data_1DZH
#
_model_server_result.job_id            '_RCg08540Elh9iGrIlSlIQ' 
_model_server_result.datetime_utc      '2024-11-22 08:41:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1dzh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":805}' 
#
_entry.id    1DZH 
#
_exptl.entry_id    1DZH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          105.63 
_cell.angle_gamma         90 
_cell.entry_id            1DZH 
_cell.length_a            69.175 
_cell.length_b            99.865 
_cell.length_c            89.421 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1DZH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PQS monomeric 1 author_and_software_defined_assembly 1 
PQS monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
B,D,E,I,J,L 1 1 
A,C,F,G,H,K 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 H N N 
? 6 J N N 
#
loop_
_pdbx_entity_branch.entity_id
_pdbx_entity_branch.type
3 oligosaccharide 
4 oligosaccharide 
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.details
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.atom_stereo_config_1
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.atom_stereo_config_2
_pdbx_entity_branch_link.value_order
1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
2 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
3 ? 4 3 2 BMA NAG C1 O1 . O4 HO4 . sing 
4 ? 4 4 3 BMA BMA C1 O1 . O3 HO3 . sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
3 n C NAG 1 A 1 NAG I 841 NAG 
3 n C NAG 2 A 2 NAG I 842 NAG 
3 n D NAG 1 B 1 NAG L 841 NAG 
3 n D NAG 2 B 2 NAG L 842 NAG 
4 n E NAG 1 C 1 NAG L 861 NAG 
4 n E NAG 2 C 2 NAG L 862 NAG 
4 n E BMA 3 C 3 BMA L 863 BMA 
4 n E BMA 4 C 4 BMA L 864 BMA 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 8 I CYS 8 1_555 A SG CYS 128 I CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf2 A SG CYS 21 I CYS 21 1_555 A SG CYS 95 I CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf3 A SG CYS 247 I CYS 247 1_555 A SG CYS 430 I CYS 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf4 B SG CYS 8 L CYS 8 1_555 B SG CYS 128 L CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
disulf ? disulf5 B SG CYS 21 L CYS 21 1_555 B SG CYS 95 L CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
disulf ? disulf6 B SG CYS 247 L CYS 247 1_555 B SG CYS 430 L CYS 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
covale ? covale1 A ND2 ASN 96 I ASN 96 1_555 F C1 NAG . I NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.38 ? 
covale ? covale2 A ND2 ASN 155 I ASN 155 1_555 C C1 NAG . A NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.372 ? 
covale ? covale3 A ND2 ASN 192 I ASN 192 1_555 G C1 NAG . I NAG 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.409 ? 
covale ? covale4 A C GLY 379 I GLY 379 1_555 A N CYF 380 I CYF 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale5 A C CYF 380 I CYF 380 1_555 A N GLU 381 I GLU 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? 
covale ? covale6 B ND2 ASN 96 L ASN 96 1_555 I C1 NAG . L NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.388 ? 
covale ? covale7 B ND2 ASN 155 L ASN 155 1_555 D C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? 
covale ? covale8 B ND2 ASN 192 L ASN 192 1_555 E C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.384 ? 
covale ? covale9 C O4 NAG . A NAG 1 1_555 C C1 NAG . A NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.4 ? 
covale ? covale10 D O4 NAG . B NAG 1 1_555 D C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.353 ? 
covale ? covale11 E O4 NAG . C NAG 1 1_555 E C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.388 ? 
covale ? covale12 E O4 NAG . C NAG 2 1_555 E C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.411 ? 
covale ? covale13 E O3 BMA . C BMA 3 1_555 E C1 BMA . C BMA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.404 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 215 n n 
C1 C2 GOL sing 216 n n 
C1 H11 GOL sing 217 n n 
C1 H12 GOL sing 218 n n 
O1 HO1 GOL sing 219 n n 
C2 O2 GOL sing 220 n n 
C2 C3 GOL sing 221 n n 
C2 H2 GOL sing 222 n n 
O2 HO2 GOL sing 223 n n 
C3 O3 GOL sing 224 n n 
C3 H31 GOL sing 225 n n 
C3 H32 GOL sing 226 n n 
O3 HO3 GOL sing 227 n n 
#
_atom_sites.entry_id                     1DZH 
_atom_sites.fract_transf_matrix[1][1]    0.014456 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004044 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010013 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011612 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 5 NAG I 1 801 801 NAG NAG . 
