6 sing 32 n n 
CG1 CD 0G6 sing 33 n n 
CG1 HG2 0G6 sing 34 n n 
CG1 HG3 0G6 sing 35 n n 
CD HD21 0G6 sing 36 n n 
CD HD3 0G6 sing 37 n n 
N2 CA2 0G6 sing 38 n n 
N2 H1 0G6 sing 39 n n 
CA2 C2 0G6 sing 40 n n 
CA2 CB2 0G6 sing 41 n n 
CA2 HA2 0G6 sing 42 n n 
C2 O2 0G6 sing 43 n n 
C2 C3 0G6 sing 44 n n 
CB2 CG2 0G6 sing 45 n n 
CB2 HB22 0G6 sing 46 n n 
CB2 HB32 0G6 sing 47 n n 
CG2 CD3 0G6 sing 48 n n 
CG2 HG21 0G6 sing 49 n n 
CG2 HG31 0G6 sing 50 n n 
CD3 NE 0G6 sing 51 n n 
CD3 HD22 0G6 sing 52 n n 
CD3 HD31 0G6 sing 53 n n 
NE CZ1 0G6 sing 54 n n 
NE HE 0G6 sing 55 n n 
CZ1 NH1 0G6 sing 56 n n 
CZ1 NH2 0G6 doub 57 n n 
NH1 HH11 0G6 sing 58 n n 
NH1 HH12 0G6 sing 59 n n 
NH2 HH21 0G6 sing 60 n n 
NH2 HH22 0G6 sing 61 n n 
C3 H11 0G6 sing 62 n n 
C3 H21 0G6 sing 63 n n 
CL C3 0G6 sing 64 n n 
C2 H33 0G6 sing 65 n n 
O2 H34 0G6 sing 66 n n 
#
_atom_sites.entry_id                     1DWE 
_atom_sites.fract_transf_matrix[1][1]    0.011013 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011013 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007547 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 0G6 H 1 1 1 0G6 DPN . 
E 5 HOH L 1 30 31 HOH HOH . 
E 5 HOH L 2 48 53 HOH HOH . 
E 5 HOH L 3 62 63 HOH HOH . 
F 5 HOH H 1 248 18 HOH HOH . 
F 5 HOH H 2 249 20 HOH HOH . 
F 5 HOH H 3 250 21 HOH HOH . 
F 5 HOH H 4 251 22 HOH HOH . 
F 5 HOH H 5 252 23 HOH HOH . 
F 5 HOH H 6 253 24 HOH HOH . 
F 5 HOH H 7 254 25 HOH HOH . 
F 5 HOH H 8 255 26 HOH HOH . 
F 5 HOH H 9 256 27 HOH HOH . 
F 5 HOH H 10 257 28 HOH HOH . 
F 5 HOH H 11 258 30 HOH HOH . 
F 5 HOH H 12 259 32 HOH HOH . 
F 5 HOH H 13 260 33 HOH HOH . 
F 5 HOH H 14 261 34 HOH HOH . 
F 5 HOH H 15 262 35 HOH HOH . 
F 5 HOH H 16 263 36 HOH HOH . 
F 5 HOH H 17 264 37 HOH HOH . 
F 5 HOH H 18 265 39 HOH HOH . 
F 5 HOH H 19 266 41 HOH HOH . 
F 5 HOH H 20 267 42 HOH HOH . 
F 5 HOH H 21 268 43 HOH HOH . 
F 5 HOH H 22 269 44 HOH HOH . 
F 5 HOH H 23 270 46 HOH HOH . 
F 5 HOH H 24 271 48 HOH HOH . 
F 5 HOH H 25 272 49 HOH HOH . 
F 5 HOH H 26 273 50 HOH HOH . 
F 5 HOH H 27 274 52 HOH HOH . 
F 5 HOH H 28 275 54 HOH HOH . 
F 5 HOH H 29 276 55 HOH HOH . 
F 5 HOH H 30 277 56 HOH HOH . 
F 5 HOH H 31 278 57 HOH HOH . 
F 5 HOH H 32 279 60 HOH HOH . 
F 5 HOH H 33 280 48 HOH HOH . 
F 5 HOH H 34 281 49 HOH HOH . 
F 5 HOH H 35 282 50 HOH HOH . 
F 5 HOH H 36 283 53 HOH HOH . 
F 5 HOH H 37 284 54 HOH HOH . 
F 5 HOH H 38 285 55 HOH HOH . 
F 5 HOH H 39 286 61 HOH HOH . 
F 5 HOH H 40 287 64 HOH HOH . 
F 5 HOH H 41 288 65 HOH HOH . 
F 5 HOH H 42 289 66 HOH HOH . 
F 5 HOH H 43 290 67 HOH HOH . 
F 5 HOH H 44 291 68 HOH HOH . 
