data_1DYR # _model_server_result.job_id n5dOfGlwEQuOagO85tel6Q _model_server_result.datetime_utc '2024-11-28 09:19:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1dyr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":407}' # _entry.id 1DYR # _exptl.entry_id 1DYR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 290.318 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description TRIMETHOPRIM _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 117.7 _cell.angle_gamma 90 _cell.entry_id 1DYR _cell.length_a 69.9 _cell.length_b 43.6 _cell.length_c 37.6 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DYR _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H18 N4 O3' _chem_comp.formula_weight 290.318 _chem_comp.id TOP _chem_comp.mon_nstd_flag . _chem_comp.name TRIMETHOPRIM _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N2 TOP doub 388 n y C1 C8 TOP sing 389 n y C1 H1 TOP sing 390 n n N2 C3 TOP sing 391 n y C3 N4 TOP sing 392 n n C3 N5 TOP doub 393 n y N4 HN41 TOP sing 394 n n N4 HN42 TOP sing 395 n n N5 C6 TOP sing 396 n y C6 N7 TOP sing 397 n n C6 C8 TOP doub 398 n y N7 HN71 TOP sing 399 n n N7 HN72 TOP sing 400 n n C8 C9 TOP sing 401 n n C9 C10 TOP sing 402 n n C9 H91 TOP sing 403 n n C9 H92 TOP sing 404 n n C10 C11 TOP doub 405 n y C10 C21 TOP sing 406 n y C11 C12 TOP sing 407 n y C11 H11 TOP sing 408 n n C12 O13 TOP sing 409 n n C12 C15 TOP doub 410 n y O13 C14 TOP sing 411 n n C14 H141 TOP sing 412 n n C14 H142 TOP sing 413 n n C14 H143 TOP sing 414 n n C15 O16 TOP sing 415 n n C15 C18 TOP sing 416 n y O16 C17 TOP sing 417 n n C17 H171 TOP sing 418 n n C17 H172 TOP sing 419 n n C17 H173 TOP sing 420 n n C18 O19 TOP sing 421 n n C18 C21 TOP doub 422 n y O19 C20 TOP sing 423 n n C20 H201 TOP sing 424 n n C20 H202 TOP sing 425 n n C20 H203 TOP sing 426 n n C21 H21 TOP sing 427 n n # _atom_sites.entry_id 1DYR _atom_sites.fract_transf_matrix[1][1] 0.014306 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007511 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022936 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.030038 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NDP A 1 391 391 NDP NDP . C 3 TOP A 1 407 407 TOP TOP . D 4 HOH A 1 408 408 HOH HOH . D 4 HOH A 2 502 502 HOH HOH . D 4 HOH A 3 503 503 HOH HOH . D 4 HOH A 4 504 504 HOH HOH . D 4 HOH A 5 506 506 HOH HOH . D 4 HOH A 6 508 508 HOH HOH . D 4 HOH A 7 509 509 HOH HOH . D 4 HOH A 8 513 513 HOH HOH . D 4 HOH A 9 514 514 HOH HOH . D 4 HOH A 10 515 515 HOH HOH . D 4 HOH A 11 516 516 HOH HOH . D 4 HOH A 12 517 517 HOH HOH . D 4 HOH A 13 518 518 HOH HOH . D 4 HOH A 14 519 519 HOH HOH . D 4 HOH A 15 520 520 HOH HOH . D 4 HOH A 16 521 521 HOH HOH . D 4 HOH A 17 522 522 HOH HOH . D 4 HOH A 18 523 523 HOH HOH . D 4 HOH A 19 524 524 HOH HOH . D 4 HOH A 20 525 525 HOH HOH . D 4 HOH A 21 526 526 HOH HOH . D 4 HOH A 22 527 527 HOH HOH . D 4 HOH A 23 528 528 HOH HOH . D 4 HOH A 24 529 529 HOH HOH . D 4 HOH A 25 530 530 HOH HOH . D 4 HOH A 26 