data_1DXQ # _model_server_result.job_id ZH-JwtwMMj_hC3rbB19aRg _model_server_result.datetime_utc '2024-11-30 07:21:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1dxq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":300}' # _entry.id 1DXQ # _exptl.entry_id 1DXQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 112.3 _cell.angle_gamma 90 _cell.entry_id 1DXQ _cell.length_a 54.96 _cell.length_b 171.62 _cell.length_c 67.14 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DXQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS dimeric 2 software_defined_assembly 1 PQS dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,G 1 1 B,D,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 83 n n PA O2A FAD sing 84 n n PA O5B FAD sing 85 n n PA O3P FAD sing 86 n n O2A HOA2 FAD sing 87 n n O5B C5B FAD sing 88 n n C5B C4B FAD sing 89 n n C5B H51A FAD sing 90 n n C5B H52A FAD sing 91 n n C4B O4B FAD sing 92 n n C4B C3B FAD sing 93 n n C4B H4B FAD sing 94 n n O4B C1B FAD sing 95 n n C3B O3B FAD sing 96 n n C3B C2B FAD sing 97 n n C3B H3B FAD sing 98 n n O3B HO3A FAD sing 99 n n C2B O2B FAD sing 100 n n C2B C1B FAD sing 101 n n C2B H2B FAD sing 102 n n O2B HO2A FAD sing 103 n n C1B N9A FAD sing 104 n n C1B H1B FAD sing 105 n n N9A C8A FAD sing 106 n y N9A C4A FAD sing 107 n y C8A N7A FAD doub 108 n y C8A H8A FAD sing 109 n n N7A C5A FAD sing 110 n y C5A C6A FAD sing 111 n y C5A C4A FAD doub 112 n y C6A N6A FAD sing 113 n n C6A N1A FAD doub 114 n y N6A H61A FAD sing 115 n n N6A H62A FAD sing 116 n n N1A C2A FAD sing 117 n y C2A N3A FAD doub 118 n y C2A H2A FAD sing 119 n n N3A C4A FAD sing 120 n y N1 C2 FAD sing 121 n n N1 C10 FAD doub 122 n n C2 O2 FAD doub 123 n n C2 N3 FAD sing 124 n n N3 C4 FAD sing 125 n n N3 HN3 FAD sing 126 n n C4 O4 FAD doub 127 n n C4 C4X FAD sing 128 n n C4X N5 FAD doub 129 n n C4X C10 FAD sing 130 n n N5 C5X FAD sing 131 n n C5X C6 FAD doub 132 n y C5X C9A FAD sing 133 n y C6 C7 FAD sing 134 n y C6 H6 FAD sing 135 n n C7 C7M FAD sing 136 n n C7 C8 FAD doub 137 n y C7M HM71 FAD sing 138 n n C7M HM72 FAD sing 139 n n C7M HM73 FAD sing 140 n n C8 C8M FAD sing 141 n n C8 C9 FAD sing 142 n y C8M HM81 FAD sing 143 n n C8M HM82 FAD sing 144 n n C8M HM83 FAD sing 145 n n C9 C9A FAD doub 146 n y C9 H9 FAD sing 147 n n C9A N10 FAD sing 148 n n N10 C10 FAD sing 149 n n N10 C1' FAD sing 150 n n C1' C2' FAD sing 151 n n C1' "H1'1" FAD sing 152 n n C1' "H1'2" FAD sing 153 n n C2' O2' FAD sing 154 n n C2' C3' FAD sing 155 n n C2' H2' FAD sing 156 n n O2' HO2' FAD sing 157 n n C3' O3' FAD