data_1DXI # _model_server_result.job_id XdPaS5dfWJwEWGk5J-L9GQ _model_server_result.datetime_utc '2024-12-22 05:59:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1dxi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":390}' # _entry.id 1DXI # _exptl.entry_id 1DXI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1DXI _cell.length_a 137.65 _cell.length_b 137.65 _cell.length_c 132.2 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DXI _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 181 A GLU 181 1_555 C MG MG . A MG 389 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.603 ? metalc ? metalc2 A OE2 GLU 181 A GLU 181 1_555 C MG MG . A MG 389 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc3 A OE2 GLU 217 A GLU 217 1_555 C MG MG . A MG 389 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc4 A OE1 GLU 217 A GLU 217 1_555 D MG MG . A MG 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc5 A NE2 HIS 220 A HIS 220 1_555 D MG MG . A MG 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.761 ? metalc ? metalc6 A OD2 ASP 245 A ASP 245 1_555 C MG MG . A MG 389 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc7 A OD2 ASP 255 A ASP 255 1_555 D MG MG . A MG 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc8 A OD1 ASP 255 A ASP 255 1_555 D MG MG . A MG 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.563 ? metalc ? metalc9 A OD1 ASP 257 A ASP 257 1_555 D MG MG . A MG 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc10 A OD2 ASP 257 A ASP 257 1_555 D MG MG . A MG 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.038 ? metalc ? metalc11 A OD2 ASP 287 A ASP 287 1_555 C MG MG . A MG 389 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc12 C MG MG . A MG 389 1_555 G O HOH . A HOH 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.615 ? metalc ? metalc13 D MG MG . A MG 390 1_555 G O HOH . A HOH 392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.804 ? metalc ? metalc14 B OE2 GLU 181 B GLU 181 1_555 E MG MG . B MG 389 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.68 ? metalc ? metalc15 B OE1 GLU 181 B GLU 181 1_555 E MG MG . B MG 389 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc16 B OE1 GLU 217 B GLU 217 1_555 E MG MG . B MG 389 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc17 B OE2 GLU 217 B GLU 217 1_555 F MG MG . B MG 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.793 ? metalc ? metalc18 B NE2 HIS 220 B HIS 220 1_555 F MG MG . B MG 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.979 ? metalc ? metalc19 B OD2 ASP 245 B ASP 245 1_555 E MG MG . B MG 389 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc20 B OD1 ASP 255 B ASP 255 1_555 F MG MG . B MG 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.557 ? metalc ? metalc21 B OD2 ASP 255 B ASP 255 1_555 F MG MG . B MG 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.925 ? metalc ? metalc22 B OD1 ASP 257 B ASP 257 1_555 F MG MG . B MG 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.798 ? metalc ? metalc23 B OD2 ASP 287 B ASP 287 1_555 E MG MG . B MG 389 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc24 E MG MG . B MG 389 1_555 H O HOH . B HOH 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc25 F MG MG . B MG 390 1_555 H O HOH . B HOH 392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.822 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1DXI _atom_sites.fract_transf_matrix[1][1] 0.007265 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007265 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007564 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 389 389 MG MG . D 2 MG A 1 390 390 MG MG . E 2 MG B 1 389 389 MG MG . F 2 MG B 1 390 390 MG MG . G 3 HOH A 1 391 391 HOH HOH . G 3 HOH A 2 392 392 HOH HOH . H 3 HOH B 1 391 391 HOH HOH . H 3 HOH B 2 392 392 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 2 _atom_site.Cartn_x 18.778 _atom_site.Cartn_y 40.334 _atom_site.Cartn_z 2.843 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 4.66 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 390 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 40 _model_server_stats.query_time_ms 672 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #