data_1DXO # _model_server_result.job_id DlqTrmMNVrqzHhf9DbHj5g _model_server_result.datetime_utc '2024-10-14 04:20:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1dxo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":301}' # _entry.id 1DXO # _exptl.entry_id 1DXO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 76.24 _cell.angle_beta 76.73 _cell.angle_gamma 86.33 _cell.entry_id 1DXO _cell.length_a 55.579 _cell.length_b 56.912 _cell.length_c 97.755 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DXO _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression B,D,G,H,K,L,N,P 1 1 A,C,E,F,I,J,M,O 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 K N N # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 107 n n PA O2A FAD sing 108 n n PA O5B FAD sing 109 n n PA O3P FAD sing 110 n n O2A HOA2 FAD sing 111 n n O5B C5B FAD sing 112 n n C5B C4B FAD sing 113 n n C5B H51A FAD sing 114 n n C5B H52A FAD sing 115 n n C4B O4B FAD sing 116 n n C4B C3B FAD sing 117 n n C4B H4B FAD sing 118 n n O4B C1B FAD sing 119 n n C3B O3B FAD sing 120 n n C3B C2B FAD sing 121 n n C3B H3B FAD sing 122 n n O3B HO3A FAD sing 123 n n C2B O2B FAD sing 124 n n C2B C1B FAD sing 125 n n C2B H2B FAD sing 126 n n O2B HO2A FAD sing 127 n n C1B N9A FAD sing 128 n n C1B H1B FAD sing 129 n n N9A C8A FAD sing 130 n y N9A C4A FAD sing 131 n y C8A N7A FAD doub 132 n y C8A H8A FAD sing 133 n n N7A C5A FAD sing 134 n y C5A C6A FAD sing 135 n y C5A C4A FAD doub 136 n y C6A N6A FAD sing 137 n n C6A N1A FAD doub 138 n y N6A H61A FAD sing 139 n n N6A H62A FAD sing 140 n n N1A C2A FAD sing 141 n y C2A N3A FAD doub 142 n y C2A H2A FAD sing 143 n n N3A C4A FAD sing 144 n y N1 C2 FAD sing 145 n n N1 C10 FAD doub 146 n n C2 O2 FAD doub 147 n n C2 N3 FAD sing 148 n n N3 C4 FAD sing 149 n n N3 HN3 FAD sing 150 n n C4 O4 FAD doub 151 n n C4 C4X FAD sing 152 n n C4X N5 FAD doub 153 n n C4X C10 FAD sing 154 n n N5 C5X FAD sing 155 n n C5X C6 FAD doub 156 n y C5X C9A FAD sing 157 n y C6 C7 FAD sing 158 n y C6 H6 FAD sing 159 n n C7 C7M FAD sing 160 n n C7 C8 FAD doub 161 n y C7M HM71 FAD sing 162 n n C7M HM72 FAD sing 163 n n C7M HM73 FAD sing 164 n n C8 C8M FAD sing 165 n n C8 C9 FAD sing 166 n y C8M HM81 FAD sing 167 n n C8M HM82 FAD sing 168 n n C8M HM83 FAD sing 169 n n C9 C9A FAD doub 170 n y C9 H9 FAD sing 171 n n C9A N10 FAD sing 172 n n N10 C10 FAD sing 173 n n N10 C1' FAD sing 174 n n C1' C2' FAD sing 175 n n C1' "H1'1" FAD sing 176 n n C1' "H1'2" FAD sing 177 n n C2' O2' FAD sing 178 n n C2' C3' FAD sing 179 n n C2' H2' FAD sing 180 n n O2' HO2' FAD sing 181 n n C3' O3' FAD sing 182 n n C3' C4' FAD sing 183 n n C3' H3' FAD sing 184 n n O3' HO3' FAD sing 185 n n C4' O4' FAD sing 186 n n C4' C5' FAD sing 187 n n C4' H4' FAD sing 188 n n O4' HO4' FAD sing 189 n n C5' O5' FAD sing 190 n n C5' "H5'1" FAD