G 5 NAG I 1 804 861 NAG NAG . 
H 6 GOL I 1 805 901 GOL GOL . 
I 5 NAG L 1 801 801 NAG NAG . 
J 6 GOL L 1 808 901 GOL GOL . 
K 7 HOH I 1 901 2008 HOH HOH . 
K 7 HOH I 2 902 2001 HOH HOH . 
K 7 HOH I 3 903 2006 HOH HOH . 
K 7 HOH I 4 904 2011 HOH HOH . 
K 7 HOH I 5 905 2005 HOH HOH . 
K 7 HOH I 6 906 2018 HOH HOH . 
K 7 HOH I 7 907 2028 HOH HOH . 
K 7 HOH I 8 908 2026 HOH HOH . 
K 7 HOH I 9 909 2013 HOH HOH . 
K 7 HOH I 10 910 2020 HOH HOH . 
K 7 HOH I 11 911 2015 HOH HOH . 
K 7 HOH I 12 912 2012 HOH HOH . 
K 7 HOH I 13 913 2021 HOH HOH . 
K 7 HOH I 14 914 2023 HOH HOH . 
K 7 HOH I 15 915 2007 HOH HOH . 
K 7 HOH I 16 916 2025 HOH HOH . 
K 7 HOH I 17 917 2019 HOH HOH . 
K 7 HOH I 18 918 2010 HOH HOH . 
K 7 HOH I 19 919 2002 HOH HOH . 
K 7 HOH I 20 920 2016 HOH HOH . 
K 7 HOH I 21 921 2027 HOH HOH . 
K 7 HOH I 22 922 2003 HOH HOH . 
K 7 HOH I 23 923 2009 HOH HOH . 
K 7 HOH I 24 924 2014 HOH HOH . 
K 7 HOH I 25 925 2022 HOH HOH . 
K 7 HOH I 26 926 2024 HOH HOH . 
K 7 HOH I 27 927 2017 HOH HOH . 
K 7 HOH I 28 928 2004 HOH HOH . 
L 7 HOH L 1 901 2007 HOH HOH . 
L 7 HOH L 2 902 2001 HOH HOH . 
L 7 HOH L 3 903 2009 HOH HOH . 
L 7 HOH L 4 904 2005 HOH HOH . 
L 7 HOH L 5 905 2008 HOH HOH . 
L 7 HOH L 6 906 2003 HOH HOH . 
L 7 HOH L 7 907 2002 HOH HOH . 
L 7 HOH L 8 908 2006 HOH HOH . 
L 7 HOH L 9 909 2004 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . H 6 32.349 -9.385 -2.814 1 53.77 ? C1 GOL 805 I 1 
HETATM 2 O O1 GOL . . . H 6 31.217 -9.938 -2.084 1 56.8 ? O1 GOL 805 I 1 
HETATM 3 C C2 GOL . . . H 6 33.684 -9.831 -2.152 1 52.72 ? C2 GOL 805 I 1 
HETATM 4 O O2 GOL . . . H 6 34.836 -9.201 -2.708 1 50.09 ? O2 GOL 805 I 1 
HETATM 5 C C3 GOL . . . H 6 33.918 -11.353 -2.246 1 51.24 ? C3 GOL 805 I 1 
HETATM 6 O O3 GOL . . . H 6 33.883 -11.769 -3.602 1 58.29 ? O3 GOL 805 I 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#