531 531 HOH HOH . D 4 HOH A 27 532 532 HOH HOH . D 4 HOH A 28 533 533 HOH HOH . D 4 HOH A 29 534 534 HOH HOH . D 4 HOH A 30 535 535 HOH HOH . D 4 HOH A 31 536 536 HOH HOH . D 4 HOH A 32 537 537 HOH HOH . D 4 HOH A 33 538 538 HOH HOH . D 4 HOH A 34 539 539 HOH HOH . D 4 HOH A 35 540 540 HOH HOH . D 4 HOH A 36 542 542 HOH HOH . D 4 HOH A 37 543 543 HOH HOH . D 4 HOH A 38 544 544 HOH HOH . D 4 HOH A 39 545 545 HOH HOH . D 4 HOH A 40 547 547 HOH HOH . D 4 HOH A 41 548 548 HOH HOH . D 4 HOH A 42 549 549 HOH HOH . D 4 HOH A 43 550 550 HOH HOH . D 4 HOH A 44 551 551 HOH HOH . D 4 HOH A 45 552 552 HOH HOH . D 4 HOH A 46 553 553 HOH HOH . D 4 HOH A 47 554 554 HOH HOH . D 4 HOH A 48 555 555 HOH HOH . D 4 HOH A 49 556 556 HOH HOH . D 4 HOH A 50 557 557 HOH HOH . D 4 HOH A 51 558 558 HOH HOH . D 4 HOH A 52 559 559 HOH HOH . D 4 HOH A 53 560 560 HOH HOH . D 4 HOH A 54 561 561 HOH HOH . D 4 HOH A 55 562 562 HOH HOH . D 4 HOH A 56 563 563 HOH HOH . D 4 HOH A 57 564 564 HOH HOH . D 4 HOH A 58 565 565 HOH HOH . D 4 HOH A 59 566 566 HOH HOH . D 4 HOH A 60 567 567 HOH HOH . D 4 HOH A 61 568 568 HOH HOH . D 4 HOH A 62 569 569 HOH HOH . D 4 HOH A 63 570 570 HOH HOH . D 4 HOH A 64 572 572 HOH HOH . D 4 HOH A 65 573 573 HOH HOH . D 4 HOH A 66 574 574 HOH HOH . D 4 HOH A 67 575 575 HOH HOH . D 4 HOH A 68 576 576 HOH HOH . D 4 HOH A 69 577 577 HOH HOH . D 4 HOH A 70 578 578 HOH HOH . D 4 HOH A 71 584 584 HOH HOH . D 4 HOH A 72 585 585 HOH HOH . D 4 HOH A 73 588 588 HOH HOH . D 4 HOH A 74 589 589 HOH HOH . D 4 HOH A 75 591 591 HOH HOH . D 4 HOH A 76 592 592 HOH HOH . D 4 HOH A 77 594 594 HOH HOH . D 4 HOH A 78 596 596 HOH HOH . D 4 HOH A 79 598 598 HOH HOH . D 4 HOH A 80 602 602 HOH HOH . D 4 HOH A 81 603 603 HOH HOH . D 4 HOH A 82 605 605 HOH HOH . D 4 HOH A 83 606 606 HOH HOH . D 4 HOH A 84 609 609 HOH HOH . D 4 HOH A 85 612 612 HOH HOH . D 4 HOH A 86 619 619 HOH HOH . D 4 HOH A 87 620 620 HOH HOH . D 4 HOH A 88 622 622 HOH HOH . D 4 HOH A 89 623 623 HOH HOH . D 4 HOH A 90 624 624 HOH HOH . D 4 HOH A 91 626 626 HOH HOH . D 4 HOH A 92 631 631 HOH HOH . D 4 HOH A 93 632 632 HOH HOH . D 4 HOH A 94 634 634 HOH HOH . D 4 HOH A 95 637 637 HOH HOH . D 4 HOH A 96 640 640 HOH HOH . D 4 HOH A 97 641 641 HOH HOH . D 4 HOH A 98 645 645 HOH HOH . D 4 HOH A 99 654 654 HOH HOH . D 4 HOH A 100 658 658 HOH HOH . D 4 HOH A 101 672 672 HOH HOH . D 4 HOH A 102 673 673 HOH HOH . D 4 HOH A 103 674 674 HOH HOH . D 4 HOH A 104 676 676 HOH HOH . D 4 HOH A 105 678 678 HOH HOH . D 4 HOH A 106 680 680 HOH HOH . D 4 HOH A 107 681 681 HOH HOH . D 4 HOH A 108 682 682 HOH HOH . D 4 HOH A 109 684 684 HOH HOH . D 4 HOH A 110 685 685 HOH HOH . D 4 HOH A 111 686 686 HOH HOH . D 4 HOH A 112 688 688 HOH HOH . D 4 HOH A 113 690 690 HOH HOH . D 4 HOH A 114 691 691 HOH HOH . D 4 HOH A 115 692 692 HOH HOH . D 4 HOH A 116 694 694 HOH HOH . D 4 HOH A 117 699 699 HOH HOH . D 4 HOH A 118 700 700 HOH HOH . D 4 HOH A 119 703 703 HOH HOH . D 4 HOH A 120 704 704 HOH HOH . D 4 HOH A 121 705 705 HOH HOH . D 