sing 191 n n C5' "H5'2" FAD sing 192 n n O5' P FAD sing 193 n n P O1P FAD doub 194 n n P O2P FAD sing 195 n n P O3P FAD sing 196 n n O2P HOP2 FAD sing 197 n n # _atom_sites.entry_id 1DXO _atom_sites.fract_transf_matrix[1][1] 0.017992 _atom_sites.fract_transf_matrix[1][2] -0.001154 _atom_sites.fract_transf_matrix[1][3] -0.004087 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017607 _atom_sites.fract_transf_matrix[2][3] -0.004156 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010799 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 FAD A 1 301 301 FAD FAD . F 3 DQN A 1 302 302 DQN DQN . G 2 FAD B 1 301 301 FAD FAD . H 3 DQN B 1 302 302 DQN DQN . I 2 FAD C 1 301 301 FAD FAD . J 3 DQN C 1 302 302 DQN DQN . K 2 FAD D 1 301 301 FAD FAD . L 3 DQN D 1 302 302 DQN DQN . M 4 HOH A 1 2001 2001 HOH HOH . M 4 HOH A 2 2002 2002 HOH HOH . M 4 HOH A 3 2003 2003 HOH HOH . M 4 HOH A 4 2004 2004 HOH HOH . M 4 HOH A 5 2005 2005 HOH HOH . M 4 HOH A 6 2006 2006 HOH HOH . M 4 HOH A 7 2007 2007 HOH HOH . M 4 HOH A 8 2008 2008 HOH HOH . M 4 HOH A 9 2009 2009 HOH HOH . M 4 HOH A 10 2010 2010 HOH HOH . M 4 HOH A 11 2011 2011 HOH HOH . M 4 HOH A 12 2012 2012 HOH HOH . M 4 HOH A 13 2013 2013 HOH HOH . M 4 HOH A 14 2014 2014 HOH HOH . M 4 HOH A 15 2015 2015 HOH HOH . M 4 HOH A 16 2016 2016 HOH HOH . M 4 HOH A 17 2017 2017 HOH HOH . M 4 HOH A 18 2018 2018 HOH HOH . M 4 HOH A 19 2019 2019 HOH HOH . M 4 HOH A 20 2020 2020 HOH HOH . M 4 HOH A 21 2021 2021 HOH HOH . M 4 HOH A 22 2022 2022 HOH HOH . N 4 HOH B 1 2001 2001 HOH HOH . N 4 HOH B 2 2002 2002 HOH HOH . N 4 HOH B 3 2003 2003 HOH HOH . N 4 HOH B 4 2004 2004 HOH HOH . N 4 HOH B 5 2005 2005 HOH HOH . N 4 HOH B 6 2006 2006 HOH HOH . N 4 HOH B 7 2007 2007 HOH HOH . N 4 HOH B 8 2008 2008 HOH HOH . N 4 HOH B 9 2009 2009 HOH HOH . N 4 HOH B 10 2010 2010 HOH HOH . N 4 HOH B 11 2011 2011 HOH HOH . N 4 HOH B 12 2012 2012 HOH HOH . N 4 HOH B 13 2013 2013 HOH HOH . N 4 HOH B 14 2014 2014 HOH HOH . N 4 HOH B 15 2015 2015 HOH HOH . N 4 HOH B 16 2016 2016 HOH HOH . N 4 HOH B 17 2017 2017 HOH HOH . N 4 HOH B 18 2018 2018 HOH HOH . N 4 HOH B 19 2019 2019 HOH HOH . N 4 HOH B 20 2020 2020 HOH HOH . N 4 HOH B 21 2021 2021 HOH HOH . N 4 HOH B 22 2022 2022 HOH HOH . N 4 HOH B 23 2023 2023 HOH HOH . N 4 HOH B 24 2024 2024 HOH HOH . N 4 HOH B 25 2025 2025 HOH HOH . N 4 HOH B 26 2026 2026 HOH HOH . N 4 HOH B 27 2027 2027 HOH HOH . N 4 HOH B 28 2028 2028 HOH HOH . O 4 HOH C 1 2001 2001 HOH HOH . O 4 HOH C 2 2002 2002 HOH HOH . O 4 HOH C 3 2003 2003 HOH HOH . O 4 HOH C 4 2004 2004 HOH HOH . O 4 HOH C 5 2005 2005 HOH HOH . O 4 HOH C 6 2006 2006 HOH HOH . O 4 HOH C 7 2007 2007 HOH HOH . O 4 HOH C 8 2008 2008 HOH HOH . O 4 HOH C 9 2009 2009 HOH HOH . O 4 HOH C 10 2010 2010 HOH HOH . O 4 HOH C 11 2011 2011 HOH HOH . O 4 HOH C 12 2012 2012 HOH HOH . O 4 HOH C 13 2013 