data_1DYD
#
_model_server_result.job_id            Gjyyba7Yz29D6qHUAFuLtQ 
_model_server_result.datetime_utc      '2024-11-22 20:38:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1dyd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":900}' 
#
_entry.id    1DYD 
#
_exptl.entry_id    1DYD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              78.133 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            BETA-MERCAPTOETHANOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1DYD 
_cell.length_a            61.2 
_cell.length_b            61.2 
_cell.length_c            96.2 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1DYD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 97 A CYS 97 1_555 D S2 BME . A BME 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? 
covale ? covale2 E S2 BME . A BME 900 1_555 E S2 BME . A BME 900 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
#
_chem_comp.formula           'C2 H6 O S' 
_chem_comp.formula_weight    78.133 
_chem_comp.id                BME 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              BETA-MERCAPTOETHANOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1DYD 
_atom_sites.fract_transf_matrix[1][1]    0.01634 
_atom_sites.fract_transf_matrix[1][2]    0.009434 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018868 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010395 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CL A 1 173 173 CL CL . 
C 2 CL A 1 178 178 CL CL . 
D 3 BME A 1 179 97 BME SEO . 
E 3 BME A 1 900 900 BME SEO . 
F 4 HOH A 1 901 171 HOH HOH . 
F 4 HOH A 2 902 172 HOH HOH . 
F 4 HOH A 3 903 174 HOH HOH . 
F 4 HOH A 4 904 175 HOH HOH . 
F 4 HOH A 5 905 176 HOH HOH . 
F 4 HOH A 6 906 177 HOH HOH . 
F 4 HOH A 7 907 179 HOH HOH . 
F 4 HOH A 8 908 180 HOH HOH . 
F 4 HOH A 9 909 181 HOH HOH . 
F 4 HOH A 10 910 182 HOH HOH . 
F 4 HOH A 11 911 183 HOH HOH . 
F 4 HOH A 12 912 184 HOH HOH . 
F 4 HOH A 13 913 185 HOH HOH . 
F 4 HOH A 14 914 186 HOH HOH . 
F 4 HOH A 15 915 187 HOH HOH . 
F 4 HOH A 16 916 188 HOH HOH . 
F 4 HOH A 17 917 189 HOH HOH . 
F 4 HOH A 18 918 190 HOH HOH . 
F 4 HOH A 19 919 191 HOH HOH . 
F 4 HOH A 20 920 192 HOH HOH . 
F 4 HOH A 21 921 193 HOH HOH . 
F 4 HOH A 22 922 194 HOH HOH . 
F 4 HOH A 23 923 195 HOH HOH . 
F 4 HOH A 24 924 196 HOH HOH . 
F 4 HOH A 25 925 197 HOH HOH . 
F 4 HOH A 26 926 198 HOH HOH . 
F 4 HOH A 27 927 199 HOH HOH . 
F 4 HOH A 28 928 200 HOH HOH . 
F 4 HOH A 29 929 201 HOH HOH . 
F 4 HOH A 30 930 202 HOH HOH . 
F 4 HOH A 31 931 203 HOH HOH . 
F 4 HOH A 32 932 204 HOH HOH . 
F 4 HOH A 33 933 206 HOH HOH . 
F 4 HOH A 34 934 207 HOH HOH . 
F 4 HOH A 35 935 208 HOH HOH . 
F 4 HOH A 36 936 209 HOH HOH . 
F 4 HOH A 37 937 210 HOH HOH . 
F 4 HOH A 38 938 211 HOH HOH . 
F 4 HOH A 39 939 212 HOH HOH . 
F 4 HOH A 40 940 213 HOH HOH . 
F 4 HOH A 41 941 214 HOH HOH . 
F 4 HOH A 42 942 215 HOH HOH . 
F 4 HOH A 43 943 216 HOH HOH . 
F 4 HOH A 44 944 217 HOH HOH . 
F 4 HOH A 45 945 218 HOH HOH . 
F 4 HOH A 46 946 219 HOH HOH . 
F 4 HOH A 47 947 220 HOH HOH . 
F 4 HOH A 48 948 221 HOH HOH . 
F 4 HOH A 49 949 222 HOH HOH . 
F 4 HOH A 50 950 223 HOH HOH . 
F 4 HOH A 51 951 224 HOH HOH . 
F 4 HOH A 52 952 225 HOH HOH . 
F 4 HOH A 53 953 226 HOH HOH . 
F 4 HOH A 54 954 227 HOH HOH . 
F 4 HOH A 55 955 228 HOH HOH . 
F 4 HOH A 56 956 229 HOH HOH . 
F 4 HOH A 57 957 230 HOH HOH . 
F 4 HOH A 58 958 231 HOH HOH . 
F 4 HOH A 59 959 232 HOH HOH . 
F 4 HOH A 60 960 233 HOH HOH . 
F 4 HOH A 61 961 234 HOH HOH . 
F 4 HOH A 62 962 235 HOH HOH . 
F 4 HOH A 63 963 236 HOH HOH . 
F 4 HOH A 64 964 237 HOH HOH . 
F 4 HOH A 65 965 238 HOH HOH . 
F 4 HOH A 66 966 239 HOH HOH . 
F 4 HOH A 67 967 240 HOH HOH . 
F 4 HOH A 68 968 242 HOH HOH . 