4 HOH A 122 706 706 HOH HOH . D 4 HOH A 123 707 707 HOH HOH . D 4 HOH A 124 708 708 HOH HOH . D 4 HOH A 125 710 710 HOH HOH . D 4 HOH A 126 713 713 HOH HOH . D 4 HOH A 127 715 715 HOH HOH . D 4 HOH A 128 718 718 HOH HOH . D 4 HOH A 129 719 719 HOH HOH . D 4 HOH A 130 722 722 HOH HOH . D 4 HOH A 131 725 725 HOH HOH . D 4 HOH A 132 726 726 HOH HOH . D 4 HOH A 133 727 727 HOH HOH . D 4 HOH A 134 728 728 HOH HOH . D 4 HOH A 135 729 729 HOH HOH . D 4 HOH A 136 732 732 HOH HOH . D 4 HOH A 137 733 733 HOH HOH . D 4 HOH A 138 736 736 HOH HOH . D 4 HOH A 139 740 740 HOH HOH . D 4 HOH A 140 741 741 HOH HOH . D 4 HOH A 141 742 742 HOH HOH . D 4 HOH A 142 746 746 HOH HOH . D 4 HOH A 143 747 747 HOH HOH . D 4 HOH A 144 748 748 HOH HOH . D 4 HOH A 145 749 749 HOH HOH . D 4 HOH A 146 750 750 HOH HOH . D 4 HOH A 147 751 751 HOH HOH . D 4 HOH A 148 752 752 HOH HOH . D 4 HOH A 149 753 753 HOH HOH . D 4 HOH A 150 754 754 HOH HOH . D 4 HOH A 151 755 755 HOH HOH . D 4 HOH A 152 758 758 HOH HOH . D 4 HOH A 153 759 759 HOH HOH . D 4 HOH A 154 760 760 HOH HOH . D 4 HOH A 155 762 762 HOH HOH . D 4 HOH A 156 763 763 HOH HOH . D 4 HOH A 157 764 764 HOH HOH . D 4 HOH A 158 766 766 HOH HOH . D 4 HOH A 159 767 767 HOH HOH . D 4 HOH A 160 769 769 HOH HOH . D 4 HOH A 161 770 770 HOH HOH . D 4 HOH A 162 771 771 HOH HOH . D 4 HOH A 163 772 772 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 TOP . . . C 3 16.577 4.023 -5.254 1 10.83 ? C1 TOP 407 A 1 HETATM 2 N N2 TOP . . . C 3 15.914 2.958 -4.788 1 9.97 ? N2 TOP 407 A 1 HETATM 3 C C3 TOP . . . C 3 16.103 2.647 -3.538 1 10.22 ? C3 TOP 407 A 1 HETATM 4 N N4 TOP . . . C 3 15.422 1.596 -2.999 1 10.16 ? N4 TOP 407 A 1 HETATM 5 N N5 TOP . . . C 3 16.873 3.282 -2.623 1 10.32 ? N5 TOP 407 A 1 HETATM 6 C C6 TOP . . . C 3 17.514 4.358 -3.09 1 10.9 ? C6 TOP 407 A 1 HETATM 7 N N7 TOP . . . C 3 18.277 5.09 -2.249 1 10.14 ? N7 TOP 407 A 1 HETATM 8 C C8 TOP . . . C 3 17.353 4.769 -4.403 1 11.99 ? C8 TOP 407 A 1 HETATM 9 C C9 TOP . . . C 3 18.101 6.012 -4.909 1 14.31 ? C9 TOP 407 A 1 HETATM 10 C C10 TOP . . . C 3 17.98 6.391 -6.387 1 15.98 ? C10 TOP 407 A 1 HETATM 11 C C11 TOP . . . C 3 19.128 6.284 -7.163 1 16.27 ? C11 TOP 407 A 1 HETATM 12 C C12 TOP . . . C 3 19.11 6.637 -8.517 1 18.7 ? C12 TOP 407 A 1 HETATM 13 O O13 TOP . . . C 3 20.213 6.499 -9.32 1 19.63 ? O13 TOP 407 A 1 HETATM 14 C C14 TOP . . . C 3 21.464 6.362 -8.69 1 19.41 ? C14 TOP 407 A 1 HETATM 15 C C15 TOP . . . C 3 17.905 7.114 -9.067 1 18.94 ? C15 TOP 407 A 1 HETATM 16 O O16 TOP . . . C 3 17.827 7.494 -10.423 1 20.08 ? O16 TOP 407 A 1 HETATM 17 C C17 TOP . . . C 3 16.651 6.953 -10.933 1 20.05 ? C17 TOP 407 A 1 HETATM 18 C C18 TOP . . . C 3 16.76 7.254 -8.29 1 17.37 ? C18 TOP 407 A 1 HETATM 19 O O19 TOP . . . C 3 15.63 7.745 -8.949 1 15.88 ? O19 TOP 407 A 1 HETATM 20 C C20 TOP . . . C 3 14.648 8.167 -7.997 1 13.17 ? C20 TOP 407 A 1 HETATM 21 C C21 TOP . . . C 3 16.772 6.898 -6.932 1 16.66 ? C21 TOP 407 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 21 #