2013 HOH HOH . O 4 HOH C 14 2014 2014 HOH HOH . O 4 HOH C 15 2015 2015 HOH HOH . O 4 HOH C 16 2016 2016 HOH HOH . O 4 HOH C 17 2017 2017 HOH HOH . O 4 HOH C 18 2018 2018 HOH HOH . O 4 HOH C 19 2019 2019 HOH HOH . O 4 HOH C 20 2020 2020 HOH HOH . O 4 HOH C 21 2021 2021 HOH HOH . O 4 HOH C 22 2022 2022 HOH HOH . O 4 HOH C 23 2023 2023 HOH HOH . P 4 HOH D 1 2001 2001 HOH HOH . P 4 HOH D 2 2002 2002 HOH HOH . P 4 HOH D 3 2003 2003 HOH HOH . P 4 HOH D 4 2004 2004 HOH HOH . P 4 HOH D 5 2005 2005 HOH HOH . P 4 HOH D 6 2006 2006 HOH HOH . P 4 HOH D 7 2007 2007 HOH HOH . P 4 HOH D 8 2008 2008 HOH HOH . P 4 HOH D 9 2009 2009 HOH HOH . P 4 HOH D 10 2010 2010 HOH HOH . P 4 HOH D 11 2011 2011 HOH HOH . P 4 HOH D 12 2012 2012 HOH HOH . P 4 HOH D 13 2013 2013 HOH HOH . P 4 HOH D 14 2014 2014 HOH HOH . P 4 HOH D 15 2015 2015 HOH HOH . P 4 HOH D 16 2016 2016 HOH HOH . P 4 HOH D 17 2017 2017 HOH HOH . P 4 HOH D 18 2018 2018 HOH HOH . P 4 HOH D 19 2019 2019 HOH HOH . P 4 HOH D 20 2020 2020 HOH HOH . P 4 HOH D 21 2021 2021 HOH HOH . P 4 HOH D 22 2022 2022 HOH HOH . P 4 HOH D 23 2023 2023 HOH HOH . P 4 HOH D 24 2024 2024 HOH HOH . P 4 HOH D 25 2025 2025 HOH HOH . P 4 HOH D 26 2026 2026 HOH HOH . P 4 HOH D 27 2027 2027 HOH HOH . P 4 HOH D 28 2028 2028 HOH HOH . P 4 HOH D 29 2029 2029 HOH HOH . P 4 HOH D 30 2030 2030 HOH HOH . P 4 HOH D 31 2031 2031 HOH HOH . P 4 HOH D 32 2032 2032 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . K 2 -41.96 -63.24 -39.534 1 29.65 ? PA FAD 301 D 1 HETATM 2 O O1A FAD . . . K 2 -43.076 -62.616 -40.303 1 31.55 ? O1A FAD 301 D 1 HETATM 3 O O2A FAD . . . K 2 -42.25 -64.32 -38.774 1 29.66 ? O2A FAD 301 D 1 HETATM 4 O O5B FAD . . . K 2 -41.231 -63.784 -40.719 1 29.4 ? O5B FAD 301 D 1 HETATM 5 C C5B FAD . . . K 2 -40.024 -64.522 -40.733 1 30.11 ? C5B FAD 301 D 1 HETATM 6 C C4B FAD . . . K 2 -40.293 -65.601 -41.835 1 30.15 ? C4B FAD 301 D 1 HETATM 7 O O4B FAD . . . K 2 -39.081 -66.459 -41.866 1 31.5 ? O4B FAD 301 D 1 HETATM 8 C C3B FAD . . . K 2 -41.499 -66.588 -41.594 1 30.91 ? C3B FAD 301 D 1 HETATM 9 O O3B FAD . . . K 2 -42.185 -67.002 -42.756 1 31.58 ? O3B FAD 301 D 1 HETATM 10 C C2B FAD . . . K 2 -40.842 -67.725 -40.794 1 30.76 ? C2B FAD 301 D 1 HETATM 11 O O2B FAD . . . K 2 -41.573 -68.922 -40.852 1 29.75 ? O2B FAD 301 D 1 HETATM 12 C C1B FAD . . . K 2 -39.47 -67.823 -41.44 1 31.15 ? C1B FAD 301 D 1 HETATM 13 N N9A FAD . . . K 2 -38.37 -68.224 -40.566 1 30.82 ? N9A FAD 301 D 1 HETATM 14 C C8A FAD . . . K 2 -38.282 -68.059 -39.184 1 30.17 ? C8A FAD 301 D 1 HETATM 15 N N7A FAD . . . K 2 -37.144 -68.546 -38.676 1 30.73 ? N7A FAD 301 D 1 HETATM 16 C C5A FAD . . . K 2 -36.456 -69.048 -39.772 1 31.03 ? C5A FAD 301 D 1 HETATM 17 C C6A FAD . . . K 2 -35.135 -69.723 -39.901 1 31.44 ? C6A FAD 301 D 1 HETATM 18 N N6A FAD . . . K 2 -34.334 -69.973 -38.878 1 30.7 ? N6A FAD 