F 4 HOH A 69 969 243 HOH HOH . 
F 4 HOH A 70 970 244 HOH HOH . 
F 4 HOH A 71 971 245 HOH HOH . 
F 4 HOH A 72 972 246 HOH HOH . 
F 4 HOH A 73 973 247 HOH HOH . 
F 4 HOH A 74 974 248 HOH HOH . 
F 4 HOH A 75 975 249 HOH HOH . 
F 4 HOH A 76 976 250 HOH HOH . 
F 4 HOH A 77 977 251 HOH HOH . 
F 4 HOH A 78 978 252 HOH HOH . 
F 4 HOH A 79 979 253 HOH HOH . 
F 4 HOH A 80 980 254 HOH HOH . 
F 4 HOH A 81 981 255 HOH HOH . 
F 4 HOH A 82 982 256 HOH HOH . 
F 4 HOH A 83 983 257 HOH HOH . 
F 4 HOH A 84 984 258 HOH HOH . 
F 4 HOH A 85 985 259 HOH HOH . 
F 4 HOH A 86 986 260 HOH HOH . 
F 4 HOH A 87 987 261 HOH HOH . 
F 4 HOH A 88 988 262 HOH HOH . 
F 4 HOH A 89 989 263 HOH HOH . 
F 4 HOH A 90 990 264 HOH HOH . 
F 4 HOH A 91 991 265 HOH HOH . 
F 4 HOH A 92 992 266 HOH HOH . 
F 4 HOH A 93 993 267 HOH HOH . 
F 4 HOH A 94 994 268 HOH HOH . 
F 4 HOH A 95 995 269 HOH HOH . 
F 4 HOH A 96 996 270 HOH HOH . 
F 4 HOH A 97 997 271 HOH HOH . 
F 4 HOH A 98 998 272 HOH HOH . 
F 4 HOH A 99 999 273 HOH HOH . 
F 4 HOH A 100 1000 274 HOH HOH . 
F 4 HOH A 101 1001 275 HOH HOH . 
F 4 HOH A 102 1002 276 HOH HOH . 
F 4 HOH A 103 1003 277 HOH HOH . 
F 4 HOH A 104 1004 278 HOH HOH . 
F 4 HOH A 105 1005 279 HOH HOH . 
F 4 HOH A 106 1006 280 HOH HOH . 
F 4 HOH A 107 1007 281 HOH HOH . 
F 4 HOH A 108 1008 282 HOH HOH . 
F 4 HOH A 109 1009 283 HOH HOH . 
F 4 HOH A 110 1010 284 HOH HOH . 
F 4 HOH A 111 1011 285 HOH HOH . 
F 4 HOH A 112 1012 286 HOH HOH . 
F 4 HOH A 113 1013 287 HOH HOH . 
F 4 HOH A 114 1014 288 HOH HOH . 
F 4 HOH A 115 1015 289 HOH HOH . 
F 4 HOH A 116 1016 290 HOH HOH . 
F 4 HOH A 117 1017 291 HOH HOH . 
F 4 HOH A 118 1018 292 HOH HOH . 
F 4 HOH A 119 1019 293 HOH HOH . 
F 4 HOH A 120 1020 294 HOH HOH . 
F 4 HOH A 121 1021 295 HOH HOH . 
F 4 HOH A 122 1022 296 HOH HOH . 
F 4 HOH A 123 1023 297 HOH HOH . 
F 4 HOH A 124 1024 298 HOH HOH . 
F 4 HOH A 125 1025 299 HOH HOH . 
F 4 HOH A 126 1026 300 HOH HOH . 
F 4 HOH A 127 1027 301 HOH HOH . 
F 4 HOH A 128 1028 302 HOH HOH . 
F 4 HOH A 129 1029 303 HOH HOH . 
F 4 HOH A 130 1030 304 HOH HOH . 
F 4 HOH A 131 1031 305 HOH HOH . 
F 4 HOH A 132 1032 306 HOH HOH . 
F 4 HOH A 133 1033 307 HOH HOH . 
F 4 HOH A 134 1034 308 HOH HOH . 
F 4 HOH A 135 1035 309 HOH HOH . 
F 4 HOH A 136 1036 310 HOH HOH . 
F 4 HOH A 137 1037 311 HOH HOH . 
F 4 HOH A 138 1038 312 HOH HOH . 
F 4 HOH A 139 1039 313 HOH HOH . 
F 4 HOH A 140 1040 314 HOH HOH . 
F 4 HOH A 141 1041 315 HOH HOH . 
F 4 HOH A 142 1042 316 HOH HOH . 
F 4 HOH A 143 1043 317 HOH HOH . 
F 4 HOH A 144 1044 318 HOH HOH . 
F 4 HOH A 145 1045 319 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BME . . . E 3 33.226 -0.691 13.189 1 47.96 ? C1 BME 900 A 1 
HETATM 2 C C2 BME . . . E 3 32.638 -0.933 14.521 1 42.99 ? C2 BME 900 A 1 
HETATM 3 O O1 BME . . . E 3 32.808 -1.851 12.637 1 51.94 ? O1 BME 900 A 1 
HETATM 4 S S2 BME . . . E 3 34.112 -0.893 15.55 1 73.47 ? S2 BME 900 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           272 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           4 
#