sing 158 n n C3' C4' FAD sing 159 n n C3' H3' FAD sing 160 n n O3' HO3' FAD sing 161 n n C4' O4' FAD sing 162 n n C4' C5' FAD sing 163 n n C4' H4' FAD sing 164 n n O4' HO4' FAD sing 165 n n C5' O5' FAD sing 166 n n C5' "H5'1" FAD sing 167 n n C5' "H5'2" FAD sing 168 n n O5' P FAD sing 169 n n P O1P FAD doub 170 n n P O2P FAD sing 171 n n P O3P FAD sing 172 n n O2P HOP2 FAD sing 173 n n # _atom_sites.entry_id 1DXQ _atom_sites.fract_transf_matrix[1][1] 0.018195 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007462 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005827 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016098 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 FAD A 1 300 300 FAD FAD . F 2 FAD B 1 300 300 FAD FAD . G 2 FAD C 1 300 300 FAD FAD . H 2 FAD D 1 300 300 FAD FAD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . F 2 -25.786 -17.69 42.323 1 28.26 ? PA FAD 300 B 1 HETATM 2 O O1A FAD . . . F 2 -26.996 -18.498 42.043 1 28.92 ? O1A FAD 300 B 1 HETATM 3 O O2A FAD . . . F 2 -25.392 -16.805 41.373 1 25.16 ? O2A FAD 300 B 1 HETATM 4 O O5B FAD . . . F 2 -26.304 -16.887 43.468 1 31.69 ? O5B FAD 300 B 1 HETATM 5 C C5B FAD . . . F 2 -25.487 -15.915 44.189 1 33.93 ? C5B FAD 300 B 1 HETATM 6 C C4B FAD . . . F 2 -26.444 -14.936 44.912 1 34.88 ? C4B FAD 300 B 1 HETATM 7 O O4B FAD . . . F 2 -25.541 -13.962 45.591 1 38.4 ? O4B FAD 300 B 1 HETATM 8 C C3B FAD . . . F 2 -27.337 -14.066 43.999 1 36.38 ? C3B FAD 300 B 1 HETATM 9 O O3B FAD . . . F 2 -28.511 -13.653 44.627 1 35.76 ? O3B FAD 300 B 1 HETATM 10 C C2B FAD . . . F 2 -26.337 -12.952 43.575 1 38.63 ? C2B FAD 300 B 1 HETATM 11 O O2B FAD . . . F 2 -26.965 -11.793 43.074 1 42.8 ? O2B FAD 300 B 1 HETATM 12 C C1B FAD . . . F 2 -25.561 -12.686 44.843 1 39.61 ? C1B FAD 300 B 1 HETATM 13 N N9A FAD . . . F 2 -24.121 -12.351 44.675 1 40.49 ? N9A FAD 300 B 1 HETATM 14 C C8A FAD . . . F 2 -23.291 -12.728 43.636 1 40.61 ? C8A FAD 300 B 1 HETATM 15 N N7A FAD . . . F 2 -22.048 -12.264 43.759 1 41.64 ? N7A FAD 300 B 1 HETATM 16 C C5A FAD . . . F 2 -22.049 -11.543 44.938 1 41.54 ? C5A FAD 300 B 1 HETATM 17 C C6A FAD . . . F 2 -20.973 -10.765 45.65 1 41.38 ? C6A FAD 300 B 1 HETATM 18 N N6A FAD . . . F 2 -19.747 -10.638 45.211 1 43.29 ? N6A FAD 300 B 1 HETATM 19 N N1A FAD . . . F 2 -21.362 -10.162 46.844 1 40.48 ? N1A FAD 300 B 1 HETATM 20 C C2A FAD . . . F 2 -22.651 -10.272 47.336 1 41.4 ? C2A FAD 300 B 1 HETATM 21 N N3A FAD . . . F 2 -23.696 -10.952 46.759 1 42.65 ? N3A FAD 300 B 1 HETATM 22 C C4A FAD . . . F 2 -23.347 -11.577 45.552 1 41.68 ? C4A FAD 300 B 1 HETATM 23 N N1 FAD . . . F 2 -28.505 -27.492 45.344 1 36.22 ? N1 FAD 300 B 1 HETATM 24 C C2 FAD . . . F 2 -28.585 -28.322 46.397 1 36.17 ? C2 FAD 300 B 1 HETATM 25 O O2 FAD . . . F 2 -28.771 -27.922 47.512 1 36.23 ? O2 FAD 300 B 1 HETATM 26 N N3 FAD . . . F 2 -28.416 -29.741 46.258 1 35.29 ? N3 FAD 300 B 1 HETATM 27 C C4 FAD . . . F 2 -28.206 -30.339 45.018 1 35.8 ? C4 FAD 300 B 1 HETATM 28 O O4 FAD . . . F 2 -28.066 -31.546 44.954 1 35.39 ? O4 FAD 300 B 1 HETATM 29 C C4X FAD . . . F 2 -28.172 -29.454 43.847 1 36.03 ? C4X FAD 300 B 1 HETATM 30 N N5 FAD . . . F 2 -27.978 -29.984 42.593 1 36.34 ? N5 FAD 300 B 1 HETATM 31 C C5X FAD . . . F 2 -27.903 -29.121 41.521 1 35.09 ? C5X FAD 300 B 1 HETATM 32 C C6 FAD . . . F 2 -27.709 -29.7 40.229 1 32.77 ? C6 FAD 300 B 1 HETATM 33 C C7 FAD . . . F 2 -27.622 -28.907 39.09 1 33.83 ? C7 FAD 300 B 1 HETATM 34 C C7M FAD . . . F 2 -27.422 -29.563 37.739 1 33.39 ? C7M FAD 300 B 1 HETATM 35 C C8 FAD . . . F 2 -27.728 -27.44 39.204 1 35.25 ? C8 FAD 300 B 1 HETATM 36 C C8M FAD . . . F 2 -27.642 -26.523 38.005 1 36.09 ? C8M FAD 300 B 1 HETATM 37 C C9 FAD . . . F 2 -27.921 -26.846 40.479 1 35.77 ? C9 FAD 300 B 1 HETATM 38 C C9A FAD . . . F 2 -28.011 -27.663 41.644 1 35.91 ? C9A FAD 300 B 1 HETATM 39 N N10 FAD . . . F 2 -28.221 -27.135 43.018 1 35.86 ? N10 FAD 300 B 1 HETATM 40 C C10 FAD . . . F 2 -28.304 -27.984 44.082 1 36.29 ? C10 FAD 300 B 1 HETATM 41 C C1' FAD . . . F 2 -28.335 -25.656 43.223 1 34.5 ? C1' FAD 300 B 1 HETATM 42 C C2' FAD . . . F 2 -26.915 -25.012 43.357 1 34.92 ? C2' FAD 300 B 1 HETATM 43 O O2' FAD . . . F 2 -26.266 -25.6 44.474 1 33.08 ? O2' FAD 300 B 1 HETATM 44 C C3' FAD . . . F 2 -27.034 -23.483 43.554 1 34.06 ? C3' FAD 300 B 1 HETATM 45 O O3' FAD . . . F 2 -27.703 -22.924 42.412 1 37.2 ? O3' FAD 300 B 1 HETATM 46 C C4' FAD . . . F 2 -25.626 -22.849 43.665 1 33.24 ? C4' FAD 300 B 1 HETATM 47 O O4' FAD . . . F 2 -24.922 -23.389 44.774 1 30.6 ? O4' FAD 300 B 1 HETATM 48 C C5' FAD . . . F 2 -25.753 -21.351 43.821 1 32.02 ? C5' FAD 300 B 1 HETATM 49 O O5' FAD . . . F 2 -24.307 -20.745 43.891 1 31.96 ? O5' FAD 300 B 1 HETATM 50 P P FAD . . . F 2 -23.822 -19.709 42.872 1 33.21 ? P FAD 300 B 1 HETATM 51 O O1P FAD . . . F 2 -22.378 -19.37 43.211 1 34.97 ? O1P FAD 300 B 1 HETATM 52 O O2P FAD . . . F 2 -24.072 -20.099 41.571 1 36.41 ? O2P FAD 300 B 1 HETATM 53 O O3P FAD . . . F 2 -24.572 -18.497 43.019 1 29.37 ? O3P FAD 300 B 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 217 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 53 #