301 D 1 HETATM 19 N N1A FAD . . . K 2 -34.786 -70.082 -41.212 1 31.21 ? N1A FAD 301 D 1 HETATM 20 C C2A FAD . . . K 2 -35.606 -69.835 -42.295 1 29.8 ? C2A FAD 301 D 1 HETATM 21 N N3A FAD . . . K 2 -36.822 -69.234 -42.261 1 28.84 ? N3A FAD 301 D 1 HETATM 22 C C4A FAD . . . K 2 -37.203 -68.86 -40.989 1 30.15 ? C4A FAD 301 D 1 HETATM 23 N N1 FAD . . . K 2 -42.888 -53.095 -42.932 1 19.77 ? N1 FAD 301 D 1 HETATM 24 C C2 FAD . . . K 2 -42.459 -52.158 -43.783 1 19.89 ? C2 FAD 301 D 1 HETATM 25 O O2 FAD . . . K 2 -41.974 -52.442 -44.845 1 19.32 ? O2 FAD 301 D 1 HETATM 26 N N3 FAD . . . K 2 -42.49 -50.754 -43.435 1 19.04 ? N3 FAD 301 D 1 HETATM 27 C C4 FAD . . . K 2 -43.057 -50.315 -42.227 1 18.67 ? C4 FAD 301 D 1 HETATM 28 O O4 FAD . . . K 2 -43.057 -49.135 -41.977 1 19.06 ? O4 FAD 301 D 1 HETATM 29 C C4X FAD . . . K 2 -43.636 -51.337 -41.328 1 17.64 ? C4X FAD 301 D 1 HETATM 30 N N5 FAD . . . K 2 -44.223 -50.971 -40.129 1 15.89 ? N5 FAD 301 D 1 HETATM 31 C C5X FAD . . . K 2 -44.657 -51.976 -39.278 1 15.86 ? C5X FAD 301 D 1 HETATM 32 C C6 FAD . . . K 2 -45.26 -51.59 -38.038 1 16.01 ? C6 FAD 301 D 1 HETATM 33 C C7 FAD . . . K 2 -45.709 -52.542 -37.106 1 15.31 ? C7 FAD 301 D 1 HETATM 34 C C7M FAD . . . K 2 -46.339 -52.071 -35.811 1 15.63 ? C7M FAD 301 D 1 HETATM 35 C C8 FAD . . . K 2 -45.559 -53.979 -37.39 1 14.62 ? C8 FAD 301 D 1 HETATM 36 C C8M FAD . . . K 2 -46.007 -55.056 -36.436 1 13.69 ? C8M FAD 301 D 1 HETATM 37 C C9 FAD . . . K 2 -44.97 -54.378 -38.614 1 15.73 ? C9 FAD 301 D 1 HETATM 38 C C9A FAD . . . K 2 -44.516 -53.397 -39.565 1 16.59 ? C9A FAD 301 D 1 HETATM 39 N N10 FAD . . . K 2 -43.89 -53.738 -40.865 1 18.31 ? N10 FAD 301 D 1 HETATM 40 C C10 FAD . . . K 2 -43.463 -52.759 -41.722 1 18.14 ? C10 FAD 301 D 1 HETATM 41 C C1' FAD . . . K 2 -43.721 -55.192 -41.22 1 18.18 ? C1' FAD 301 D 1 HETATM 42 C C2' FAD . . . K 2 -42.487 -55.855 -40.491 1 19.33 ? C2' FAD 301 D 1 HETATM 43 O O2' FAD . . . K 2 -41.276 -55.179 -40.85 1 17.41 ? O2' FAD 301 D 1 HETATM 44 C C3' FAD . . . K 2 -42.459 -57.319 -40.913 1 21.07 ? C3' FAD 301 D 1 HETATM 45 O O3' FAD . . . K 2 -43.701 -57.931 -40.509 1 22.74 ? O3' FAD 301 D 1 HETATM 46 C C4' FAD . . . K 2 -41.275 -58.07 -40.257 1 22.13 ? C4' FAD 301 D 1 HETATM 47 O O4' FAD . . . K 2 -40.037 -57.477 -40.643 1 20.99 ? O4' FAD 301 D 1 HETATM 48 C C5' FAD . . . K 2 -41.345 -59.53 -40.691 1 23.71 ? C5' FAD 301 D 1 HETATM 49 O O5' FAD . . . K 2 -40.15 -60.313 -40.066 1 26.61 ? O5' FAD 301 D 1 HETATM 50 P P FAD . . . K 2 -40.189 -61.028 -38.716 1 28.13 ? P FAD 301 D 1 HETATM 51 O O1P FAD . . . K 2 -38.786 -61.617 -38.491 1 28.38 ? O1P FAD 301 D 1 HETATM 52 O O2P FAD . . . K 2 -40.67 -60.189 -37.733 1 29.68 ? O2P FAD 301 D 1 HETATM 53 O O3P FAD . . . K 2 -41.156 -62.122 -38.653 1 29.19 ? O3P FAD 301 D 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 53 #