F 5 HOH H 45 292 69 HOH HOH . 
F 5 HOH H 46 293 71 HOH HOH . 
F 5 HOH H 47 294 47 HOH HOH . 
F 5 HOH H 48 295 62 HOH HOH . 
F 5 HOH H 49 296 70 HOH HOH . 
G 5 HOH I 1 16 16 HOH HOH . 
G 5 HOH I 2 17 17 HOH HOH . 
G 5 HOH I 3 19 19 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N 0G6 . . . D 4 29.335 13.653 26.051 1 18.82 ? N 0G6 1 H 1 
HETATM 2 C CA 0G6 . . . D 4 30.328 12.594 26.154 1 14.75 ? CA 0G6 1 H 1 
HETATM 3 C C 0G6 . . . D 4 31.487 13.024 25.318 1 14.2 ? C 0G6 1 H 1 
HETATM 4 O O 0G6 . . . D 4 31.969 14.132 25.489 1 17.03 ? O 0G6 1 H 1 
HETATM 5 C CB 0G6 . . . D 4 30.736 12.318 27.647 1 12.25 ? CB 0G6 1 H 1 
HETATM 6 C CG 0G6 . . . D 4 31.685 11.158 27.827 1 11.98 ? CG 0G6 1 H 1 
HETATM 7 C CD1 0G6 . . . D 4 31.357 9.875 27.401 1 11.71 ? CD1 0G6 1 H 1 
HETATM 8 C CD2 0G6 . . . D 4 32.935 11.356 28.424 1 13.67 ? CD2 0G6 1 H 1 
HETATM 9 C CE1 0G6 . . . D 4 32.251 8.809 27.566 1 12.59 ? CE1 0G6 1 H 1 
HETATM 10 C CE2 0G6 . . . D 4 33.842 10.31 28.581 1 14.76 ? CE2 0G6 1 H 1 
HETATM 11 C CZ 0G6 . . . D 4 33.494 9.027 28.153 1 13.84 ? CZ 0G6 1 H 1 
HETATM 12 N N1 0G6 . . . D 4 31.929 12.186 24.407 1 12.21 ? N1 0G6 1 H 1 
HETATM 13 C CA1 0G6 . . . D 4 33.025 12.583 23.566 1 12.92 ? CA1 0G6 1 H 1 
HETATM 14 C C1 0G6 . . . D 4 32.61 13.78 22.747 1 14.4 ? C1 0G6 1 H 1 
HETATM 15 O O1 0G6 . . . D 4 31.437 13.906 22.374 1 18.45 ? O1 0G6 1 H 1 
HETATM 16 C CB1 0G6 . . . D 4 33.292 11.444 22.606 1 12.53 ? CB1 0G6 1 H 1 
HETATM 17 C CG1 0G6 . . . D 4 32.453 10.281 23.087 1 12.93 ? CG1 0G6 1 H 1 
HETATM 18 C CD 0G6 . . . D 4 31.647 10.753 24.291 1 12.25 ? CD 0G6 1 H 1 
HETATM 19 N N2 0G6 . . . D 4 33.574 14.669 22.474 1 12.19 ? N2 0G6 1 H 1 
HETATM 20 C CA2 0G6 . . . D 4 33.32 15.841 21.678 1 10.01 ? CA2 0G6 1 H 1 
HETATM 21 C C2 0G6 . . . D 4 34.193 15.723 20.438 1 13.17 ? C2 0G6 1 H 1 
HETATM 22 O O2 0G6 . . . D 4 33.774 16.598 19.439 1 16.27 ? O2 0G6 1 H 1 
HETATM 23 C CB2 0G6 . . . D 4 33.568 17.128 22.393 1 6 ? CB2 0G6 1 H 1 
HETATM 24 C CG2 0G6 . . . D 4 32.484 17.461 23.365 1 6 ? CG2 0G6 1 H 1 
HETATM 25 C CD3 0G6 . . . D 4 32.833 18.707 24.157 1 8.11 ? CD3 0G6 1 H 1 
HETATM 26 N NE 0G6 . . . D 4 31.809 19.142 25.115 1 11.8 ? NE 0G6 1 H 1 
HETATM 27 C CZ1 0G6 . . . D 4 32.017 20.14 25.976 1 13.2 ? CZ1 0G6 1 H 1 
HETATM 28 N NH1 0G6 . . . D 4 33.178 20.787 26.009 1 15.33 ? NH1 0G6 1 H 1 
HETATM 29 N NH2 0G6 . . . D 4 31.048 20.506 26.819 1 12.52 ? NH2 0G6 1 H 1 
HETATM 30 C C3 0G6 . . . D 4 34.444 14.284 19.8 1 10.59 ? C3 0G6 1 H 1 
#
_model_server_stats.io_time_ms              60 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           336 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           30 
#